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Gather specific metadata from files in LC-MS and scRNA-Seq data #286

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shirey opened this issue Jan 24, 2023 · 1 comment
Open

Gather specific metadata from files in LC-MS and scRNA-Seq data #286

shirey opened this issue Jan 24, 2023 · 1 comment
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@shirey
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shirey commented Jan 24, 2023

Create an endpoint that takes

  • dataset uuid
  • file name (relative path)

And produces:

  • Mass spec instrument method
  • LC instrument method
  • Running parameters of the raw file
  • Some other statistics of the data
  • HD5 data, we will need the data structure of the file (database scheme) and number of data points

This is in support of file Epic 21) which will eventually store this data in the files indices

@shirey shirey added the P label Jan 24, 2023
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shirey commented Feb 6, 2023

Blocked until we get the code from Tom Gao's student at UIC.

@shirey shirey added the Blocked label Feb 6, 2023
@shirey shirey added this to Pitt HIVE Jun 7, 2024
@shirey shirey moved this to Ready in Pitt HIVE Jun 7, 2024
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