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FULL_ME_DMR_BIO.xml
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FULL_ME_DMR_BIO.xml
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<!-- BEGIN full_me_dmr_biological -->
<dataset type="EDDTableFromAsciiFiles" datasetID="full_me_dmr_biological" active="true">
<reloadEveryNMinutes>10080</reloadEveryNMinutes>
<updateEveryNMillis>10000</updateEveryNMillis>
<fileDir>/home2/data/GMRI/ME_DMR_SEAGRANT/</fileDir>
<fileNameRegex>OUT_FULL_TOW_Biological.*\.csv</fileNameRegex>
<recursive>true</recursive>
<pathRegex>.*</pathRegex>
<metadataFrom>last</metadataFrom>
<charset>ISO-8859-1</charset>
<columnSeparator>,</columnSeparator>
<columnNamesRow>1</columnNamesRow>
<firstDataRow>2</firstDataRow>
<preExtractRegex></preExtractRegex>
<postExtractRegex></postExtractRegex>
<extractRegex></extractRegex>
<columnNameForExtract></columnNameForExtract>
<sortedColumnSourceName></sortedColumnSourceName>
<sortFilesBySourceNames></sortFilesBySourceNames>
<fileTableInMemory>false</fileTableInMemory>
<accessibleViaFiles>false</accessibleViaFiles>
<!-- sourceAttributes>
</sourceAttributes -->
<addAttributes>
<att name="defaultDataQuery">&time>=""</att>
<att name="defaultGraphQuery">longitude,latitude,SAMPLE_WEIGHT&YEAR=2017&COMMON_NAME=%22haddock%22&.draw=markers&.marker=5|5&.color=0x000000&.colorBar=|||||amp&;.bgColor=0xffffffff</att>
<att name="cdm_data_type">Other</att>
<att name="Conventions">COARDS, CF-1.6, ACDD-1.3</att>
<att name="infoUrl">https://www.maine.gov/dmr/science-research/projects/trawlsurvey/index.html</att>
<att name="institution">State of Maine Department of Marine Resources</att>
<att name="creator_name" >Rebecca Peters</att>
<att name="creator_email" >[email protected]</att>
<att name="creator_country" >USA</att>
<att name="creator_institution" >Maine - New Hampshire Inshore Trawl Survey</att>
<att name="creator_type" >institution</att>
<att name="creator_sector" >gov_state</att>
<att name="creator_url" >https://www.maine.gov/dmr/science-research/projects/trawlsurvey/index.html</att>
<att name="creator_phone" >207-633-9530</att>
<att name="creator_city" >West Boothbay Harbor</att>
<att name="creator_state" >ME,NH</att>
<att name="keywords">age, atmosphere, atmospheric, common, COMMON_NAME, condition, data, date, density, depth, direction, dmr, DMR_EFFORT_IDENTIFIER, DMR_SAMPLE_IDENTIFIER, DMR_TRAWL_FISHID, DMR_TRIP_IDENTIFIER, earth, Earth Science > Atmosphere > Atmospheric Winds > Surface Winds, Earth Science > Oceans > Ocean Waves > Significant Wave Height, Earth Science > Oceans > Salinity/Density > Salinity, effort, EFFORT_END_DATE, EFFORT_END_TIME, EFFORT_SEQ_NO, EFFORT_START_DATE, EFFORT_START_TIME, end, END_DEPTH, fishid, frequency, fullness, gear, GEAR_CONDITION, grid, GRID_ID, gut, GUT_FULLNESS, height, identifier, iso, ISO_END_TIME, ISO_START_TIME, latitude, length, LENGTH_TOW_TIME, local, longitude, maturity, MATURITY_TYPE, name, ocean, oceans, practical, quality, region, salinity, sample, SAMPLE_LENGTH, SAMPLE_TYPE, SAMPLE_WEIGHT, science, sea, sea_surface_wave_significant_height, sea_water_practical_salinity, season, seawater, seq, sex, significant, source, start, START_DEPTH, START_LATITUDE, START_LONGITUDE, station, STATION_TYPE, stratum, surface, SURFACE_SALINITY, SURFACE_TEMP_C, temperature, time, tow, TOW_LENGTH_NM, TOW_QUALITY, trawl, trip, type, water, WATER_TEMP_C, wave, WAVE_HEIGHT, waves, weight, wind, WIND_DIRECTION, wind_from_direction, winds, year</att>
<att name="keywords_vocabulary">GCMD Science Keywords</att>
<att name="license">[standard]</att>
