some CLI arguments should be available to all subcommands

[adRn-s]

higlass-manage/higlass_manage/start.py

Line 29 in 44d6023

"--data-dir",

how can I invoke this when using higlass-manage view hic-resolutions.cool (following the README) ?

I tried adding the --data-dir before and after view subcommand but to no avail. Is never known.

I've just edited the site-packages source dir to change the hardcoded ~/hg-data into something that works on my system. That helped, but found another issue (I will open it independently, hope you don't mind my spam...)

PS. ultimately I want to make this work for me and colleagues, a PR to fix some of the issues could come, but tbh the way you abstracted docker is a bit opaque to me at the moment. I have dockerized django apps, but not like this