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pyproject.toml
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pyproject.toml
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[project]
name = "mne-bids-pipeline"
# Keep in sync with README.md:
description = "A full-flegded processing pipeline for your MEG and EEG data"
readme = "README.md"
requires-python = ">=3.8"
license = {file = "LICENSE.txt"}
keywords = ["science", "neuroscience", "psychology"]
authors = [
{name = "Eric Larson"},
{name = "Alexandre Gramfort"},
{name = "Mainak Jas"},
{name = "Richard Höchenberger", email = "[email protected]"},
]
classifiers = [
"Intended Audience :: Science/Research",
"Programming Language :: Python"
]
dependencies = [
"typing_extensions; python_version < '3.8'",
"importlib_metadata; python_version < '3.8'",
"psutil", # for joblib
"packaging",
"joblib >= 0.14",
"threadpoolctl",
"dask[distributed]",
"bokeh < 3", # for distributed dashboard
"jupyter-server-proxy", # to have dask and jupyter working together
"scikit-learn",
"pandas",
"seaborn",
"json_tricks",
"rich",
"python-picard",
"qtpy",
"pyvista",
"pyvistaqt",
"openpyxl",
"autoreject",
"mne[hdf5] >=1.2",
"mne-bids[full]",
"filelock",
"setuptools >=65",
]
dynamic = ["version"]
[project.optional-dependencies]
tests = [
"pytest",
"pytest-cov",
"psutil",
"datalad",
"ruff",
"mkdocs",
"mkdocs-material >= 9.0.4",
"mkdocs-material-extensions",
"mkdocs-macros-plugin",
"mkdocs-include-markdown-plugin",
"mkdocstrings-python",
"mike",
"jinja2",
"black", # function signature formatting
"livereload",
"openneuro-py >= 2022.2.0",
"httpx >= 0.20",
"tqdm",
"Pygments",
"pyyaml",
]
[project.scripts]
mne_bids_pipeline = "mne_bids_pipeline._main:main"
[project.urls]
homepage = "https://mne.tools/mne-bids-pipeline"
repository = "https://github.com/mne-tools/mne-bids-pipeline"
changelog = "http://mne.tools/mne-bids-pipeline/changes.html"
[build-system]
requires = ["setuptools>=45", "setuptools_scm[toml]>=6.2", "wheel"]
build-backend = "setuptools.build_meta"
[tool.setuptools_scm]
tag_regex = "^(?P<prefix>v)?(?P<version>[0-9.]+)(?P<suffix>.*)?$"
version_scheme = "release-branch-semver"
[tool.setuptools.packages.find]
exclude = ["false"] # on CircleCI this folder appears during pip install -ve. for an unknown reason
[tool.setuptools.package-data]
"mne_bids_pipeline.steps.freesurfer.contrib" = ["version"]
[tool.codespell]
skip = "docs/site/*,*.html,steps/freesurfer/contrib/*"
ignore-words = "ignore_words.txt"
builtin = "clear,rare,informal,names,usage"
quiet-level = 3
interactive = 3
enable-colors = ""
count = ""
[tool.pytest.ini_options]
addopts = "-ra -vv --tb=short --cov=mne_bids_pipeline --cov-report= --junit-xml=junit-results.xml --durations=10"
testpaths = [
"mne_bids_pipeline",
]
junit_family = "xunit2"
[tool.ruff]
exclude = ["**/freesurfer/contrib", "dist/" , "build/"]
[tool.black]
exclude = "(.*/freesurfer/contrib/.*)|(dist/)|(build/)"