<att name="sourceUrl">(local files)</att>
<att name="standard_name_vocabulary">CF Standard Name Table v29</att>
<att name="subsetVariables">DMR_TRIP_IDENTIFIER,DMR_EFFORT_IDENTIFIER,SEASON,YEAR,COMMON_NAME,SEX, MATURITY_TYPE</att>
<att name="summary">DMR Trawl Survey for GMRI. This file includes all data on maturity that were taken during the surveys. The species examined for age and maturity are decided before the survey. In this file you will find DMR_TRIP_IDENTIFIER (indicates the survey), DMR_EFFORT_ID (this is the tow number during that survey), REGION (1-5), STRATUM (1-4). The COMMON_NAME is the species, SAMPLE_LENGTH is the length of the species in cm and FREQUENCY is the number of times that length was examined (this shouldn't be over 1, but I did find a frequency of 7 for an alewive, that is a mistake since we don't examine alewives for age or maturity. It must have been entered in as a bio sample accidentally). The DMR_TRAWL_FISHID is our unique code for a species. DMR_SAMPLE_ID is a unique code for each sample. I wouldn't use the AGE column since I haven't gone and checked if those are ages entered after someone has aged the fish. SAMPLE_WEIGHT is the weight of the species in grams. GUT_FULLNESS is from when they have done stomach content in the past. If you do want to use that let me know and I'll dig up some more information on it.</att>
<att name="title">Full Tow Info DMR Trawl Survey Biological Data</att>
</addAttributes>
<dataVariable>
<sourceName>DMR_TRIP_IDENTIFIER</sourceName>
<destinationName>DMR_TRIP_IDENTIFIER</destinationName>
<dataType>String</dataType>
<!-- sourceAttributes>
</sourceAttributes -->
<addAttributes>
<att name="long_name">DMR TRIP IDENTIFIER</att>
<att name="description">survey season and year ex. FL00 is the Fall 2000 survey</att>
</addAttributes>
</dataVariable>
<dataVariable>
<sourceName>DMR_EFFORT_IDENTIFIER</sourceName>
<destinationName>DMR_EFFORT_IDENTIFIER</destinationName>
<dataType>byte</dataType>
<!-- sourceAttributes>
</sourceAttributes -->
<addAttributes>
<att name="long_name">DMR EFFORT IDENTIFIER</att>
<att name="description">Tow number for this survey survey</att>
</addAttributes>
</dataVariable>
<dataVariable>
<sourceName>REGION</sourceName>
<destinationName>REGION</destinationName>
<dataType>byte</dataType>
<!-- sourceAttributes>
</sourceAttributes -->
<addAttributes>
<att name="long_name">REGION</att>
<att name="description">the region the tow was completed in ( 1 through 5)</att>
</addAttributes>
</dataVariable>
<dataVariable>
<sourceName>STRATUM</sourceName>
<destinationName>STRATUM</destinationName>
<dataType>byte</dataType>
<!-- sourceAttributes>
</sourceAttributes -->
<addAttributes>
<att name="long_name">STRATUM</att>
<att name="description">Stratum the tow was completed in (1 to 4). strata 1: 5 to 40 m, strata 2: 40 to 70m, strata 3: 70 to 100m, strata 4: > 100m).</att>
</addAttributes>
</dataVariable>
<dataVariable>
<sourceName>COMMON_NAME</sourceName>
<destinationName>COMMON_NAME</destinationName>
<dataType>String</dataType>
<!-- sourceAttributes>
</sourceAttributes -->
<addAttributes>
<att name="long_name">COMMON NAME</att>
</addAttributes>
</dataVariable>
<dataVariable>
<sourceName>SAMPLE_LENGTH</sourceName>
<destinationName>SAMPLE_LENGTH</destinationName>
<dataType>byte</dataType>
<!-- sourceAttributes>
</sourceAttributes -->
<addAttributes>
<att name="long_name">SAMPLE LENGTH</att>
<att name="description">Length of the species in cm</att>
<att name="units">cm</att>
</addAttributes>
</dataVariable>
<dataVariable>
<sourceName>FREQUENCY</sourceName>
