DESCRIPTION

Package: retnfit
Type: Package
Title: Fitting ternary network models using replica exchange Monte
        Carlo
Version: 0.99.17
Date: 2018-01-09
Author: Harry A. Stern <hstern2@ur.rochester.edu>, 
    Matthew N. McCall <mccallm@gmail.com>
Authors@R: c(
    person("Stern", "Harry",
           email="hstern2@ur.rochester.edu",
           role=c("aut","cre")),
    person("McCall", "Matthew", role="aut"))
Description: This package provides an implementation of the 
    replica exchange Monte Carlo algorithm for fitting 
    ternary network models of gene regulatory networks.
    The input is a data frame containing five columns:
    an experiment index, a node index, an outcome (-1/0/1),
    the cost function for that outcome,
    and a boolean value indicating whether this experiment/node
    is an applied perturbation.  The model is the same as the
    ternarynet package; this is a parallel implementation that
    can run on multiple processors using Rmpi.
License: GPL-3
Imports: BiocParallel
Suggests: testthat
Enhances: Rmpi, snow
NeedsCompilation: yes
biocViews: Software, CellBiology, GraphAndNetwork, GeneTarget, Network
Packaged: 2018-01-09 17:40:43 UTC; hstern2
RoxygenNote: 6.0.1