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environment.yml
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environment.yml
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name: corona_sd_plots
channels:
- conda-forge
- bioconda
- defaults
dependencies:
- _libgcc_mutex=0.1=main
- _r-mutex=1.0.0=anacondar_1
- binutils_impl_linux-64=2.33.1=he6710b0_7
- binutils_linux-64=2.33.1=h9595d00_15
- biopython=1.74=py27h7b6447c_0
- blas=1.0=mkl
- blast=2.9.0=h20b68b9_1
# - blast-legacy=2.2.26=2
- boost=1.68.0=py27h8619c78_1001
- boost-cpp=1.68.0=h11c811c_1000
- bwidget=1.9.11=1
- bzip2=1.0.8=h7b6447c_0
- ca-certificates=2020.12.5=ha878542_0
- cairo=1.16.0=hf32fb01_1
- certifi=2019.11.28=py27h8c360ce_1
- curl=7.69.1=hbc83047_0
- dbus=1.13.6=he372182_0
- ete2=2.3.10=py27_0
- expat=2.2.10=he6710b0_2
- fasttree=2.1.10=h516909a_4
- fontconfig=2.13.1=h6c09931_0
- freetype=2.10.4=h5ab3b9f_0
- fribidi=1.0.10=h7b6447c_0
- gcc_impl_linux-64=7.3.0=habb00fd_1
- gcc_linux-64=7.3.0=h553295d_15
- gfortran_impl_linux-64=7.3.0=hdf63c60_1
- gfortran_linux-64=7.3.0=h553295d_15
- glib=2.67.4=h36276a3_1
- gmp=6.2.1=h58526e2_0
- gnutls=3.6.13=h79a8f9a_0
- graphite2=1.3.14=h23475e2_0
- gsl=2.4=h14c3975_4
- gst-plugins-base=1.14.0=h8213a91_2
- gstreamer=1.14.0=h28cd5cc_2
- gxx_impl_linux-64=7.3.0=hdf63c60_1
- gxx_linux-64=7.3.0=h553295d_15
- harfbuzz=2.8.0=h6f93f22_0
- hmmer=3.3.2=he1b5a44_0
- icu=58.2=he6710b0_3
- intel-openmp=2020.2=254
- java-jdk=8.0.112=1
- jpeg=9b=h024ee3a_2
- krb5=1.17.1=h173b8e3_0
- ld_impl_linux-64=2.33.1=h53a641e_7
- libcurl=7.69.1=h20c2e04_0
- libedit=3.1.20210216=h27cfd23_1
- libffi=3.3=he6710b0_2
- libgcc-ng=9.1.0=hdf63c60_0
- libgfortran-ng=7.3.0=hdf63c60_0
- libpng=1.6.37=hbc83047_0
- libssh2=1.9.0=h1ba5d50_1
- libstdcxx-ng=9.1.0=hdf63c60_0
- libtiff=4.2.0=h3942068_0
- libuuid=1.0.3=h1bed415_2
- libwebp-base=1.2.0=h27cfd23_0
- libxcb=1.14=h7b6447c_0
- libxml2=2.9.10=hb55368b_3
- libxslt=1.1.34=hc22bd24_0
- lxml=3.8.0=py27_0
- lz4-c=1.9.3=h2531618_0
- mafft=7.475=h516909a_0
- make=4.2.1=h1bed415_1
- mkl=2020.2=256
- mkl-service=2.3.0=py27he904b0f_0
- mkl_fft=1.0.15=py27ha843d7b_0
- mkl_random=1.1.0=py27hd6b4f25_0
- muscle=3.8.1551=hc9558a2_5
- mysql-connector-c=6.1.11=h6eb9d5d_1007
- mysql-python=1.2.5=py27h7b6447c_0
- ncurses=6.2=he6710b0_1
- nettle=3.4.1=h1bed415_1002
- numpy=1.16.6=py27hbc911f0_0
- numpy-base=1.16.6=py27hde5b4d6_0
- openjdk=8.0.112=zulu8.19.0.1_3
- openssl=1.1.1h=h516909a_0
- pango=1.45.3=hd140c19_0
- pcre=8.44=he6710b0_0
- perl=5.26.2=h36c2ea0_1008
- perl-archive-tar=2.32=pl526_0
