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01.download.sh
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mkdir RNA
cd RNA
wget -c http://egg2.wustl.edu/roadmap/data/byDataType/rna/expression/EG.name.txt
wget -c http://egg2.wustl.edu/roadmap/data/byDataType/rna/expression/Ensembl_v65.Gencode_v10.ENSG.gene_info
wget -c http://egg2.wustl.edu/roadmap/data/byDataType/rna/expression/57epigenomes.RPKM.nc.gz
wget -c http://egg2.wustl.edu/roadmap/data/byDataType/rna/expression/57epigenomes.RPKM.pc.gz
zcat 57epigenomes.RPKM.nc.gz > 57epigenomes.RPKM.nc.tsv
zcat 57epigenomes.RPKM.pc.gz > 57epigenomes.RPKM.pc.tsv
rm *.gz
cd ..
mkdir Liver
cd Liver
wget -c http://egg2.wustl.edu/roadmap/data/byFileType/signal/consolidated/macs2signal/foldChange/E066-H3K4me1.fc.signal.bigwig
wget -c http://egg2.wustl.edu/roadmap/data/byFileType/signal/consolidated/macs2signal/foldChange/E066-H3K4me3.fc.signal.bigwig
wget -c http://egg2.wustl.edu/roadmap/data/byFileType/signal/consolidated/macs2signal/foldChange/E066-H3K9ac.fc.signal.bigwig
wget -c http://egg2.wustl.edu/roadmap/data/byFileType/signal/consolidated/macs2signal/foldChange/E066-H3K9me3.fc.signal.bigwig
wget -c http://egg2.wustl.edu/roadmap/data/byFileType/signal/consolidated/macs2signal/foldChange/E066-H3K27ac.fc.signal.bigwig
wget -c http://egg2.wustl.edu/roadmap/data/byFileType/signal/consolidated/macs2signal/foldChange/E066-H3K27me3.fc.signal.bigwig
wget -c http://egg2.wustl.edu/roadmap/data/byFileType/signal/consolidated/macs2signal/foldChange/E066-H3K36me3.fc.signal.bigwig
cd ..
mkdir Lung
cd Lung
wget -c http://egg2.wustl.edu/roadmap/data/byFileType/signal/consolidated/macs2signal/foldChange/E096-H3K4me1.fc.signal.bigwig
wget -c http://egg2.wustl.edu/roadmap/data/byFileType/signal/consolidated/macs2signal/foldChange/E096-H3K4me3.fc.signal.bigwig
wget -c http://egg2.wustl.edu/roadmap/data/byFileType/signal/consolidated/macs2signal/foldChange/E096-H3K9me3.fc.signal.bigwig
wget -c http://egg2.wustl.edu/roadmap/data/byFileType/signal/consolidated/macs2signal/foldChange/E096-H3K27ac.fc.signal.bigwig
wget -c http://egg2.wustl.edu/roadmap/data/byFileType/signal/consolidated/macs2signal/foldChange/E096-H3K27me3.fc.signal.bigwig
wget -c http://egg2.wustl.edu/roadmap/data/byFileType/signal/consolidated/macs2signal/foldChange/E096-H3K36me3.fc.signal.bigwig
cd ..
mkdir Ovary
cd Ovary
wget -c http://egg2.wustl.edu/roadmap/data/byFileType/signal/consolidated/macs2signal/foldChange/E097-DNase.fc.signal.bigwig
wget -c http://egg2.wustl.edu/roadmap/data/byFileType/signal/consolidated/macs2signal/foldChange/E097-H3K4me1.fc.signal.bigwig
wget -c http://egg2.wustl.edu/roadmap/data/byFileType/signal/consolidated/macs2signal/foldChange/E097-H3K4me3.fc.signal.bigwig
wget -c http://egg2.wustl.edu/roadmap/data/byFileType/signal/consolidated/macs2signal/foldChange/E097-H3K9me3.fc.signal.bigwig
wget -c http://egg2.wustl.edu/roadmap/data/byFileType/signal/consolidated/macs2signal/foldChange/E097-H3K27ac.fc.signal.bigwig
wget -c http://egg2.wustl.edu/roadmap/data/byFileType/signal/consolidated/macs2signal/foldChange/E097-H3K27me3.fc.signal.bigwig
wget -c http://egg2.wustl.edu/roadmap/data/byFileType/signal/consolidated/macs2signal/foldChange/E097-H3K36me3.fc.signal.bigwig
cd ..
