post_processing.php

<?php
// This file is part of the Huygens Remote Manager
// Copyright and license notice: see license.txt

use hrm\Nav;
use hrm\param\ChromaticAberration;
use hrm\Util;

require_once dirname(__FILE__) . '/inc/bootstrap.php';

/* *****************************************************************************
 *
 * START SESSION, CHECK LOGIN STATE, INITIALIZE WHAT NEEDED
 *
 **************************************************************************** */

session_start();

if (!isset($_SESSION['user']) || !$_SESSION['user']->isLoggedIn()) {
    header("Location: " . "login.php");
    exit();
}
$message = "";

/* *****************************************************************************
 *
 * MANAGE THE CHROMATIC ABERRATION
 *
 **************************************************************************** */

/** @var ChromaticAberration $parameter */
$chanCnt = $_SESSION['task_setting']->numberOfChannels();
$chromaticArray = array();
for ($ch=0; $ch<$chanCnt; $ch++) {
    $chromaticParam[$ch] = 
        $_SESSION['task_setting']->parameter("ChromaticAberrationCh" . $ch);
}
$maxComponentCnt = $chromaticParam[0]->maxComponentCnt();
$shownComponentCnt = $chromaticParam[0]->shownComponentCnt();


/* *****************************************************************************
 *
 * PROCESS THE POSTED PARAMETERS
 *
 **************************************************************************** */
$postErrors = 0;
if ($_SESSION['user']->isAdmin() || $_SESSION['task_setting']->isEligibleForCAC()) {
    if (!$_SESSION['task_setting']->checkPostedChromaticAberrationParameters($_POST)) {
        $postErrors++;
    }
}
if ($_SESSION['user']->isAdmin() || $_SESSION['task_setting']->isEligibleForTStabilization($_SESSION['setting'])) {
    if (!$_SESSION['task_setting']->checkPostedTStabilizationParameters($_POST)) {
        $postErrors++;
    }
}
if (!$_SESSION['task_setting']->checkPostedHotPixelCorrectionParameters($_POST)) {
    $postErrors++;
}

if ($postErrors == 0) {
    $saved = $_SESSION['task_setting']->save();
    if ($saved) {
        header("Location: " . "select_hpc.php");
        exit();
    } else {
        $message = $_SESSION['task_setting']->message();
    }
} else {
    $message = $_SESSION['task_setting']->message();
}


/* *****************************************************************************
 *
 * CREATE THE PAGE
 *
 **************************************************************************** */

// Javascript includes
$script = array("settings.js", "quickhelp/help.js",
    "quickhelp/postProcessingHelp.js");

include("header.inc.php");
?>

<!--
  Tooltips
-->
<span class="toolTip" id="ttSpanCancel">
        Abort editing and go back to the Restoration parameters
        selection page. All changes will be lost!
    </span>
<span class="toolTip" id="ttSpanSave">
        Save and return to the processing parameters selection page.
    </span>
<span class="toolTip" id="ttSpanBack">
        Go back to previous page.
    </span>

<div id="nav">
    <div id="navleft">
        <ul>
            <?php
            echo(Nav::linkWikiPage('HuygensRemoteManagerHelpRestorationParameters'));
            ?>
            <li> [ <?php echo $_SESSION['task_setting']->name(); ?> ]</li>
        </ul>
    </div>
    <div id="navright">
        <ul>
            <?php
            echo(Nav::textUser($_SESSION['user']->name()));
            ?>
        </ul>
    </div>
    <div class="clear"></div>
</div>


<div id="content">
    <h3>Restoration - Post Deconvolution</h3>

    <form method="post" action="" id="select">
<?php
if ($_SESSION['user']->isAdmin() || $_SESSION['task_setting']->isEligibleForCAC()) {
?>
    <div id="ChromaticAberration">
        <fieldset class="setting provided"
                  onmouseover="changeQuickHelp( 'chromatic' );">

            <legend>
                <a href="javascript:openWindow(
                       'http://www.svi.nl/ChromaticAberrationCorrector')">
                    <img src="images/help.png" alt="?"/>
                </a>
                Chromatic Aberration Correction
            </legend>

           <p>
             Multi-channel images often display chromatic aberrations.
             Correcting for this is crucial for image visualization and
             analysis.
           </p>

            Reference channel:

            <select name="ReferenceChannel"
                    id="ReferenceChannel"
                    title="Reference channel"
                    class="selection"
                    onclick="changeChromaticChannelReference(this)"
                    onchange="changeChromaticChannelReference(this)">
                <?php
                for ($chan = 0; $chan < $chanCnt; $chan++) {
                    ?>
                    <option value=<?php echo $chan; ?>>
                        <?php echo $chan; ?>
                    </option>
                    <?php
                }
                ?>
            </select>

                <table id="ChromaticAberrationTable">
                    <tr>
                        <td class="header">Ch</td>
                        <td class="header">Shift x<br/>(&#956m)</td>
                        <td class="header">Shift y<br/>(&#956m)</td>
                        <td class="header">Shift z<br/>(&#956m)</td>
                        <td class="header">Rotation<br/>(degrees)</td>
                        <td class="header" id="ChromaticAberrationScaleTitle"><?php
                        if ($chromaticParam[1]->value()[13] == null) {
                            echo 'Scale<br/>(ratio)';
                        } else {
                            echo 'Scale<br/>(dB)';
                        }?></td>
                    </tr>

                    <?php
                    for ($chan = 0; $chan < $chanCnt; $chan++) {
                        ?>
                        <tr>
                            <td class="header"><?php echo $chan; ?></td>

                            <?php

                            for ($component = 0; $component < $shownComponentCnt; $component++) {
                                ?>
                                <td><input
                                        id="ChromaticAberrationCh<?php echo $chan . '_' . $component; ?>"
                                        name="ChromaticAberrationCh<?php echo $chan . '_' . $component; ?>"
                                        title="Channel <?php echo $chan; ?>, component <?php echo $component; ?>"
                                        type="text"
                                        size="8"
                                        value="<?php echo $chromaticParam[$chan]->value()[$component]; ?>"
                                        class="multichannelinput"/></td>
                                <?php
                            }
                        
                            ?>
                             <td><input type="button"
                                     id="ChromaticAberrationDiscardOtherCh<?php echo $chan?>"
                                     name="ChromaticAberrationDiscardOtherCh<?php echo $chan?>"
                                     title="Discard this channel's other components to edit the remaining"
                                     value="Discard other"
                                     <?php if ($chromaticParam[$chan]->componentCnt() == 5) { echo 'hidden=true'; }?>
                                     onclick="editChromaticChannelWith14Params(<?php echo $chan?>)"/></td>
                        </tr>
                        <?php
                    }
                    ?>

                </table>
                <p class="info">The correction is optional: leave empty for
                    skipping.</p>

    </div> <!-- ChromaticAberrationCorrector -->
<?php
}
?>

        <?php

        /*
              TIME STABILIZATION
        */

if ($_SESSION['user']->isAdmin() || $_SESSION['task_setting']->isEligibleForTStabilization($_SESSION['setting'])) {
        ?>

    <div id="TimeStabilization">

        <fieldset class="setting provided"
                  onmouseover="changeQuickHelp( 'tstabilization' );">

            <legend>
                <a href="javascript:openWindow(
                       'http://www.svi.nl/ObjectStabilizer')">
                    <img src="images/help.png" alt="?"/>
                </a>
                Stabilization Of Time Series
            </legend>

            <p>
              Correct for cell motion, thermal drift, shaking, and other
              types of movement such as x-y-z translations and rotations.
            </p>

            Stabilization of Time Series:

            <select name="TStabilization"
                    id="TStabilization"
                    title="Stabilization of Time Series"
                    class="selection"
                    onchange="switchTStabilizationMode(this)">
           <?php
            $parameterTStabilization = $_SESSION['task_setting']->parameter("TStabilization");
            $possibleValues = $parameterTStabilization->possibleValues();
            $selectedValue = $parameterTStabilization->value();

            // The javascript expects option values to match their indexes:
             sort($possibleValues);

             foreach ($possibleValues as $possibleValue) {
                 $translation = $parameterTStabilization->translatedValueFor($possibleValue);
                 if ($possibleValue == "0" && $selectedValue == "") {
                     $option = "selected=\"selected\"";
                 } else if ($possibleValue == $selectedValue) {
                     $option = "selected=\"selected\"";
                 } else {
                     $option = "";
                 }
           ?>
                 <option <?php echo $option ?>
                     value="<?php echo $possibleValue ?>">
                    <?php echo $translation ?>
                 </option>
           <?php
             }
           ?>
            </select>

        <?php

        /*
              TIME STABILIZATION: METHOD
        */
           $visibility = " style=\"display: none\"";
           if ($parameterTStabilization->value() == 1)
              $visibility = " style=\"display: block\"";

        ?>

         <div id="TStabilizationMethodDiv" <?php echo $visibility ?>>

           Stabilization Method:

            <select name="TStabilizationMethod"
                    id="TStabilizationMethod"
                    title="Stabilization Method"
                    class="selection">
        <?php
            $parameterTStabilizationMethod =
                $_SESSION['task_setting']->parameter("TStabilizationMethod");
            $possibleValues = $parameterTStabilizationMethod->possibleValues();
            $selectedValue = $parameterTStabilizationMethod->value();

