primary_care and hospital_inpatient data loading code missing?

[cipherome-minkim]

Describe the bug

Load Electronic Health Records
seems to suggest that it can load hesin data, but

1. that code block is missing the actual ukbrest image & command option. it should be more like

$ docker run --rm --net ukb \
-e UKBREST_DB_URI="postgresql://test:test@pg:5432/ukb" \
-v ~/hospital_inpatient:/var/lib/hospital_inpatient \
-v ~/primary_care:/var/lib/primary_care
  hakyimlab/ukbrest --load-???

2. I don't see any code that would load those data files :p

Thanks!

[meliao]

Hello and thank you for your interest in ukbREST!

I updated the documentation just before discovering a few bugs in the SQL schema defined for the EHR. I've discovered that the schema is not robust to all of the possible EHR downloads from the UK Biobank. I am still working on updating the schema.

In the meantime, I have opened a branch EHR_development with the development code in pull request #5.

I'll leave this issue open until I have completed the update to the schema.

In the meantime, please feel free to use the EHR_development branch!

[miltondp]

Thank you, @cipherome-minkim! @meliao, maybe we should update the wiki to reflect the fact that this is in development and not stable yet.

[meliao]

@miltondp Absolutely! I'll do that now.