Fix wrong path for genomic data config

hms-dbmi · Feb 13, 2024 · 94db00b · 94db00b
1 parent f42ab16
commit 94db00b
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/...g/src/main/java/edu/harvard/hms/dbmi/avillach/hpds/processing/GenomicProcessorConfig.java b/...g/src/main/java/edu/harvard/hms/dbmi/avillach/hpds/processing/GenomicProcessorConfig.java
@@ -50,7 +50,7 @@ public GenomicProcessor localPatientDistributedGenomicProcessor() {
 
         for (File directory : directories) {
             List<GenomicProcessor> genomicProcessors = Flux.range(1, 22)
-                    .flatMap(i -> Mono.fromCallable(() -> (GenomicProcessor) new GenomicProcessorNodeImpl(hpdsGenomicDataDirectory + "/" + i + "/")).subscribeOn(Schedulers.boundedElastic()))
+                    .flatMap(i -> Mono.fromCallable(() -> (GenomicProcessor) new GenomicProcessorNodeImpl(directory.getAbsolutePath() + "/" + i + "/")).subscribeOn(Schedulers.boundedElastic()))
                     .collectList()
                     .block();
             genomicProcessors.add(new GenomicProcessorNodeImpl(directory + "/X/"));