<destinationName>FREQUENCY</destinationName>
<dataType>byte</dataType>
<!-- sourceAttributes>
</sourceAttributes -->
<addAttributes>
<att name="long_name">FREQUENCY</att>
<att name="description">This is the number of times that length was examined and shouldn't be over 1</att>
</addAttributes>
</dataVariable>
<dataVariable>
<sourceName>SAMPLE_TYPE</sourceName>
<destinationName>SAMPLE_TYPE</destinationName>
<dataType>String</dataType>
<!-- sourceAttributes>
</sourceAttributes -->
<addAttributes>
<att name="long_name">SAMPLE TYPE</att>
</addAttributes>
</dataVariable>
<dataVariable>
<sourceName>SEX</sourceName>
<destinationName>SEX</destinationName>
<dataType>String</dataType>
<!-- sourceAttributes>
</sourceAttributes -->
<addAttributes>
<att name="long_name">SEX</att>
</addAttributes>
</dataVariable>
<dataVariable>
<sourceName>MATURITY_TYPE</sourceName>
<destinationName>MATURITY_TYPE</destinationName>
<dataType>String</dataType>
<!-- sourceAttributes>
</sourceAttributes -->
<addAttributes>
<att name="long_name">MATURITY TYPE</att>
</addAttributes>
</dataVariable>
<dataVariable>
<sourceName>DMR_TRAWL_FISHID</sourceName>
<destinationName>DMR_TRAWL_FISHID</destinationName>
<dataType>String</dataType>
<!-- sourceAttributes>
</sourceAttributes -->
<addAttributes>
<att name="long_name">DMR TRAWL FISHID</att>
<att name="description">DMR database unique numbers for each species</att>
</addAttributes>
</dataVariable>
<dataVariable>
<sourceName>DMR_SAMPLE_IDENTIFIER</sourceName>
<destinationName>DMR_SAMPLE_IDENTIFIER</destinationName>
<dataType>int</dataType>
<!-- sourceAttributes>
</sourceAttributes -->
<addAttributes>
<att name="long_name">DMR SAMPLE IDENTIFIER</att>
<att name="description">Unique code for each sample.</att>
</addAttributes>
</dataVariable>
<dataVariable>
<sourceName>AGE</sourceName>
<destinationName>AGE</destinationName>
<dataType>byte</dataType>
<!-- sourceAttributes>
</sourceAttributes -->
<addAttributes>
<att name="long_name">AGE</att>
</addAttributes>
</dataVariable>
<dataVariable>
<sourceName>SAMPLE_WEIGHT</sourceName>
<destinationName>SAMPLE_WEIGHT</destinationName>
<dataType>int</dataType>
<!-- sourceAttributes>
</sourceAttributes -->
<addAttributes>
<att name="long_name">SAMPLE WEIGHT</att>
<att name="missing_value" type="int">99999</att>
<att name="description">The weight of the species in grams.</att>
<att name="units">g</att>
</addAttributes>
</dataVariable>
<dataVariable>
<sourceName>GUT_FULLNESS</sourceName>
<destinationName>GUT_FULLNESS</destinationName>
<dataType>String</dataType>
<!-- sourceAttributes>
</sourceAttributes -->
<addAttributes>
<att name="long_name">GUT FULLNESS</att>
<att name="description">This from when they have done stomach content in the past.</att>
</addAttributes>
</dataVariable>
<dataVariable>
<sourceName>EFFORT_END_DATE</sourceName>
<destinationName>EFFORT_END_DATE</destinationName>
<dataType>String</dataType>
<!-- sourceAttributes>
</sourceAttributes -->
<addAttributes>
<att name="long_name">EFFORT END DATE</att>
</addAttributes>
</dataVariable>
<dataVariable>
<sourceName>EFFORT_END_TIME</sourceName>
<destinationName>EFFORT_END_TIME</destinationName>
<dataType>String</dataType>
<!-- sourceAttributes>
</sourceAttributes -->
<addAttributes>
<att name="long_name">EFFORT END TIME</att>
</addAttributes>
</dataVariable>
<dataVariable>
<sourceName>EFFORT_SEQ_NO</sourceName>
<destinationName>EFFORT_SEQ_NO</destinationName>
<dataType>int</dataType>
<!-- sourceAttributes>
</sourceAttributes -->
<addAttributes>
<att name="long_name">EFFORT SEQ NO</att>
