-
Notifications
You must be signed in to change notification settings - Fork 0
/
sarscoverage.yml
262 lines (262 loc) · 8.26 KB
/
sarscoverage.yml
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
name: sarscoverage
channels:
- anaconda
- plotly
- conda-forge
- bioconda
- defaults
dependencies:
- _libgcc_mutex=0.1=conda_forge
- _openmp_mutex=4.5=1_gnu
- _r-mutex=1.0.1=anacondar_1
- binutils_impl_linux-64=2.35.1=h193b22a_2
- binutils_linux-64=2.35=h67ddf6f_30
- bwidget=1.9.14=ha770c72_0
- bzip2=1.0.8=h7f98852_4
- c-ares=1.17.1=h7f98852_1
- ca-certificates=2024.8.30=hbcca054_0
- cairo=1.16.0=h7979940_1007
- certifi=2024.8.30=pyhd8ed1ab_0
- click=7.1.2=pyh9f0ad1d_0
- curl=7.75.0=h979ede3_0
- cycler=0.12.1=pyhd8ed1ab_0
- dos2unix=7.4.1=0
- fontconfig=2.13.1=hba837de_1004
- freetype=2.10.4=h0708190_1
- fribidi=1.0.10=h36c2ea0_0
- gcc_impl_linux-64=9.3.0=h70c0ae5_18
- gcc_linux-64=9.3.0=hf25ea35_30
- gettext=0.19.8.1=h0b5b191_1005
- gfortran_impl_linux-64=9.3.0=hc4a2995_18
- gfortran_linux-64=9.3.0=hdc58fab_30
- graphite2=1.3.13=h58526e2_1001
- gsl=2.6=he838d99_2
- gxx_impl_linux-64=9.3.0=hd87eabc_18
- gxx_linux-64=9.3.0=h3fbe746_30
- harfbuzz=2.7.4=h5cf4720_0
- icu=68.1=h58526e2_0
- jpeg=9d=h36c2ea0_0
- kernel-headers_linux-64=2.6.32=h77966d4_13
- kiwisolver=1.3.1=py39h1a9c180_1
- krb5=1.17.2=h926e7f8_0
- lcms2=2.12=hddcbb42_0
- ld_impl_linux-64=2.35.1=hea4e1c9_2
- libblas=3.9.0=8_openblas
- libcblas=3.9.0=8_openblas
- libcurl=7.75.0=hc4aaa36_0
- libedit=3.1.20191231=he28a2e2_2
- libev=4.33=h516909a_1
- libffi=3.3=h58526e2_2
- libgcc-devel_linux-64=9.3.0=h7864c58_18
- libgcc-ng=9.3.0=h2828fa1_18
- libgfortran-ng=9.3.0=hff62375_18
- libgfortran5=9.3.0=hff62375_18
- libglib=2.66.7=h3e27bee_1
- libgomp=9.3.0=h2828fa1_18
- libiconv=1.16=h516909a_0
- liblapack=3.9.0=8_openblas
- libnghttp2=1.43.0=h812cca2_0
- libopenblas=0.3.12=pthreads_h4812303_1
- libpng=1.6.37=h21135ba_2
- libssh2=1.9.0=ha56f1ee_6
- libstdcxx-devel_linux-64=9.3.0=hb016644_18
- libstdcxx-ng=9.3.0=h6de172a_18
- libtiff=4.2.0=hdc55705_0
- libuuid=2.32.1=h7f98852_1000
- libwebp-base=1.2.0=h7f98852_0
- libxcb=1.13=h7f98852_1003
- libxml2=2.9.10=h72842e0_3
- lz4-c=1.9.3=h9c3ff4c_0
- make=4.3=hd18ef5c_1
- matplotlib-base=3.4.2=py39h2fa2bec_0
- ncurses=6.2=h58526e2_4
- numpy=1.20.1=py39hdbf815f_0
- olefile=0.47=pyhd8ed1ab_0
- openssl=1.1.1k=h7f98852_0
- pandas=1.2.3=py39hde0f152_0
- pandoc=2.12=h7f98852_0
- pango=1.42.4=h69149e4_5
- pcre=8.44=he1b5a44_0
- pcre2=10.36=h032f7d1_1
- pillow=8.1.2=py39hf95b381_0
- pip=21.0.1=pyhd8ed1ab_0
- pixman=0.40.0=h36c2ea0_0
- plotly=4.14.3=py_0
- pthread-stubs=0.4=h36c2ea0_1001
- pycountry=20.7.3=pyh9f0ad1d_0
- pyparsing=3.1.4=pyhd8ed1ab_0
- python=3.9.2=hffdb5ce_0_cpython
