diff --git a/readme.md b/readme.md index 80210f4..f537818 100644 --- a/readme.md +++ b/readme.md @@ -8,7 +8,7 @@ -A curated list of R for clinical study reporting docs, talks, tools, examples & articles. Inspired by [Yilong Zhang's Post](https://www.linkedin.com/posts/yilongzhang_creating-a-validated-environment-for-reproducibility-activity-7044529198165594112-DGf4/) and [R for Clinical Study Reporting](https://github.com/elong0527/r4csr/issues/101) by Yilong Zhang, Nan Xiao, Keaven Anderson, and Yalin Zhu. +A curated list of R for end-to-end clinical study reporting docs, talks, tools, examples & articles. Inspired by [Yilong Zhang's Post](https://www.linkedin.com/posts/yilongzhang_creating-a-validated-environment-for-reproducibility-activity-7044529198165594112-DGf4/) and [R for Clinical Study Reporting](https://github.com/elong0527/r4csr/issues/101) by Yilong Zhang, Nan Xiao, Keaven Anderson, and Yalin Zhu. @@ -23,36 +23,54 @@ Improving the quality, accuracy, and reproducibility of clinical study reporting ## Contents - [Featured (new releases)](#featured-new-releases) -- [Analysis and reporting](#analysis-and-reporting) -- [Project management](#reporting-in-r-logi) +- [Support SDTM](#support-sdtm) +- [Generate TLG](#generate-tlg) +- [Reporting in R Logistics](#reporting-in-r-logistics) - [Community](#community) - [Follow](#follow) -**Legend**: 馃摑 PharmaSUG Reports 路 馃挕 examples 路 馃摉 docs 路 馃攲 libraries 路 馃摝 packages 路 馃摴 talks/video +**Legend**: 馃摑 Publications 路 馃挕 examples 路 馃摉 docs 路 馃攲 libraries 路 馃摝 packages 路 馃摴 talks/video ## Featured (new releases) -- 馃摉 [CAMIS: Comparing Analysis Method Implementations in Software](https://psiaims.github.io/CAMIS/) +- 馃摑 [Tplyr 1.2.1 release](https://www.atorusresearch.com/tplyr-1-2-1-release/) +- 馃摝 [{cards} construct CDISC analysis results dataset (ARD) objects](https://github.com/insightsengineering/cards) +## Support SDTM +- 馃摝 [{admiral} develop ADaM datasets in R](https://pharmaverse.github.io/admiral/) +- 馃摝 [{cards} construct CDISC analysis results dataset (ARD) objects](https://github.com/insightsengineering/cards) -## Analysis and reporting +## Generate TLG -- 馃摉 [R for Clinical Study Reports and Submission](https://r4csr.org/) -- 馃摑 [A&R with R in regulated trial environment](https://www.pharmasug.org/proceedings/2021/AD/PharmaSUG-2021-AD-079.pdf) -- 馃摴 [Posit Pharma Meetup: R for Clinical Study Reports & Submission with Yilong Zhang]() -- 馃摝 [{redcapR} pull data from REDCap](https://ouhscbbmc.github.io/REDCapR/) -- 馃摝 [{admiral} develop ADaM datasets in R](https://pharmaverse.github.io/admiral/) -- 馃摝 [{xportr} create CDISC compliant xpt files](https://atorus-research.github.io/xportr/) -- 馃摝 [{r2rtf} production-ready tables and figures in RTF format](https://merck.github.io/r2rtf/) +### Tables + +- 馃摝 [{falcon} standardized table creation functions](https://pharmaverse.github.io/falcon/) - 馃摝 [{gtsummary} create publication-ready analytical and summary tables](https://www.danieldsjoberg.com/gtsummary/) - 馃摝 [{gtreg} `gtsummary` for regulatory submissions](https://shannonpileggi.github.io/gtreg/) +- 馃摝 [{tfrmt} tabular structure from ARD](https://gsk-biostatistics.github.io/tfrmt/) - 馃摝 [{Tplyr} simplify the creation and traceability of common clinical summaries](https://atorus-research.github.io/Tplyr/) - 馃摝 [{vtree} display nested data](https://nbarrowman.github.io/vtree.html) +### Listings +- 馃摝 [{tidytlg} generate TLGs with `tidyverse` tools](https://github.com/pharmaverse/tidytlg) + +### Graphs +- 馃摝 [{ggplot2} standardized plotting with grammar of graphics](https://github.com/tidyverse/ggplot2) +- 馃摝 [{ggsurvfit} `ggplot2` x survival analysis](https://github.com/pharmaverse/ggsurvfit) + ## Reporting in R Logistics +### Learning + +- 馃摴 [Posit Pharma Meetup: R for Clinical Study Reports & Submission with Yilong Zhang]() +- 馃摉 [R for Clinical Study Reports and Submission](https://r4csr.org/) +- 馃摑 [A&R with R in regulated trial environment](https://www.pharmasug.org/proceedings/2021/AD/PharmaSUG-2021-AD-079.pdf) + +### Data aquisition +- 馃摝 [{redcapR} pull data from REDCap](https://ouhscbbmc.github.io/REDCapR/) + ### Project Management - 馃摑 [Late stage clinical trial project management](https://www.pharmasug.org/proceedings/2021/SI/PharmaSUG-2021-SI-083.pdf) @@ -61,10 +79,16 @@ Improving the quality, accuracy, and reproducibility of clinical study reporting - 馃摑 [SDLC in regulated environments](https://www.lexjansen.com/phuse-us/2020/tt/TT12.pdf) - 馃摑 [Specification development of R functions for standardization](https://www.pharmasug.org/proceedings/2021/SI/PharmaSUG-2021-SI-074.pdf) - 馃摑 [Internal R package validation](https://www.pharmasug.org/proceedings/2021/SI/PharmaSUG-2021-SI-084.pdf) -- 馃摑 [External package qualification](https://www.pharmasug.org/proceedings/2022/SI/PharmaSUG-2022-SI-057.pdf) +- 馃摑 [External package qualification](https://www.pharmasug.org/proceedings/2022/SI/PharmaSUG-2022-SI-057.pdf) + +### Export Reports +- 馃摝 [{xportr} create CDISC compliant xpt files](https://atorus-research.github.io/xportr/) +- 馃摝 [{r2rtf} production-ready tables and figures in RTF format](https://merck.github.io/r2rtf/) + ## Community - 馃摉 [pharmaverse](https://pharmaverse.org/) +- 馃摴 [R/Pharma conference](https://rinpharma.com/) - 馃摴 [R/Medicine conference](https://events.linuxfoundation.org/r-medicine/) @@ -72,6 +96,8 @@ Improving the quality, accuracy, and reproducibility of clinical study reporting ## Follow +- 馃摑 [atorus blog](https://www.atorusresearch.com/atorus-blog/) +- 馃摉 [ClinicalTrials CRAN Task View](https://github.com/cran-task-views/ClinicalTrials) Who else should we be following!?