- perl-carp=1.38=pl526_3
- perl-common-sense=3.74=pl526_2
- perl-compress-raw-bzip2 #=2.087=pl526he1b5a44_0
- perl-compress-raw-zlib #=2.087=pl526hc9558a2_0
- perl-exporter=5.72=pl526_1
- perl-exporter-tiny=1.002001=pl526_0
- perl-extutils-makemaker #=7.36=pl526_1
- perl-io-compress #=2.087=pl526he1b5a44_0
- perl-io-zlib #=1.10=pl526_2
- perl-json #=4.02=pl526_0
- perl-json-xs #=2.34=pl526h6bb024c_3
- perl-list-moreutils=0.428=pl526_1
- perl-list-moreutils-xs=0.428=pl526_0
- perl-pathtools=3.75=pl526h14c3975_1
- perl-scalar-list-utils=1.52=pl526h516909a_0
- perl-types-serialiser=1.0=pl526_2
- perl-xsloader=0.24=pl526_0
- pip=19.3.1=py27_0
- pixman=0.40.0=h7b6447c_0
- pyqt=5.9.2=py27hcca6a23_4
- python=2.7.18=h15b4118_1
- python_abi=2.7=1_cp27mu
- qt=5.9.7=h5867ecd_1
- r=3.6.0=r36_0
- r-assertthat=0.2.1=r36h6115d3f_2
- r-base=3.6.1=haffb61f_2
- r-boot=1.3_20=r36h6115d3f_0
- r-class=7.3_15=r36h96ca727_0
- r-cli=2.3.1=r36hc72bb7e_0
- r-cluster=2.0.8=r36ha65eedd_0
- r-codetools=0.2_16=r36h6115d3f_0
- r-colorspace=2.0_0=r36h9e2df91_0
- r-crayon=1.4.1=r36hc72bb7e_0
- r-digest=0.6.27=r36h1b71b39_0
- r-fansi=0.4.0=r36h96ca727_0
- r-foreign=0.8_71=r36h96ca727_0
- r-ggplot2=3.3.3=r36hc72bb7e_0
- r-glue=1.4.2=r36hcdcec82_0
- r-gtable=0.3.0=r36h6115d3f_3
- r-isoband=0.2.0=r36h29659fb_0
- r-kernsmooth=2.23_15=r36ha65eedd_4
- r-labeling=0.4.2=r36h142f84f_0
- r-lattice=0.20_38=r36h96ca727_0
- r-magrittr=2.0.1=r36h9e2df91_1
- r-mass=7.3_51.3=r36h96ca727_0
- r-matrix=1.2_17=r36h96ca727_0
- r-mgcv=1.8_28=r36h96ca727_0
- r-munsell=0.5.0=r36h6115d3f_1003
- r-nlme=3.1_139=r36ha65eedd_0
- r-nnet=7.3_12=r36h96ca727_0
- r-pillar=1.3.1=r36h6115d3f_0
- r-pkgconfig=2.0.3=r36h6115d3f_1
- r-praise=1.0.0=r36h6115d3f_1004
- r-r6=2.5.0=r36hc72bb7e_0
- r-rcolorbrewer=1.1_2=r36h6115d3f_1003
- r-rcpp=1.0.1=r36h29659fb_0
- r-recommended=3.6.0=r36_0
- r-rlang=0.3.4=r36h96ca727_0
- r-rpart=4.1_15=r36h96ca727_0
- r-scales=1.0.0=r36h0357c0b_1002
- r-spatial=7.3_11=r36h96ca727_4
- r-survival=2.44_1.1=r36h96ca727_0
- r-testthat=2.1.1=r36h29659fb_0
- r-tibble=2.1.1=r36h96ca727_0
- r-utf8=1.1.4=r36h96ca727_0
- r-viridislite=0.3.0=r36h6115d3f_1003
- r-withr=2.4.1=r36hc72bb7e_0
- r-ape
- r-jsonlite
- readline=8.1=h27cfd23_0
- setuptools=44.0.0=py27_0
- sip=4.19.8=py27hf484d3e_0
- six=1.15.0=pyhd3eb1b0_0
- sqlite=3.35.2=hdfb4753_0
- tk=8.6.10=hbc83047_0
- tktable=2.10=h14c3975_0
- trimal=1.4.1=hc9558a2_4
- wheel=0.36.2=pyhd3eb1b0_0
- xz=5.2.5=h7b6447c_0
- zlib=1.2.11=h7b6447c_3
- zstd=1.4.5=h9ceee32_0
- cd-hit
- pip:
- distance==0.1.3