- python-dateutil=2.8.1=py_0
- python_abi=3.9=1_cp39
- pytz=2021.1=pyhd8ed1ab_0
- r=4.0=r40_1004
- r-askpass=1.1=r40hcdcec82_2
- r-assertthat=0.2.1=r40h6115d3f_2
- r-backports=1.2.1=r40hcfec24a_0
- r-base=4.0.3=h8ff2632_7
- r-base64enc=0.1_3=r40hcdcec82_1004
- r-binom=1.1_1=r40hcdcec82_1002
- r-bitops=1.0_7=r40hcfec24a_0
- r-blob=1.2.1=r40h6115d3f_1
- r-boot=1.3_27=r40hc72bb7e_0
- r-brio=1.1.1=r40hcfec24a_0
- r-broom=0.7.5=r40hc72bb7e_0
- r-callr=3.5.1=r40h142f84f_0
- r-cellranger=1.1.0=r40h6115d3f_1003
- r-class=7.3_18=r40hcfec24a_0
- r-cli=2.3.1=r40hc72bb7e_0
- r-clipr=0.7.1=r40h142f84f_0
- r-cluster=2.1.1=r40h859d828_0
- r-codetools=0.2_18=r40hc72bb7e_0
- r-colorspace=2.0_0=r40h9e2df91_0
- r-countrycode=1.2.0=r40h6115d3f_0
- r-cpp11=0.2.6=r40hc72bb7e_0
- r-crayon=1.4.1=r40hc72bb7e_0
- r-crosstalk=1.1.1=r40hc72bb7e_0
- r-curl=4.3=r40hcdcec82_1
- r-d3heatmap=0.6.1.2=r40h6115d3f_1003
- r-data.table=1.14.0=r40hcfec24a_0
- r-dbi=1.1.1=r40hc72bb7e_0
- r-dbplyr=2.1.0=r40hc72bb7e_0
- r-dendextend=1.14.0=r40h6115d3f_0
- r-desc=1.3.0=r40hc72bb7e_0
- r-diffobj=0.3.3=r40hcfec24a_0
- r-digest=0.6.27=r40h1b71b39_0
- r-doparallel=1.0.17=r40hc72bb7e_0
- r-dplyr=1.0.5=r40h03ef668_0
- r-ellipsis=0.3.1=r40hcdcec82_0
- r-evaluate=0.14=r40h6115d3f_2
- r-fansi=0.4.2=r40hcfec24a_0
- r-farver=2.1.0=r40h03ef668_0
- r-forcats=0.5.1=r40hc72bb7e_0
- r-foreach=1.5.2=r40hc72bb7e_0
- r-foreign=0.8_81=r40hcfec24a_0
- r-fs=1.5.0=r40h0357c0b_0
- r-generics=0.1.0=r40hc72bb7e_0
- r-getopt=1.20.3=r40_2
- r-ggplot2=3.3.3=r40hc72bb7e_0
- r-glue=1.4.2=r40hcfec24a_0
- r-gridextra=2.3=r40h6115d3f_1003
- r-gtable=0.3.0=r40h6115d3f_3
- r-haven=2.3.1=r40hde08347_0
- r-hexbin=1.28.2=r40h859d828_0
- r-highr=0.8=r40h6115d3f_2
- r-hms=1.0.0=r40hc72bb7e_0
- r-htmltools=0.5.1.1=r40h03ef668_0
- r-htmlwidgets=1.5.3=r40hc72bb7e_0
- r-httr=1.4.2=r40h6115d3f_0
- r-isoband=0.2.4=r40h03ef668_0
- r-iterators=1.0.14=r40hc72bb7e_0
- r-jsonlite=1.7.2=r40hcfec24a_0
- r-kernsmooth=2.23_18=r40h742201e_0
- r-knitr=1.31=r40hc72bb7e_0
- r-labeling=0.4.2=r40h142f84f_0
- r-later=1.1.0.1=r40h0357c0b_0
- r-lattice=0.20_41=r40hcfec24a_3
- r-lazyeval=0.2.2=r40hcdcec82_2
- r-lifecycle=1.0.0=r40hc72bb7e_0
- r-lubridate=1.7.10=r40h03ef668_0
- r-magrittr=2.0.1=r40hcfec24a_1
- r-markdown=1.1=r40hcfec24a_1
- r-mass=7.3_53.1=r40hcfec24a_0
- r-matrix=1.3_2=r40he454529_0
- r-mgcv=1.8_34=r40he454529_0
- r-mime=0.10=r40hcfec24a_0
- r-mnormt=2.0.2=r40h859d828_0
- r-modelr=0.1.8=r40h6115d3f_0
- r-munsell=0.5.0=r40h6115d3f_1003
- r-nlme=3.1_152=r40h859d828_0
- r-nnet=7.3_15=r40hcfec24a_0
- r-openssl=1.4.3=r40he5c4762_0
- r-optparse=1.6.6=r40h6115d3f_1
- r-pillar=1.5.1=r40hc72bb7e_0
- r-pkgbuild=1.2.0=r40hc72bb7e_0
- r-pkgconfig=2.0.3=r40h6115d3f_1
