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Feature/extract #44

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Feature/extract #44

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adf5e76
update gitignore
mathias-samuelides Nov 20, 2023
25a5ca5
add script to test extract
mathias-samuelides Nov 21, 2023
d5a961a
in progress
mathias-samuelides Nov 23, 2023
48ead4d
make extract work
mathias-samuelides Nov 24, 2023
74c0354
refact in progress
mathias-samuelides Nov 24, 2023
1798af9
change use_icu type
mathias-samuelides Nov 24, 2023
f50efc7
raw path
mathias-samuelides Nov 24, 2023
c27dbb4
rename file
mathias-samuelides Nov 24, 2023
e9a4e75
icd conversion
mathias-samuelides Nov 25, 2023
94258cc
refact extract
mathias-samuelides Nov 25, 2023
0222f06
minor
mathias-samuelides Nov 25, 2023
db9bf68
fix path in existing code to make it work
mathias-samuelides Nov 25, 2023
abfdb23
remove useless files
mathias-samuelides Nov 25, 2023
5251a46
start feature selection
mathias-samuelides Nov 27, 2023
6bb85a2
first test_feature_selection
mathias-samuelides Nov 27, 2023
0fda4fc
update todo
mathias-samuelides Nov 27, 2023
0357091
minor
mathias-samuelides Nov 27, 2023
29c872e
remove bp
mathias-samuelides Nov 27, 2023
3f6deed
in progress
mathias-samuelides Nov 27, 2023
f5bd0f3
icu feature preprocessing
mathias-samuelides Nov 28, 2023
49a088c
update raw files
mathias-samuelides Nov 28, 2023
b6401a1
non icu features preprocessing
mathias-samuelides Nov 28, 2023
2dcbe51
clean
mathias-samuelides Nov 28, 2023
98199fa
split raw_files
mathias-samuelides Nov 28, 2023
6e79d45
admission inputer file
mathias-samuelides Nov 28, 2023
ec72790
ndc file
mathias-samuelides Nov 28, 2023
f00b154
refact wip
mathias-samuelides Nov 28, 2023
544dafc
rename file
mathias-samuelides Nov 28, 2023
fb65ebc
fix existing model generation icu
mathias-samuelides Nov 29, 2023
68140ad
prediction task
mathias-samuelides Nov 29, 2023
9cb601e
rename rawdataloader
mathias-samuelides Nov 29, 2023
1e1771d
minor
mathias-samuelides Nov 29, 2023
dfaf5a6
preproc files
mathias-samuelides Nov 30, 2023
9ae5d58
minor
mathias-samuelides Nov 30, 2023
6f1be09
minor
mathias-samuelides Nov 30, 2023
3fb5f13
minor
mathias-samuelides Nov 30, 2023
5e28465
refact extractor preprocessing
mathias-samuelides Nov 30, 2023
5cca228
replace path arguments with dataframe
mathias-samuelides Nov 30, 2023
0f06c22
rename ... extractor
mathias-samuelides Nov 30, 2023
409d8a0
review
mathias-samuelides Nov 30, 2023
ecaada1
refact cohort extractor
mathias-samuelides Nov 30, 2023
dcfc65c
refact feature extraction
mathias-samuelides Dec 1, 2023
2f16214
minor
mathias-samuelides Dec 1, 2023
0b39f80
wip
mathias-samuelides Dec 1, 2023
e0a5c98
wip
mathias-samuelides Dec 1, 2023
a69f70d
wip
mathias-samuelides Dec 1, 2023
3dac5da
minor
mathias-samuelides Dec 1, 2023
ef9eb6c
new readme
mathias-samuelides Dec 2, 2023
a9058ec
wip
mathias-samuelides Dec 3, 2023
137934f
wip
mathias-samuelides Dec 4, 2023
ecbe337
feature
mathias-samuelides Dec 4, 2023
1532de5
refact features wip
mathias-samuelides Dec 5, 2023
ac574d9
summary refact
mathias-samuelides Dec 5, 2023
e50a031
remove commented code
mathias-samuelides Dec 5, 2023
ea045de
typo
mathias-samuelides Dec 5, 2023
049a7bd
renaming
mathias-samuelides Dec 5, 2023
7383995
wip
mathias-samuelides Dec 7, 2023
f829005
wip
mathias-samuelides Dec 7, 2023
cdb977e
wip
mathias-samuelides Dec 7, 2023
fb7a740
wip
mathias-samuelides Dec 8, 2023
2e2d8ed
class cohort
mathias-samuelides Dec 8, 2023
5ed6a09
...
mathias-samuelides Dec 8, 2023
6555435
...
mathias-samuelides Dec 8, 2023
56348ba
docstring
mathias-samuelides Dec 8, 2023
9afa74f
.
mathias-samuelides Dec 8, 2023
3b050c5
.
mathias-samuelides Dec 8, 2023
3efe389
minor
mathias-samuelides Dec 8, 2023
0aed766
remove useless code
mathias-samuelides Dec 8, 2023
c5ddc8f
remove hardcoded string
mathias-samuelides Dec 8, 2023
71137b8
.
mathias-samuelides Dec 8, 2023
ad3a114
.
mathias-samuelides Dec 8, 2023
a839fca
test icd converter
mathias-samuelides Dec 8, 2023
7e3c93c
fix
mathias-samuelides Dec 8, 2023
abb194c
.
mathias-samuelides Dec 8, 2023
1c8c680
feature extract_from
mathias-samuelides Dec 8, 2023
1fac5ec
.
mathias-samuelides Dec 8, 2023
c838a90
.
mathias-samuelides Dec 8, 2023
b60b6d6
.
mathias-samuelides Dec 9, 2023
e5b939d
.
mathias-samuelides Dec 9, 2023
08f4973
.
mathias-samuelides Dec 9, 2023
a3ff7bf
.
mathias-samuelides Dec 9, 2023
e39ac67
summarizer
mathias-samuelides Dec 9, 2023
39c70be
.
mathias-samuelides Dec 9, 2023
508ea8c
feature preprocessor
mathias-samuelides Dec 9, 2023
dcf22a7
.
mathias-samuelides Dec 9, 2023
295c41a
generator
mathias-samuelides Dec 10, 2023
275a584
remove cohort fields from feature classes
mathias-samuelides Dec 10, 2023
ce90791
.
mathias-samuelides Dec 10, 2023
7add049
.
mathias-samuelides Dec 10, 2023
c38de8a
gen med
mathias-samuelides Dec 10, 2023
055577a
.
mathias-samuelides Dec 10, 2023
8c89746
.
mathias-samuelides Dec 10, 2023
08a5c32
.
mathias-samuelides Dec 10, 2023
8e045d8
.
mathias-samuelides Dec 10, 2023
01da5f4
empty dict maker
mathias-samuelides Dec 10, 2023
4610bb3
.
mathias-samuelides Dec 10, 2023
17d6b40
temp file
mathias-samuelides Dec 11, 2023
a01dc09
add preproc data to gitignore
mathias-samuelides Dec 11, 2023
2cb620b
debug files and feature name
mathias-samuelides Dec 11, 2023
3c7af19
test with feature name
mathias-samuelides Dec 11, 2023
ca60898
.
mathias-samuelides Dec 11, 2023
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remove useless files
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@mathias-samuelides
mathias-samuelides committed Nov 25, 2023
commit abfdb234187ba2437445dad2b636089d83b6a443
217 changes: 0 additions & 217 deletions data_loader.py
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