Include Healing Defective Traces section

guaix-ucm · Oct 16, 2024 · cc57c13 · cc57c13
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Showing 15 changed files with 580 additions and 5 deletions.
diff --git a/cookbook/_static/healing/final_traces_in_full_image_zoom.png b/cookbook/_static/healing/final_traces_in_full_image_zoom.png
diff --git a/cookbook/_static/healing/fixing_601_vertical_shift_in_pixels.png b/cookbook/_static/healing/fixing_601_vertical_shift_in_pixels.png
diff --git a/cookbook/_static/healing/fixing_603_duplicate_trace.png b/cookbook/_static/healing/fixing_603_duplicate_trace.png
diff --git a/cookbook/_static/healing/fixing_603_extrapolation_through_user_points.png b/cookbook/_static/healing/fixing_603_extrapolation_through_user_points.png
diff --git a/cookbook/_static/healing/fixing_603_fit_through_user_points.png b/cookbook/_static/healing/fixing_603_fit_through_user_points.png
diff --git a/cookbook/_static/healing/fixing_610_extrapolation.png b/cookbook/_static/healing/fixing_610_extrapolation.png
diff --git a/cookbook/_static/healing/fixing_610_sandwich.png b/cookbook/_static/healing/fixing_610_sandwich.png
diff --git a/cookbook/_static/healing/fixing_620_renumber_fibids_within_box.png b/cookbook/_static/healing/fixing_620_renumber_fibids_within_box.png
diff --git a/cookbook/_static/healing/healing.yaml b/cookbook/_static/healing/healing.yaml
@@ -0,0 +1,72 @@
+description: extrapolation_through_user_points
+fibid: 603
+xstart_reuse: 4
+xstop_reuse: 2000
+resampling: 20
+poldeg: 5
+xstart: 6
+xstop: 4090
+user_points: 
+  - [3500, 3817.0]
+  - [4000, 3818.0]
+refit: False
+---
+description: extrapolation_through_user_points
+fibid: 604
+xstart_reuse: 4
+xstop_reuse: 2000
+resampling: 20
+poldeg: 5
+xstart: 6
+xstop: 4090
+user_points: 
+  - [3500, 3823.2]
+  - [4000, 3824.2]
+refit: False
+---
+description: extrapolation_through_user_points
+fibid: 606
+xstart_reuse: 4
+xstop_reuse: 2000
+resampling: 20
+poldeg: 5
+xstart: 6
+xstop: 4090
+user_points: 
+  - [3500, 3835.0]
+  - [4000, 3836.2]
+refit: False
+---
+description: sandwich
+fibid: 607
+fraction: 0.5
+neighbours: [606, 608]
+xstart: 6
+xstop: 4090
+---
+description: sandwich
+fibid: 610
+fraction: 0.5
+neighbours: [609, 611]
+xstart: 6
+xstop: 4090
+---
+description: extrapolation_through_user_points
+fibid: 613
+xstart_reuse: 4
+xstop_reuse: 2000
+resampling: 20
+poldeg: 5
+xstart: 6
+xstop: 4090
+user_points: 
+  - [3500, 3878.1]
+  - [4000, 3878.6]
+refit: False
+---
+description: sandwich
+fibid: 614
+fraction: 0.5
+neighbours: [613, 615]
+xstart: 6
+xstop: 4090
diff --git a/cookbook/_static/healing/healing_all_traces_zoom.png b/cookbook/_static/healing/healing_all_traces_zoom.png
diff --git a/cookbook/_static/healing/initial_traces_in_full_image.png b/cookbook/_static/healing/initial_traces_in_full_image.png
diff --git a/cookbook/_static/healing/initial_traces_in_full_image_zoom.png b/cookbook/_static/healing/initial_traces_in_full_image_zoom.png