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Bidentate ligands appear to crash structgen when combined with a linear geometry.
structgen
Example from #235: molsimplify -cores Fe -lig '[N+](=O)([O-])[O-]' -smicat [[3, 4]] -coord 2 -ligocc 1 -spin 1
molsimplify -cores Fe -lig '[N+](=O)([O-])[O-]' -smicat [[3, 4]] -coord 2 -ligocc 1 -spin 1
Traceback (most recent call last): File "/home/dbkchu/programs/miniconda3/envs/mols/bin/molsimplify", line 33, in <module> sys.exit(load_entry_point('molSimplify', 'console_scripts', 'molsimplify')()) File "/home/dbkchu/programs/molSimplify/molSimplify/__main__.py", line 193, in main startgen(args, False, gui) File "/home/dbkchu/programs/molSimplify/molSimplify/Scripts/generator.py", line 255, in startgen emsg = multigenruns(rundir, args, write_files=write_files) File "/home/dbkchu/programs/molSimplify/molSimplify/Scripts/rungen.py", line 308, in multigenruns emsg = rungen(rundir, args, write_files=write_files) File "/home/dbkchu/programs/molSimplify/molSimplify/Scripts/rungen.py", line 615, in rungen args, rootdir, ligands, ligocc, mcount, write_files=write_files) File "/home/dbkchu/programs/molSimplify/molSimplify/Scripts/structgen.py", line 2970, in structgen args, ligands, ligoc) File "/home/dbkchu/programs/molSimplify/molSimplify/Scripts/structgen.py", line 2543, in mcomplex cpoint = m3D.getAtom(batoms[0]) IndexError: list index out of range
The text was updated successfully, but these errors were encountered:
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Bidentate ligands appear to crash
structgen
when combined with a linear geometry.Example from #235:
molsimplify -cores Fe -lig '[N+](=O)([O-])[O-]' -smicat [[3, 4]] -coord 2 -ligocc 1 -spin 1
The text was updated successfully, but these errors were encountered: