diff --git a/workflow/rules/phylogeny.smk b/workflow/rules/phylogeny.smk index 63b8cc7..6831aff 100644 --- a/workflow/rules/phylogeny.smk +++ b/workflow/rules/phylogeny.smk @@ -75,7 +75,6 @@ rule join_one_more_cell: temp("results/raxml_ng_input/{individual}/ml_gt_and_likelihoods/{previous_cells}.{sc}_{ref_alt}.tsv"), log: "logs/raxml_ng_input/{individual}/ml_gt_and_likelihoods/{previous_cells}.{sc}_{ref_alt}.tsv.log", - group: "ref_alt_per_individual" conda: "../envs/xsv_miller.yaml" resources: @@ -105,7 +104,6 @@ rule parse_to_raxml_ng_gt_and_likelihoods: "results/raxml_ng_input/{individual}/ml_gt_and_likelihoods.{ref_alt}.catg", log: "logs/raxml_ng_input/{individual}/ml_gt_and_likelihoods.{ref_alt}.catg.log", - group: "ref_alt_per_individual" conda: "../envs/miller.yaml" params: