2.6.2

July 2020

• Fix regression -- restore gaps between tracks

2.6.1

June 2020

• Make the "showAllChromosomes" option true by default. This option controls the chromosome pulldown. if false only the largest chromosomes will be shown. The intent is to filter out the thousands of small scaffolds and contigs sometimes present in fasta files.

2.5.5

May 2020

Bug Fixes

• Restore support for "thenables" for oAuth tokens. Previous release supported Promise only

New Features

• Update CRAVAT links to OpenCRAVAT

2.5.4

April 2020

• Regression bug fix -- support function that returns a promise for an oauth token. Fixes issue #1099

2.5.3

April 2020

New Features

• Support gff3 features split across multiple records (same ID)

• Support custom "feature reader". See issue #1086

2.5.2

April 2020

New Features

• Allow "url" field to be a function or promise that returns a url string

Bug Fixes

• Disappearing snps in coverage track

2.5.0

April 2020

New Features

• GWAS tracks
• Whole-genome view for bedpe (arc) tracks
• Support tabix indexed "seg" files

Bug Fixes

• Bigbed tracks would not display in "expanded" mode. Issue #1077

2.4.1

March 2020

Bug Fix

• VCF parsing could fail due to incomplete lines at the end of a tabix block

2.4.0

March 2020

New Features

• New track type for splice junctions. See https://github.com/igvteam/igv.js/wiki/Splice-Junctions. Thanks to @bw2
• New color option for "no call" genotypes. See https://github.com/igvteam/igv.js/wiki/Variant-Track.

Bug Fixes

• Fix wig track rendering issue #1017 -- coverage gaps appear / disappear with zoom
• Improve handling of oAuth errors - more user feedback
• Fix popup text issue with collapsed VCF tracks #1060
• Correctly parse non-variant alleles (alt allele = ./.)
• Fix hardcoding of htsget endpoints #1061
• Always parse bam header for htsget read requests. Fixes #1062

2.3.5

November 2019

New Features

• "Whole genome view" is now optional. Use wholeGenomeView: false to disable it.
• File extension .regionPeak added as a synonym for .narrowPeak

Bug Fixes

• Bug fix - AED features with start position "0" were not parsed
• Bug fix - "sort by tag" initialization not working