Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Illumina methylation Epicv2 array probe names matching #281

Open
xli83 opened this issue Dec 26, 2024 · 0 comments
Open

Illumina methylation Epicv2 array probe names matching #281

xli83 opened this issue Dec 26, 2024 · 0 comments

Comments

@xli83
Copy link

xli83 commented Dec 26, 2024

I got some probe names by using following with R minfi package. Use an example to show:
Step (1): w <- readRDS('/x/my_raw.rds')
Then: w2 <- getAnnotation(w, what = "everything")

Step (2): pro_norm <- preprocessNoob(w)
name2 <- rownames(pro_norm@assays@data@listData$Meth)

My question is: why rownames(w2) does not completely matched with “names2” in above process?
Thanks!

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

1 participant