From 4661bc1f7963c3b1c324c841f05043b9c6a64156 Mon Sep 17 00:00:00 2001 From: Kay Robbins <1189050+VisLab@users.noreply.github.com> Date: Wed, 19 Jun 2024 10:56:33 -0500 Subject: [PATCH] Updated READMEs and added hed-standard/owl --- README.md | 77 +- hed-standard.owl | 19603 +++++++++++++++++++++++++ hed.owl | 19603 +++++++++++++++++++++++++ releases/2024-10-06/hed-standard.owl | 19603 +++++++++++++++++++++++++ releases/README.md | 6 +- releases/working/hed.owl | 1899 --- releases/working/hed.properties | 5 - 7 files changed, 58856 insertions(+), 1940 deletions(-) create mode 100644 hed-standard.owl create mode 100644 hed.owl create mode 100644 releases/2024-10-06/hed-standard.owl delete mode 100644 releases/working/hed.owl delete mode 100644 releases/working/hed.properties diff --git a/README.md b/README.md index d1fdfa3..e7d86ae 100644 --- a/README.md +++ b/README.md @@ -1,56 +1,63 @@ +# Hierarchical Event Descriptor Ontology -![Build Status](https://github.com/hed-standard/hed-ontology-test/actions/workflows/qc.yml/badge.svg) -# Hierarchical Event Descriptors +HED (Hierarchical Event Descriptors) is a standardized vocabulary and supporting infrastructure for +annotating experimental metadata and mapping it into the experimental timeline. +See [**HED resources**](https://www.hed-resources.org/en/latest/index.html) for more information about the +HED project. -Description: None +## HED schemas and the HED ontology -More information can be found at http://obofoundry.org/ontology/hed +HED itself consists of a standard vocabulary the (HED standard schema) and specialized +subfield vocabularies (HED library schemas). +These vocabularies are developed and maintained in the +[**hed-schemas**](https://github.com/hed-standard/hed-schamas) GitHub repository. -## Versions +The HED ontology is a representation of the HED schemas as a formal ontology of the HED information space. +Releases of new HED schemas trigger a generation of a new HED ontology +in this repository ([**hed-ontology**](https://github.com/hed-standard/hed-ontology)), +and maintainers of this repository do a new release. +The correspondence between the HED schemas and HED ontology is explained more fully in +[**The HED ontology**](https://hed-specification.readthedocs.io/en/latest/08_HED_ontology.html) +chapter of the [**hed-specification](https://githum.com/hed-standard/hed-specification). -### Stable release versions +## HED namespaces and IRIs -The latest version of the ontology can always be found at: +Each HED entity in the HED information space has a globally unique identifier +of the form `HED_xxxxxxx` where `xxxxxxxx` is a 7-digit number. -http://purl.obolibrary.org/obo/hed.owl +The identifier namespace is assigned as follows: -(note this will not show up until the request has been approved by obofoundry.org) +| Schema | ID Range | Description | +|-------------------------|--------------------|--------------------------------------| +| Structure | 0000001 - 0009999 | Structure elements for HED ontology. | +| Standard | 0010001 - 0039999 | Standard annotation of experiments. | +| Score | 0042000- 0059999 | Annotation by clinical neurologists. | +| Lang | 0062000 - 0079999 | Annotation of language stimuli. | -### Editors' version -Editors of this ontology should use the edit version, [src/ontology/hed-edit.owl](src/ontology/scratch/hed-edit.owl) +## Ontology versions -## Contact +| Version | Contains | Files | Description | +| ------- | --------|----------------------------------------------------------------|-----------------------------------| +| 2024-10-06 | 8.3.0 | `hed.owl`
`hed-standard.owl` | Contains only the standard schema | -Please use this GitHub repository's [Issue tracker](https://github.com/hed-standard/hed-ontology-test/issues) to request new terms/classes or report errors or specific concerns related to the ontology. -## Acknowledgements +### PURLS +These are the PURL values relative to the -This ontology repository was created using the [Ontology Development Kit (ODK)](https://github.com/INCATools/ontology-development-kit). +| PURL | Relative path | +| ---- |----------------------------------------| +| [https://purl.org/hed/hed.owl](https://purl.org/hed/hed.owl) | `./hed.owl` | +| [https://purl.org/hed/hed-standard.owl](https://purl.org/hed/hed-standard.owl) | `./hed-standard.owl` | +| [https://purl.org/hed/releases/2024-10-06/hed.owl](https://purl.org/hed/releases/2024-10-06/hed.owl) | `./releases/2024-10-06/hed.owl` | +| [https://purl.org/hed/releases/2024-10-06/hed.owl](https://purl.org/hed/releases/2024-10-06/hed-standard.owl) | `./releases/2024-10-06/hed-standard.owl` | -Requesting a new term or suggesting an edit of existing terms - -We welcome your contribution to the ontology. If you notice a term is missing or would like to suggest any update (definition, name, synonym, position) of an existing term, please open a new issue following the steps below to submit your request. - -1. Go to the **Issues** tab -2. Open a **New issue** -3. Fill the issue with the following information: - -| | Mandatory information | Optional information | -| ------------- | ------------- | ------------- | -| Requesting a new term | |