<att name="description">this is a unique number that the DMR database generates to connect each sample (catch) entry to this tow information.</att>
</addAttributes>
</dataVariable>
<dataVariable>
<sourceName>EFFORT_START_DATE</sourceName>
<destinationName>EFFORT_START_DATE</destinationName>
<dataType>String</dataType>
<!-- sourceAttributes>
</sourceAttributes -->
<addAttributes>
<att name="long_name">EFFORT START DATE</att>
</addAttributes>
</dataVariable>
<dataVariable>
<sourceName>EFFORT_START_TIME</sourceName>
<destinationName>EFFORT_START_TIME</destinationName>
<dataType>String</dataType>
<!-- sourceAttributes>
</sourceAttributes -->
<addAttributes>
<att name="long_name">EFFORT START TIME</att>
</addAttributes>
</dataVariable>
<dataVariable>
<sourceName>END_DEPTH</sourceName>
<destinationName>END_DEPTH</destinationName>
<dataType>float</dataType>
<!-- sourceAttributes>
</sourceAttributes -->
<addAttributes>
<att name="long_name">END DEPTH</att>
<att name="description=">end depth of the survey in fathoms.</att>
<att name="units">fathom</att>
</addAttributes>
</dataVariable>
<dataVariable>
<sourceName>END_LATITUDE</sourceName>
<destinationName>END_LATITUDE</destinationName>
<dataType>double</dataType>
<!-- sourceAttributes>
</sourceAttributes -->
<addAttributes>
<att name="colorBarMaximum" type="double">90.0</att>
<att name="colorBarMinimum" type="double">-90.0</att>
<att name="long_name">Latitude</att>
<att name="source_name">END_LATITUDE</att>
<att name="standard_name">latitude</att>
<att name="units">degrees_north</att>
</addAttributes>
</dataVariable>
<dataVariable>
<sourceName>END_LONGITUDE</sourceName>
<destinationName>END_LONGITUDE</destinationName>
<dataType>double</dataType>
<!-- sourceAttributes>
</sourceAttributes -->
<addAttributes>
<att name="colorBarMaximum" type="double">180.0</att>
<att name="colorBarMinimum" type="double">-180.0</att>
<att name="long_name">Longitude</att>
<att name="source_name">END_LONGITUDE</att>
<att name="standard_name">longitude</att>
<att name="units">degrees_east</att>
</addAttributes>
</dataVariable>
<dataVariable>
<sourceName>GEAR_CONDITION</sourceName>
<destinationName>GEAR_CONDITION</destinationName>
<dataType>String</dataType>
<!-- sourceAttributes>
</sourceAttributes -->
<addAttributes>
<att name="long_name">GEAR CONDITION</att>
</addAttributes>
</dataVariable>
<dataVariable>
<sourceName>GRID_ID</sourceName>
<destinationName>GRID_ID</destinationName>
<dataType>short</dataType>
<!-- sourceAttributes>
</sourceAttributes -->
<addAttributes>
<att name="long_name">GRID ID</att>
</addAttributes>
</dataVariable>
<dataVariable>
<sourceName>LENGTH_TOW_TIME</sourceName>
<destinationName>LENGTH_TOW_TIME</destinationName>
<dataType>String</dataType>
<!-- sourceAttributes>
</sourceAttributes -->
<addAttributes>
<att name="long_name">LENGTH TOW TIME</att>
</addAttributes>
</dataVariable>
<dataVariable>
<sourceName>SALINITY</sourceName>
<destinationName>SALINITY</destinationName>
<dataType>float</dataType>
<!-- sourceAttributes>
</sourceAttributes -->
<addAttributes>
<att name="colorBarMaximum" type="double">37.0</att>
<att name="colorBarMinimum" type="double">32.0</att>
<att name="long_name">Sea Water Practical Salinity</att>
<att name="standard_name">sea_water_practical_salinity</att>
<att name="units">PSU</att>
</addAttributes>
</dataVariable>
<dataVariable>
<sourceName>START_DEPTH</sourceName>
<destinationName>START_DEPTH</destinationName>
<dataType>float</dataType>
<!-- sourceAttributes>
</sourceAttributes -->
<addAttributes>
<att name="long_name">START DEPTH</att>
<att name="description">start depth of the survey in fathoms.</att>