mkdir Pancreas
cd Pancreas
wget -c http://egg2.wustl.edu/roadmap/data/byFileType/signal/consolidated/macs2signal/foldChange/E098-DNase.fc.signal.bigwig
wget -c http://egg2.wustl.edu/roadmap/data/byFileType/signal/consolidated/macs2signal/foldChange/E098-H3K4me1.fc.signal.bigwig
wget -c http://egg2.wustl.edu/roadmap/data/byFileType/signal/consolidated/macs2signal/foldChange/E098-H3K4me3.fc.signal.bigwig
wget -c http://egg2.wustl.edu/roadmap/data/byFileType/signal/consolidated/macs2signal/foldChange/E098-H3K9me3.fc.signal.bigwig
wget -c http://egg2.wustl.edu/roadmap/data/byFileType/signal/consolidated/macs2signal/foldChange/E098-H3K27ac.fc.signal.bigwig
wget -c http://egg2.wustl.edu/roadmap/data/byFileType/signal/consolidated/macs2signal/foldChange/E098-H3K27me3.fc.signal.bigwig
wget -c http://egg2.wustl.edu/roadmap/data/byFileType/signal/consolidated/macs2signal/foldChange/E098-H3K36me3.fc.signal.bigwig
cd ..
mkdir Thymus
cd Thymus
wget -c http://egg2.wustl.edu/roadmap/data/byFileType/signal/consolidated/macs2signal/foldChange/E112-H3K4me1.fc.signal.bigwig
wget -c http://egg2.wustl.edu/roadmap/data/byFileType/signal/consolidated/macs2signal/foldChange/E112-H3K4me3.fc.signal.bigwig
wget -c http://egg2.wustl.edu/roadmap/data/byFileType/signal/consolidated/macs2signal/foldChange/E112-H3K9me3.fc.signal.bigwig
wget -c http://egg2.wustl.edu/roadmap/data/byFileType/signal/consolidated/macs2signal/foldChange/E112-H3K27ac.fc.signal.bigwig
wget -c http://egg2.wustl.edu/roadmap/data/byFileType/signal/consolidated/macs2signal/foldChange/E112-H3K27me3.fc.signal.bigwig
wget -c http://egg2.wustl.edu/roadmap/data/byFileType/signal/consolidated/macs2signal/foldChange/E112-H3K36me3.fc.signal.bigwig
cd ..
mkdir Spleen
cd Spleen
wget -c http://egg2.wustl.edu/roadmap/data/byFileType/signal/consolidated/macs2signal/foldChange/E113-H3K4me1.fc.signal.bigwig
wget -c http://egg2.wustl.edu/roadmap/data/byFileType/signal/consolidated/macs2signal/foldChange/E113-H3K4me3.fc.signal.bigwig
wget -c http://egg2.wustl.edu/roadmap/data/byFileType/signal/consolidated/macs2signal/foldChange/E113-H3K9me3.fc.signal.bigwig
wget -c http://egg2.wustl.edu/roadmap/data/byFileType/signal/consolidated/macs2signal/foldChange/E113-H3K27ac.fc.signal.bigwig
wget -c http://egg2.wustl.edu/roadmap/data/byFileType/signal/consolidated/macs2signal/foldChange/E113-H3K27me3.fc.signal.bigwig
wget -c http://egg2.wustl.edu/roadmap/data/byFileType/signal/consolidated/macs2signal/foldChange/E113-H3K36me3.fc.signal.bigwig
cd ..