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Calculate fixation probability/time #15

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heavywatal opened this issue Apr 25, 2017 · 1 comment
Open

Calculate fixation probability/time #15

heavywatal opened this issue Apr 25, 2017 · 1 comment

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@heavywatal
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heavywatal commented Apr 25, 2017 •
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  • 固定するまで世代交代して勝ち残ったIDを記録する、という作業を
    main.py の中で繰り返し、各IDの固定確率を求める
  • 同時に、固定までにかかったステップ数を記録し、その平均、分散、分布そのものを見てみる
  • 先頭の何個体かを適応度が高い/低い変異体とする条件でやってみて、その結果固定確率がどう変化するかを見る
  • これらを Wright-Fisher と Moran の両方でやる
@heavywatal heavywatal changed the title Calculate fixation probability Calculate fixation probability/time Apr 25, 2017
hamazaki1990 added a commit to hamazaki1990/practice-py that referenced this issue May 3, 2017
@hamazaki1990
heavywatal#15 tochuu
3eeb84d
hamazaki1990 added a commit to hamazaki1990/practice-py that referenced this issue May 3, 2017
@hamazaki1990
approaching heavywatal#15
3f93381
hamazaki1990 added a commit to hamazaki1990/practice-py that referenced this issue May 3, 2017
@hamazaki1990
fixation simulation heavywatal#15
07407b7
hamazaki1990 added a commit to hamazaki1990/practice-py that referenced this issue May 4, 2017
@hamazaki1990
repeat simulation heavywatal#15
776bbc9
@heavywatal
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固定したかどうかを判定する関数などは、Populationクラスのメソッドとして持たせたほうがよりスッキリすると思います。

hamazaki1990 added a commit to hamazaki1990/practice-py that referenced this issue May 4, 2017
@hamazaki1990
heavywatal#15 solving
91f9496
hamazaki1990 added a commit to hamazaki1990/practice-py that referenced this issue May 4, 2017
@hamazaki1990
fighting heavywatal#15
29e52b1
hamazaki1990 added a commit to hamazaki1990/practice-py that referenced this issue May 4, 2017
@hamazaki1990
modified heavywatal#15
14ca8e5
hamazaki1990 added a commit to hamazaki1990/practice-py that referenced this issue May 8, 2017
@hamazaki1990
heavywatal#15 tochuu
33328c8
hamazaki1990 added a commit to hamazaki1990/practice-py that referenced this issue May 8, 2017
@hamazaki1990
approaching heavywatal#15
0b1f391
hamazaki1990 added a commit to hamazaki1990/practice-py that referenced this issue May 8, 2017
@hamazaki1990
fixation simulation heavywatal#15
973a0e7
hamazaki1990 added a commit to hamazaki1990/practice-py that referenced this issue May 8, 2017
@hamazaki1990
repeat simulation heavywatal#15
2a93fe5
hamazaki1990 added a commit to hamazaki1990/practice-py that referenced this issue May 8, 2017
@hamazaki1990
heavywatal#15 solving
a98092f
hamazaki1990 added a commit to hamazaki1990/practice-py that referenced this issue May 8, 2017
@hamazaki1990
fighting heavywatal#15
350904a
hamazaki1990 added a commit to hamazaki1990/practice-py that referenced this issue May 8, 2017
@hamazaki1990
modified heavywatal#15
8ab7b07
hamazaki1990 added a commit to hamazaki1990/practice-py that referenced this issue May 8, 2017
@hamazaki1990
modifying heavywatal#15
c6c25d6
hamazaki1990 added a commit to hamazaki1990/practice-py that referenced this issue May 8, 2017
@hamazaki1990
solved heavywatal#15
d3844fb
heavywatal pushed a commit that referenced this issue May 8, 2017
@hamazaki1990 @heavywatal
Issue 15 fixation (#21)
e103bd6 
* #15 tochuu

* approaching #15

* fixation simulation #15

* repeat simulation #15

* #15 solving

* fighting #15

* modified #15

* modifying #15

* Create class Repeat-moran

* Create class Repeat-moran

* solved #15

* delete function of repeat

* Reduce code redundancy
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