            // The javascript expects option values to match their indexes:
             sort($possibleValues);

             foreach ($possibleValues as $possibleValue) {
                 $translation =
                     $parameterTStabilizationMethod->translatedValueFor($possibleValue);
                 if ($possibleValue == "0" && $selectedValue == "") {
                     $option = "selected=\"selected\"";
                 } else if ($possibleValue == $selectedValue) {
                     $option = "selected=\"selected\"";
                 } else {
                     $option = "";
                 }
        ?>
                 <option <?php echo $option ?>
                     value="<?php echo $possibleValue ?>">
                    <?php echo $translation ?>
                 </option>

        <?php
             }
        ?>
            </select>

         </div> <!-- TStabilizationMethodDiv -->


        <?php

        /*
              TIME STABILIZATION: ROTATION
        */

        ?>

         <div id="TStabilizationRotationDiv" <?php echo $visibility ?>>

           Detect Rotations:

            <select name="TStabilizationRotation"
                    id="TStabilizationRotation"
                    title="Stabilization Rotation"
                    class="selection">
         <?php
            $parameterTStabilizationRotation =
                $_SESSION['task_setting']->parameter("TStabilizationRotation");
            $possibleValues = $parameterTStabilizationRotation->possibleValues();
            $selectedValue = $parameterTStabilizationRotation->value();

            // The javascript expects option values to match their indexes:
             sort($possibleValues);

             foreach ($possibleValues as $possibleValue) {
                 $translation = $parameterTStabilizationRotation->translatedValueFor($possibleValue);
                 if ($possibleValue == "0" && $selectedValue == "") {
                     $option = "selected=\"selected\"";
                 } else if ($possibleValue == $selectedValue) {
                     $option = "selected=\"selected\"";
                 } else {
                     $option = "";
                 }
         ?>
                 <option <?php echo $option ?>
                     value="<?php echo $possibleValue ?>">
                    <?php echo $translation ?>
                 </option>
         <?php
             }
         ?>
            </select>

         </div> <!-- TStabilizationRotationDiv -->


        <?php

        /*
              TIME STABILIZATION: CROPPING
        */

        ?>

         <div id="TStabilizationCroppingDiv" <?php echo $visibility ?>>

          Cropping Scheme:

            <select name="TStabilizationCropping"
                    id="TStabilizationCropping"
                    title="Stabilization Cropping"
                    class="selection">

         <?php
            $parameterTStabilizationCropping =
                $_SESSION['task_setting']->parameter("TStabilizationCropping");
            $possibleValues = $parameterTStabilizationCropping->possibleValues();
            $selectedValue = $parameterTStabilizationCropping->value();

            // The javascript expects option values to match their indexes:
             sort($possibleValues);

             foreach ($possibleValues as $possibleValue) {
                 $translation = $parameterTStabilizationCropping->translatedValueFor($possibleValue);
                 if ($possibleValue == "0" && $selectedValue == "") {
                     $option = "selected=\"selected\"";
                 } else if ($possibleValue == $selectedValue) {
                     $option = "selected=\"selected\"";
                 } else {
                     $option = "";
                 }
         ?>
                 <option <?php echo $option ?>
                     value="<?php echo $possibleValue ?>">
                    <?php echo $translation ?>
                 </option>
         <?php
             }
         ?>
            </select>

          </div> <!-- TStabilizationCroppingDiv -->

    </div> <!-- TimeStabilization -->

<?php
}
?>

    <div><input name="OK" type="hidden"/></div>

    <div id="controls"
         onmouseover="changeQuickHelp( 'default' )">
        <input type="button" value="" class="icon previous"
               onmouseover="TagToTip('ttSpanBack' )"
               onmouseout="UnTip()"
               onclick="document.location.href='task_parameter.php'"/>
        <input type="button" value="" class="icon up"
               onmouseover="TagToTip('ttSpanCancel' )"
               onmouseout="UnTip()"
               onclick="deleteValuesAndRedirect(
                    'select_task_settings.php' );"/>
        <input type="submit" value="" class="icon next"
               onmouseover="TagToTip('ttSpanForward' )"
               onmouseout="UnTip()"
               onclick="process()"/>
    </div>

    </form>
</div> <!-- content -->

<div id="rightpanel" onmouseover="changeQuickHelp( 'default' )">
    <div id="info">
        <h3>Quick help</h3>
        <div id="contextHelp">
            <p>On this page you specify the parameters of those
               restoration operations to be carried out on the deconvolved
               image.</p>
        </div>
    </div>

    <div id="message">
        <?php

        echo "<p>$message</p>";

        ?>
    </div>

</div> <!-- rightpanel -->


<?php
    if ($chanCnt > 1) {
?>
<script type="text/javascript">
    initChromaticChannelReference();
</script>

<?php
    }

include("footer.inc.php");

// Workaround for IE
if (Util::using_IE() && !isset($_SERVER['HTTP_REFERER'])) {
    ?>
    <script type="text/javascript">
        $(document).ready(retrieveValues());
    </script>
    <?php
}
?>