The source of truth for HITO, excluding software products and related attributes, whose source is the database initially filled by https://github.com/hitontology/database, and catalogues, which are created in spreadsheets and transformed using https://github.com/hitontology/csv2rdf.
To create a combined file, execute the build script, which creates /dist/hito.ttl and /tmp/hito-all.ttl.
This file can then be uploaded to the HITO SPARQL endpoint:
- Login to https://hitontology.eu/conductor/
- Delete graph http://hitontology.eu/ontology at Linked Data -> Graphs -> Graphs
- Upload the file at Linked Data -> Quad Store Upload to the graph http://hitontology.eu
Warning: This will not include updated software products from the database.
Download WIDOCO and make it available as widoco, then run ./doc under Linux to generate the ontology documentation.
Adapt the doc script accordingly on other operating systems.
| file | source of truth | description |
|---|---|---|
| ontology.ttl | here | The HITO ontology |
| database.ttl | here | instances of hito:DatabaseSystem |
| programminglibrary.ttl | here | instances of hito:ProgrammingLibrary |
| standard.ttl | here | instances of hito:Interoperability |
| individual.ttl | here | journal descriptions |
| medfloss.ttl | here | https://www.medfloss.org sources |
| hl7ehrsfm.ttl | csv2rdf | HL7 EHR-S FM catalogues |
| bb.ttl | csv2rdf | "Blue Book" catalogues |
| joshipacs.ttl | csv2rdf | PACS feature catalogue |
| snomed.ttl | csv2rdf | SNOMED catalogues |
| whodhi.ttl | csv2rdf | WHO DHI catalogues |
| swp.ttl | database | software descriptions |
| dist/dbpedia.ttl | DBpedia | (programming) languages and operating systems from DBpedia |
| dist/swo.ttl | SWO | licenses from the Software Ontology (SWO) |
| build | combine all HITO files into one | |
| prefix.ttl | RDF namespace prefixes | |
| dist/hito.ttl | output of build | |
| scripts/doc | ontology documentation build script | |
| scripts/sparql | SPARQL queries | |
| scripts/sparql/swo.sparql | Query on SWO to create dist/swo.ttl | |
| scripts/limes | generate interlinks |
The relevant DBpedia and SWO resources are put under version control in the dist folder to keep the referential integrity of the database.
You do not need to regenerate them but if you do, using /scripts/dbpedia and /scripts/sparql