Missing HIDIVE Papers

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Missing papers

This issue is updated automatically from a GitHub Action. It lists papers that are in the HIDIVE Zotero collection but are not present in the _publications directory.

Preprints

2024

• FZGEFV8V - Open issue - The‬‭ challenge‬‭ of‬‭ chromatin‬‭ model‬‭ comparison‬‭ and‬‭ validation‬‭ a‬‭ project‬‭ from‬‭ the‬ first international 4D Nucleome Hackathon‬
• A6ZAJIIA - Open issue - An integrated view of the structure and function of the human 4D nucleome
• VV9LCAJ5 - Open issue - Data-driven prioritization of genetic disorders for global genomic newborn screening programs

2023

• 4LPK46NQ - Open issue - Characterizing the use of the ICD-10 Code for Long COVID in 3 US Healthcare Systems

2022

• KE2E52KN - Open issue - New Ways for Patients to Make Sense of Their EHR Data Using the Discovery Web-application: A Qualitative Evaluation Study
• F2P6MVFB - Open issue - Improving the Utility and Usability of Visualization in AI-driven Scientific Discovery

2019

• ITQAQG6Q - Open issue - Data integration and visualization at the 4D nucleome data portal

2018

• CPD25F4N - Open issue - Refinery: a data management, analysis, and visualization platform utilizing the Galaxy workbench

2016

• 86EADFQR - Open issue - Advantages and challenges of using Galaxy CloudMan within an integrated data analysis and visualization platform
• RGLTM9F7 - Open issue - Reproducible Research in the Cloud with the Refinery Platform

Publications

2024

• 9X8PFMGP - Open issue - AltGosling: Automatic Generation of Text Descriptions for Accessible Genomics Data Visualization
• P3XRGF6H - Open issue - Explaining Unfamiliar Genomics Data Visualizations to a Blind Individual through Transitions

2023

• 39VKUE8V - Open issue - Alerts and Collections for Automating Patients’ Sensemaking and Organizing of Their Electronic Health Record Data for Reflection, Planning, and Clinical Visits: Qualitative Research-Through-Design Study
• UWYNXLDL - Open issue - New Ways for Patients to Make Sense of Their Electronic Health Record Data Using the Discovery Web Application: Think-Aloud Evaluation Study
• HKP4URQG - Open issue - Acute respiratory distress syndrome after SARS-CoV-2 infection on young adult population: International observational federated study based on electronic health records through the 4CE consortium
• P8JV3HLJ - Open issue - Author Correction: Comprehensive analysis of chromothripsis in 2,658 human cancers using whole-genome sequencing
• G2D3XFKM - Open issue - Characterization of long COVID temporal sub-phenotypes by distributed representation learning from electronic health record data: a cohort study
• A4WS32CW - Open issue - Clinical phenotypes and outcomes in children with multisystem inflammatory syndrome across SARS-CoV-2 variant eras: a multinational study from the 4CE consortium
• 3LM2GF9G - Open issue - How surgeons use risk calculators and non-clinical factors for informed consent and shared decision making: A qualitative study
• 4KXBQ4SA - Open issue - Long-term kidney function recovery and mortality after COVID-19-associated acute kidney injury: an international multi-centre observational cohort study

2022

• PTTMFJJC - Open issue - Hospitalizations Associated With Mental Health Conditions Among Adolescents in the US and France During the COVID-19 Pandemic
• VEIGTHFR - Open issue - International electronic health record-derived post-acute sequelae profiles of COVID-19 patients
• QDRF2DBQ - Open issue - Effective Communication of Personalized Risks and Patient Preferences During Surgical Informed Consent Using Data Visualization: Qualitative Semistructured Interview Study With Patients After Surgery
• KL7K9CEJ - Open issue - SurvMaximin: Robust federated approach to transporting survival risk prediction models
• A4NCA7UC - Open issue - Neurological Diagnoses in Hospitalized COVID-19 Patients Associated With Adverse Outcomes: A Multinational Cohort Study

2021

• AFZRMX2V - Open issue - Authorship Correction: International Changes in COVID-19 Clinical Trajectories Across 315 Hospitals and 6 Countries: Retrospective Cohort Study
• V5C76N3K - Open issue - Multinational characterization of neurological phenotypes in patients hospitalized with COVID-19
• 8Q9FW4QW - Open issue - National Trends in Disease Activity for COVID-19 Among Children in the US
• SAJM53X2 - Open issue - Validation of an internationally derived patient severity phenotype to support COVID-19 analytics from electronic health record data
• 7IJVBBCY - Open issue - What Every Reader Should Know About Studies Using Electronic Health Record Data but May Be Afraid to Ask
• H28UFSKE - Open issue - Interactive Visual Explanations for Deep Drug Repurposing
• KEE539D9 - Open issue - Evolving phenotypes of non-hospitalized patients that indicate long COVID

2020

• MEW9NIJN - Open issue - Making Tools that People Will Use: User-Centered Design in Computational Biology Research

