Update CI with latest versions

.github/workflows/clang-format-check.yml

@@ -7,12 +7,12 @@ jobs:
     runs-on: ubuntu-latest
     if: "!contains(github.event.head_commit.message, 'skip-ci')"
     steps:
-    - uses: actions/checkout@v2
+    - uses: actions/[email protected]
+
     - name: Run clang-format style check for C programs.
-      uses: DoozyX/clang-format-lint-action@v0.11
+      uses: DoozyX/clang-format-lint-action@v0.18.2
       with:
         source: '.'
         extensions: 'c,h,cpp,hpp'
         clangFormatVersion: 10
         style: file
-        # exclude: './config'

.github/workflows/clang-format-fix.yml

@@ -1,26 +1,45 @@
-name: clang-format Commit Chanages
+# NOTE: This action requires write permissions to be set in your GitHub
+#       repo/fork for it to be able to commit changes.
+#
+# This is currently enabled via:
+#
+#   settings > Actions > General > Workflow permissions
+#
+# which you will need to set to "Read and write permissions"
+#
+name: clang-format Commit Changes
 on: 
   workflow_dispatch:
   push:
+    paths-ignore:
+      - '**.md'
+      - '**.txt'
+      - 'docs/**'
+
+permissions:
+  contents: write
+
 jobs:
   formatting-check:
     name: Commit Format Changes
     runs-on: ubuntu-latest
     if: "!contains(github.event.head_commit.message, 'skip-ci')"
     permissions:
-      contents: write # In order to allow EndBug/add-and-commit to commit changes
+        contents: write # In order to allow EndBug/add-and-commit to commit changes
     steps:
-    - uses: actions/checkout@v3
+    - uses: actions/[email protected]
+
     - name: Fix C formatting issues detected by clang-format
-      uses: DoozyX/clang-format-lint-action@v0.13
+      uses: DoozyX/clang-format-lint-action@v0.18.2
       with:
         source: '.'
         extensions: 'c,h,cpp,hpp'
         clangFormatVersion: 10
         inplace: True
         style: file
         # exclude: './config '
-    - uses: EndBug/add-and-commit@v9
+
+    - uses: EndBug/add-and-commit@a94899bca583c204427a224a7af87c02f9b325d5 # v9.1.4
       with:
           author_name: github-actions
           author_email: github-actions[bot]@users.noreply.github.com

.github/workflows/linux.yml

@@ -42,9 +42,9 @@ jobs:
           sudo apt-get install libtool
           sudo apt install cmake uuid-dev
           # hdf5
-          wget https://github.com/HDFGroup/hdf5/releases/download/hdf5_1.14.6/hdf5-1.14.6.tar.gz
-          tar xzf hdf5-1.14.6.tar.gz
-          mv hdf5-1.14.6 hdf5
+          wget https://github.com/HDFGroup/hdf5/releases/download/hdf5_1.14.5/hdf5-1.14.5.tar.gz
+          tar xzf hdf5-1.14.5.tar.gz
+          mv hdf5-1.14.5 hdf5
           # libfabric 1.20.1
           wget https://github.com/ofiwg/libfabric/archive/refs/tags/v1.20.1.tar.gz
           tar xf v1.20.1.tar.gz