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*** Error in `cafe': malloc(): smallbin double linked list corrupted: 0x00000000023bb230 *** #97

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rillaxy opened this issue Feb 28, 2022 · 0 comments

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@rillaxy
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rillaxy commented Feb 28, 2022

Hi, when I run cafe(Version: 4.2.1), I met a problem ,it's my code
cafe cafetutorial_run2.sh

it's error formation:

Lambda : 0.00679833848891 & Score: 32365.745004
DONE: Lambda Search or setting, for command:
lambda -s -t ((((1,1)1,(1,1)1)1,(1,1)1)1,1) 
Running Viterbi algorithm....
*** Error in `cafe': malloc(): smallbin double linked list corrupted: 0x00000000023bb230 ***
======= Backtrace: =========
/lib64/libc.so.6(+0x7f5e4)[0x7f8ddb1885e4]
/lib64/libc.so.6(+0x82d00)[0x7f8ddb18bd00]
/lib64/libc.so.6(__libc_calloc+0xb4)[0x7f8ddb18f2c4]
cafe[0x425e76]
cafe[0x426a9e]
cafe[0x416fb4]
cafe[0x4172c6]
cafe[0x4175cc]
cafe[0x40ff89]
cafe[0x458aa2]
cafe[0x451458]
cafe[0x42bf59]
cafe[0x4326a1]
cafe[0x43290b]
cafe[0x40b665]
/lib64/libc.so.6(__libc_start_main+0xf5)[0x7f8ddb12b445]
cafe[0x40b71f]
======= Memory map: ========
00400000-0046d000 r-xp 00000000 fd:05 103266180865                       /home/xiaoye/app/CAFE/release/cafe
0066c000-0066d000 r--p 0006c000 fd:05 103266180865                       /home/xiaoye/app/CAFE/release/cafe
0066d000-0066e000 rw-p 0006d000 fd:05 103266180865                       /home/xiaoye/app/CAFE/release/cafe
0066e000-0066f000 rw-p 00000000 00:00 0 
021f6000-0255e000 rw-p 00000000 00:00 0                                  [heap]
7f8390000000-7f8390021000 rw-p 00000000 00:00 0 
7f8390021000-7f8394000000 ---p 00000000 00:00 0 
7f8398000000-7f8398021000 rw-p 00000000 00:00 0 

but ,when I changed the time of the tree, it run normal.
the file of cafetutorial_run2.sh can't run normal:

#!cafe
load -i filtered_cafe_input.txt -p 0.05 -t 4 -l reports/log_run2.txt
tree ((((A1:6.6854,A2:6.6854):1.9022,(A3:5.2111,A4:5.2111):3.3765):1.0141,(A5:5.6628,A6:5.6628):3.9388):4.8296,B1:14.4313)
lambda -s -t ((((1,1)1,(1,1)1)1,(1,1)1)1,1)
report reports/report_run2

the file of cafetutorial_run2.sh can run normal:

#!cafe
load -i filtered_cafe_input.txt -p 0.05 -t 4 -l reports/log_run2.txt
tree ((((A1:8.3528,A2:8.3528):6.1089,(A3:4.7753,A4:4.7753):9.6865):9.7611,(A5:7.8516,A6:7.8516):16.3713):9.4181,B1:33.6410)
lambda -s -t ((((1,1)1,(1,1)1)1,(1,1)1)1,1)
report reports/report_run2

Looking forward to your answer, thanks
Rilla

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