Cleanup

hms-dbmi · Oct 9, 2024 · 0fb5346 · 0fb5346
1 parent 60f34de
commit 0fb5346
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Showing 2 changed files with 1 addition and 3 deletions.
diff --git a/data/src/main/java/edu/harvard/hms/dbmi/avillach/hpds/data/genotype/VariantStore.java b/data/src/main/java/edu/harvard/hms/dbmi/avillach/hpds/data/genotype/VariantStore.java
@@ -27,7 +27,7 @@ public class VariantStore implements Serializable {
 	private String[] patientIds;
 
 	private transient String[] variantSpecIndex;
-	
+
 	private Map<String, FileBackedJsonIndexStorage<Integer, ConcurrentHashMap<String, VariableVariantMasks>>> variantMaskStorage = new TreeMap<>();
 
 	public Map<String, FileBackedJsonIndexStorage<Integer, ConcurrentHashMap<String, VariableVariantMasks>>> getVariantMaskStorage() {

diff --git a/...rc/main/java/edu/harvard/hms/dbmi/avillach/hpds/processing/PatientVariantJoinHandler.java b/...rc/main/java/edu/harvard/hms/dbmi/avillach/hpds/processing/PatientVariantJoinHandler.java
@@ -85,13 +85,11 @@ public VariantMask getPatientIdsForIntersectionOfVariantSets(Set<Integer> patien
                             VariantMask homozygousMask = masks.homozygousMask;
                             if (heterozygousMask != null) {
                                 synchronized(matchingPatients) {
-                                    log.debug("Patients with variant " + variantSpec + ": " + (heterozygousMask.bitCount()));
                                     matchingPatients[0] = matchingPatients[0].union(heterozygousMask);
                                 }
                             }
                             if (homozygousMask != null) {
                                 synchronized(matchingPatients) {
-                                    log.debug("Patients with variant " + variantSpec + ": " + (homozygousMask.bitCount()));
                                     matchingPatients[0] = matchingPatients[0].union(homozygousMask);
                                 }
                             }