2018

• 89TUQ9CY - Open issue - Integrative Molecular Characterization of Malignant Pleural Mesothelioma
• X893GCKP - Open issue - A Pan-Cancer Analysis Reveals High-Frequency Genetic Alterations in Mediators of Signaling by the TGF-β Superfamily
• VUN23XIB - Open issue - An Integrated TCGA Pan-Cancer Clinical Data Resource to Drive High-Quality Survival Outcome Analytics
• 8ZHR7LZH - Open issue - Comprehensive Analysis of Alternative Splicing Across Tumors from 8,705 Patients
• 2M3JBKXY - Open issue - Comprehensive Molecular Characterization of the Hippo Signaling Pathway in Cancer
• 9Y3LKVA9 - Open issue - Genomic and Functional Approaches to Understanding Cancer Aneuploidy
• B45VY8YI - Open issue - Genomic and Molecular Landscape of DNA Damage Repair Deficiency across The Cancer Genome Atlas
• KJI2PPLP - Open issue - Somatic Mutational Landscape of Splicing Factor Genes and Their Functional Consequences across 33 Cancer Types
• CLFCW2QY - Open issue - Spatial Organization and Molecular Correlation of Tumor-Infiltrating Lymphocytes Using Deep Learning on Pathology Images
• RUHRLPXK - Open issue - The Immune Landscape of Cancer
• MCKBZ59E - Open issue - The Integrated Genomic Landscape of Thymic Epithelial Tumors
• IWMTJ29F - Open issue - Machine Learning Detects Pan-cancer Ras Pathway Activation in The Cancer Genome Atlas
• X2S3HCY8 - Open issue - Machine Learning Identifies Stemness Features Associated with Oncogenic Dedifferentiation
• CFJVH6LE - Open issue - Molecular Characterization and Clinical Relevance of Metabolic Expression Subtypes in Human Cancers
• FNMDGYQD - Open issue - Pan-cancer Alterations of the MYC Oncogene and Its Proximal Network across the Cancer Genome Atlas
• 98YGFHSQ - Open issue - Systematic Analysis of Splice-Site-Creating Mutations in Cancer
• DGPPURW9 - Open issue - Pathogenic Germline Variants in 10,389 Adult Cancers
• VB8KUWPA - Open issue - Integrated Genomic Analysis of the Ubiquitin Pathway across Cancer Types
• L33PRR9J - Open issue - Driver Fusions and Their Implications in the Development and Treatment of Human Cancers
• VWQTN2HR - Open issue - Integrated Molecular Characterization of Testicular Germ Cell Tumors
• QRCZCI5S - Open issue - Scalable Open Science Approach for Mutation Calling of Tumor Exomes Using Multiple Genomic Pipelines
• VWXCMIMY - Open issue - The Cancer Genome Atlas Comprehensive Molecular Characterization of Renal Cell Carcinoma
• GIBRQPC2 - Open issue - Cell-of-Origin Patterns Dominate the Molecular Classification of 10,000 Tumors from 33 Types of Cancer
• 265ZABMR - Open issue - Oncogenic Signaling Pathways in The Cancer Genome Atlas
• D9BT5JCH - Open issue - Pan-Cancer Analysis of lncRNA Regulation Supports Their Targeting of Cancer Genes in Each Tumor Context
• 5QEKCNQI - Open issue - A Pan-Cancer Analysis of Enhancer Expression in Nearly 9000 Patient Samples
• Y6FA8G2G - Open issue - Genomic, Pathway Network, and Immunologic Features Distinguishing Squamous Carcinomas
• 7J7S4IBW - Open issue - A comprehensive Pan-Cancer molecular study of gynecologic and breast cancers
• N3K6W6SJ - Open issue - Comprehensive Characterization of Cancer Driver Genes and Mutations
• KBTKBLBA - Open issue - Visualization of Biological Data - Crossroads (Dagstuhl Seminar 18161)

2019

• AH8QFAMT - Open issue - Precision VISSTA: Bring-Your-Own-Device (BYOD) mHealth Data for Precision Health.
• RR7PK3NK - Open issue - Upset 2: From prototype to tool

2017

• EF3RU9WH - Open issue - Integrated Genomic Characterization of Pancreatic Ductal Adenocarcinoma
• YBGUMKZJ - Open issue - Integrative Analysis Identifies Four Molecular and Clinical Subsets in Uveal Melanoma
• A2BS2N2H - Open issue - Integrative Genomic Analysis of Cholangiocarcinoma Identifies Distinct IDH-Mutant Molecular Profiles
• L6CJ49NC - Open issue - Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma
• NRPVLULF - Open issue - Comprehensive and Integrated Genomic Characterization of Adult Soft Tissue Sarcomas

2016

• 67A8XVNB - Open issue - TaCo: Comparative Visualization of Large Tabular Data

2015

• 5MERTEFS - Open issue - Points of View: Temporal data
• QQSJTBM9 - Open issue - Response to "Plotting intersections" by Lentini
• PE3CB7ST - Open issue - Caleydo Web: An Integrated Visual Analysis Platform for Biomedical Data
• W4ZAUNIY - Open issue - Interactive Visualization of Provenance Graphs for Reproducible Biomedical Research

2014

• IZKYZ3XI - Open issue - The Somatic Genomic Landscape of Chromophobe Renal Cell Carcinoma
• IZQAUFGF - Open issue - Transparent layering for visualizing dynamic graphs using the flip book metaphor

2011

• UG7ZT8CI - Open issue - Seqeyes: A multi-scale interactive visualization tool for structural variations

2007

• Q3NIZRYA - Open issue - Targeted MS Analysis of beta-Cell Surface Proteins

2006

• 2KK8HJBA - Open issue - A computational framework for systems biology approaches using LC-MS based comparative proteomics

2003

• Q2XVF9ZP - Open issue - CLIMP-Cluster-based Imputation of Missing Values in Microarray Data

Last updated: 2024-11-25T00:31:04.280Z