- r-pkgload=1.2.0=r40h03ef668_0
- r-plotly=4.9.3=r40hc72bb7e_0
- r-plyr=1.8.6=r40h0357c0b_1
- r-png=0.1_7=r40hcdcec82_1004
- r-praise=1.0.0=r40h6115d3f_1004
- r-prettyunits=1.1.1=r40h6115d3f_1
- r-processx=3.4.5=r40hcfec24a_0
- r-progress=1.2.2=r40h6115d3f_2
- r-promises=1.2.0.1=r40h03ef668_0
- r-ps=1.6.0=r40hcfec24a_0
- r-psych=2.2.5=r40hc72bb7e_0
- r-purrr=0.3.4=r40hcdcec82_1
- r-r6=2.5.0=r40hc72bb7e_0
- r-rcolorbrewer=1.1_2=r40h6115d3f_1003
- r-rcpp=1.0.6=r40h03ef668_0
- r-rcurl=1.98_1.3=r40hcfec24a_0
- r-readr=1.4.0=r40h1b71b39_0
- r-readxl=1.3.1=r40hde08347_4
- r-recommended=4.0=r40_1004
- r-rematch=1.0.1=r40h6115d3f_1003
- r-rematch2=2.1.2=r40h6115d3f_1
- r-reprex=1.0.0=r40hc72bb7e_0
- r-reshape2=1.4.4=r40h0357c0b_1
- r-rlang=0.4.10=r40hcfec24a_0
- r-rmarkdown=2.7=r40hc72bb7e_0
- r-rpart=4.1_15=r40hcfec24a_2
- r-rprojroot=2.0.2=r40hc72bb7e_0
- r-rstudioapi=0.13=r40hc72bb7e_0
- r-rvest=1.0.0=r40hc72bb7e_0
- r-scales=1.1.1=r40h6115d3f_0
- r-selectr=0.4_2=r40h6115d3f_1
- r-spatial=7.3_13=r40hcfec24a_0
- r-stringi=1.5.3=r40hcabe038_1
- r-stringr=1.4.0=r40h6115d3f_2
- r-survival=3.2_9=r40hcfec24a_0
- r-sys=3.4=r40hcdcec82_0
- r-testthat=3.0.2=r40h03ef668_0
- r-tibble=3.1.0=r40hcfec24a_1
- r-tidyr=1.1.3=r40h03ef668_0
- r-tidyselect=1.1.0=r40h6115d3f_0
- r-tidyverse=1.3.0=r40h6115d3f_2
- r-tinytex=0.30=r40hc72bb7e_0
- r-tmvnsim=1.0_2=r40h859d828_3
- r-utf8=1.2.1=r40hcfec24a_0
- r-vctrs=0.3.6=r40hcfec24a_0
- r-viridis=0.5.1=r40h6115d3f_1004
- r-viridislite=0.3.0=r40h6115d3f_1003
- r-waldo=0.2.5=r40hc72bb7e_0
- r-withr=2.4.1=r40hc72bb7e_0
- r-xfun=0.20=r40hcfec24a_0
- r-xml=3.99_0.6=r40hcfec24a_0
- r-xml2=1.3.2=r40h0357c0b_1
- r-yaml=2.2.1=r40hcfec24a_1
- r-zeallot=0.1.0=r40h6115d3f_1002
- readline=8.0=he28a2e2_2
- retrying=1.3.3=py_2
- scipy=1.5.3=py39hee8e79c_0
- seaborn=0.12.2=py39h06a4308_0
- sed=4.8=he412f7d_0
- setuptools=49.6.0=py39hf3d152e_3
- six=1.15.0=pyh9f0ad1d_0
- sqlite=3.34.0=h74cdb3f_0
- sysroot_linux-64=2.12=h77966d4_13
- tk=8.6.10=h21135ba_1
- tktable=2.10=hb7b940f_3
- tornado=6.1=py39h3811e60_1
- tzdata=2021a=he74cb21_0
- wheel=0.36.2=pyhd3deb0d_0
- xorg-kbproto=1.0.7=h7f98852_1002
- xorg-libice=1.0.10=h7f98852_0
- xorg-libsm=1.2.3=hd9c2040_1000
- xorg-libx11=1.7.0=h7f98852_0
- xorg-libxau=1.0.9=h7f98852_0
- xorg-libxdmcp=1.1.3=h7f98852_0
- xorg-libxext=1.3.4=h7f98852_1
- xorg-libxrender=0.9.10=h7f98852_1003
- xorg-libxt=1.2.1=h7f98852_2
- xorg-renderproto=0.11.1=h7f98852_1002
- xorg-xextproto=7.3.0=h7f98852_1002
- xorg-xproto=7.0.31=h7f98852_1007
- xz=5.2.5=h516909a_1
- zlib=1.2.11=h516909a_1010
- zstd=1.4.9=ha95c52a_0
- pip:
- countrycode==0.2
- distance==0.1.3
- pyfaidx==0.6.2
prefix: /net/viral_genomics/corona/katrina/miniconda/envs/sarscoverage