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amjjbonvin committed Nov 23, 2024
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Expand Up @@ -746,7 +746,8 @@ Examine the various models. How does the orientation of the antigen differ betwe

**Note** that the scale in the B-factor field is the inverse of the color coding in the PAE plots:
i.e. red mean reliable (high pLDDT) and blue unreliable (low pLDDT)). If you want to have the inverse coloring
you can use a PyMol plugin, e.g. as described [here](https://github.com/cbalbin-bio/pymol-color-alphafold){:target="\_blank"}</details>
you can use a PyMol plugin, e.g. as described <a href="https://github.com/cbalbin-bio/pymol-color-alphafold" target="_blank">here</a>
</details>
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Since we do have NMR chemical shift perturbation data for the antigen, let's check if the perturbed residues are at the interface in the AF2 models.
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