<att name="units">fathom</att>
</addAttributes>
</dataVariable>
<dataVariable>
<sourceName>START_LATITUDE</sourceName>
<destinationName>latitude</destinationName>
<dataType>double</dataType>
<!-- sourceAttributes>
</sourceAttributes -->
<addAttributes>
<att name="colorBarMaximum" type="double">90.0</att>
<att name="colorBarMinimum" type="double">-90.0</att>
<att name="long_name">Latitude</att>
<att name="standard_name">latitude</att>
<att name="units">degrees_north</att>
<att name="description">The start position of the tow.</att>
</addAttributes>
</dataVariable>
<dataVariable>
<sourceName>START_LONGITUDE</sourceName>
<destinationName>longitude</destinationName>
<dataType>double</dataType>
<!-- sourceAttributes>
</sourceAttributes -->
<addAttributes>
<att name="colorBarMaximum" type="double">180.0</att>
<att name="colorBarMinimum" type="double">-180.0</att>
<att name="long_name">Longitude</att>
<att name="standard_name">longitude</att>
<att name="units">degrees_east</att>
<att name="description">The start position of the tow.</att>
</addAttributes>
</dataVariable>
<dataVariable>
<sourceName>STATION_TYPE</sourceName>
<destinationName>STATION_TYPE</destinationName>
<dataType>String</dataType>
<!-- sourceAttributes>
</sourceAttributes -->
<addAttributes>
<att name="long_name">STATION TYPE</att>
<att name="description">The code used for each station. We randomly select all of the stations (tow locations) before each survey. However, due to gear and bottom some locations are not able to be completed. Due to this the captain will move to a nearby site to complete the tow. To make note of this while out on the survey we use a station_type code. R is for random, which means this was the tow randomly selected before the survey. RA is random alternative, which means this tow was a make up for a random tow that couldn't be done. A RA is a tow the captain randomly found where no gear or bad bottom was present and hasn't been towed before. NA is a non-random alternate tow to make up for a randomly selected tow that couldn't be completed. A NA is a tow that has previously been towed before which is why it is non-random. Later on they changed the coding of non-random from NA to NR. F is a fixed site. When the survey first started, they had a series of fixed sites they would survey at each year. These fixed sites were dropped in Fall 2005. D is for duplicate. This is when they have completed a tow twice so they duplicated the tow at that site.</att>
</addAttributes>
</dataVariable>
<dataVariable>
<sourceName>SURFACE_SALINITY</sourceName>
<destinationName>SURFACE_SALINITY</destinationName>
<dataType>float</dataType>
<!-- sourceAttributes>
</sourceAttributes -->
<addAttributes>
<att name="colorBarMaximum" type="double">37.0</att>
<att name="colorBarMinimum" type="double">32.0</att>
<att name="long_name">Sea Water Practical Salinity</att>
<att name="standard_name">sea_water_practical_salinity</att>
<att name="units">psu</att>
<att name="description">surface salinity of the tow</att>
</addAttributes>
</dataVariable>
<dataVariable>
<sourceName>SURFACE_TEMP_C</sourceName>
<destinationName>SURFACE_TEMP_C</destinationName>
<dataType>float</dataType>
<!-- sourceAttributes>
</sourceAttributes -->
<addAttributes>
<att name="long_name">SURFACE TEMP C</att>
<att name="description">surface water temperature of the tow</att>
<att name="units">celsius</att>
</addAttributes>
</dataVariable>
<dataVariable>
<sourceName>TOW_LENGTH_NM</sourceName>
<destinationName>TOW_LENGTH_NM</destinationName>
<dataType>float</dataType>
<!-- sourceAttributes>
</sourceAttributes -->
<addAttributes>
<att name="long_name">TOW LENGTH NM</att>
<att name="description">the length of the tow in nautical miles.</att>
<att name="units">nautical_mile</att>
</addAttributes>
</dataVariable>
<dataVariable>
<sourceName>TOW_QUALITY</sourceName>
<destinationName>TOW_QUALITY</destinationName>
<dataType>byte</dataType>
<!-- sourceAttributes>
</sourceAttributes -->
<addAttributes>
<att name="colorBarMaximum" type="double">150.0</att>
<att name="colorBarMinimum" type="double">0.0</att>
<att name="long_name">TOW QUALITY</att>
</addAttributes>
</dataVariable>
<dataVariable>
<sourceName>WATER_TEMP_C</sourceName>
<destinationName>WATER_TEMP_C</destinationName>
<dataType>float</dataType>
<!-- sourceAttributes>
</sourceAttributes -->
<addAttributes>
<att name="long_name">WATER TEMP C</att>
<att name="description">bottom water temp in degrees Celsius</att>
<att name="units">celsius</att>
</addAttributes>
</dataVariable>
<dataVariable>
<sourceName>WAVE_HEIGHT</sourceName>
<destinationName>WAVE_HEIGHT</destinationName>
<dataType>String</dataType>
<!-- sourceAttributes>
</sourceAttributes -->
<addAttributes>
<att name="colorBarMaximum" type="double">10.0</att>
<att name="colorBarMinimum" type="double">0.0</att>
<att name="long_name">Sea Surface Wave Significant Height</att>
<att name="standard_name">sea_surface_wave_significant_height</att>
<att name="description">estimated wave height during that tow</att>
</addAttributes>
</dataVariable>
<dataVariable>
<sourceName>WIND</sourceName>
<destinationName>WIND</destinationName>
<dataType>float</dataType>
<!-- sourceAttributes>
</sourceAttributes -->
<addAttributes>
<att name="long_name">WIND</att>
<att name="description">estimated wind speed</att>
</addAttributes>
</dataVariable>
<dataVariable>
<sourceName>WIND_DIRECTION</sourceName>
<destinationName>WIND_DIRECTION</destinationName>
<dataType>String</dataType>
<!-- sourceAttributes>
</sourceAttributes -->
<addAttributes>
<att name="colorBarMaximum" type="double">360.0</att>
<att name="colorBarMinimum" type="double">0.0</att>
<att name="long_name">Wind From Direction</att>
<att name="standard_name">wind_from_direction</att>
<att name="description">estimated wind direction</att>
</addAttributes>
</dataVariable>
<dataVariable>
<sourceName>ISO_START_TIME</sourceName>
<destinationName>time</destinationName>
<dataType>String</dataType>
<!-- sourceAttributes>
</sourceAttributes -->
<addAttributes>
<att name="long_name">ISO START TIME</att>
<att name="standard_name">time</att>
<att name="units">yyyy-MM-dd'T'HH:mm</att>
<att name="description">Start time of the tow</att>
</addAttributes>
</dataVariable>
<dataVariable>
<sourceName>ISO_END_TIME</sourceName>
<destinationName>ISO_END_TIME</destinationName>
<dataType>String</dataType>
<!-- sourceAttributes>
</sourceAttributes -->
<addAttributes>
<att name="long_name">ISO END TIME</att>
<att name="standard_name">time</att>
<att name="units">yyyy-MM-dd'T'HH:mm</att>
<att name="description">End time of the tow</att>
</addAttributes>
</dataVariable>
<dataVariable>
<sourceName>YEAR</sourceName>
<destinationName>YEAR</destinationName>
<dataType>short</dataType>
<!-- sourceAttributes>
</sourceAttributes -->
<addAttributes>
<att name="long_name">YEAR</att>
</addAttributes>
</dataVariable>
<dataVariable>
<sourceName>SEASON</sourceName>
<destinationName>SEASON</destinationName>
<dataType>String</dataType>
<!-- sourceAttributes>
</sourceAttributes -->
<addAttributes>
<att name="long_name">SEASON</att>
</addAttributes>
</dataVariable>
</dataset>
<!-- END full_me_dmr_biological -->