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Collection of improvements #37

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Just using galaxyxml in some project. Will collect bugfixes and improvements here.

Will ping when ready.

particularly it has no name attribute that would be required
otherwise there is a name clash with the name attribute of the nodes

before this change the CLI for repeats was

```
if str($i_repeat....) == "when_content"
```

now its

```
if str($i_ACTUAL_REPEAT_NAME....) == "when_content"
```
if the `mako_path` parameter is passed to the `command_line` function
then the path is overwritten, i.e. if the repeat is contained in or
contains other conditionals, repeats, etc they do not appear in the
path of the produced variable.
@bernt-matthias bernt-matthias marked this pull request as draft June 14, 2023 07:06
outer element need to be first
hexylena pushed a commit that referenced this pull request Sep 13, 2023
hexylena added a commit that referenced this pull request Sep 19, 2023
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