From c0a944508c1b051d29428530fe2ffe67f2cf5b11 Mon Sep 17 00:00:00 2001
From: Ryan Amari <ramari16@gmail.com>
Date: Fri, 1 Mar 2024 06:38:36 -0500
Subject: [PATCH] Add loging

---
 .../dbmi/avillach/hpds/etl/genotype/GenomicDatasetMerger.java   | 2 ++
 1 file changed, 2 insertions(+)

diff --git a/etl/src/main/java/edu/harvard/hms/dbmi/avillach/hpds/etl/genotype/GenomicDatasetMerger.java b/etl/src/main/java/edu/harvard/hms/dbmi/avillach/hpds/etl/genotype/GenomicDatasetMerger.java
index ea94f7c7..ae2c580a 100644
--- a/etl/src/main/java/edu/harvard/hms/dbmi/avillach/hpds/etl/genotype/GenomicDatasetMerger.java
+++ b/etl/src/main/java/edu/harvard/hms/dbmi/avillach/hpds/etl/genotype/GenomicDatasetMerger.java
@@ -226,6 +226,7 @@ public FileBackedJsonIndexStorage<Integer, ConcurrentHashMap<String, VariableVar
             Map<String, VariableVariantMasks> masks1 = variantMaskStorage1.get(key);
             Map<String, VariableVariantMasks> masks2 = variantMaskStorage2.get(key);
             if (masks2 == null) {
+                log.info("Key " + key + " not found in dataset 2");
                 masks2 = Map.of();
             }
 
@@ -251,6 +252,7 @@ public FileBackedJsonIndexStorage<Integer, ConcurrentHashMap<String, VariableVar
 
         variantMaskStorage2.keys().forEach(key -> {
             if (variantMaskStorage1.get(key) == null) {
+                log.info("Key " + key + " not found in dataset 1");
                 ConcurrentHashMap<String, VariableVariantMasks> mergedMasks = new ConcurrentHashMap<>();
                 Map<String, VariableVariantMasks> masks2 = variantMaskStorage2.get(key);
                 for (Map.Entry<String, VariableVariantMasks> entry : masks2.entrySet()) {