forked from Vizgen/vizgen-postprocessing
-
Notifications
You must be signed in to change notification settings - Fork 0
/
pyproject.toml
109 lines (101 loc) · 3.05 KB
/
pyproject.toml
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
[tool.poetry]
name = "vpt"
version = "1.2.2"
description = "Command line tool for highly parallelized processing of Vizgen data"
license = "Apache-2.0"
authors = ["Vizgen <[email protected]>"]
maintainers = ["Timothy Wiggin <[email protected]>"]
readme = "README.md"
# homepage = ""
repository = "https://github.com/Vizgen/vizgen-postprocessing"
documentation = "https://vizgen.github.io/vizgen-postprocessing/"
# keywords = ""
classifiers = [
"Development Status :: 5 - Production/Stable",
"Natural Language :: English",
"Operating System :: POSIX :: Linux",
"Operating System :: MacOS :: MacOS X",
"Operating System :: Microsoft :: Windows",
"License :: OSI Approved :: Apache Software License",
"Topic :: Scientific/Engineering :: Image Processing",
"Topic :: Scientific/Engineering :: Bio-Informatics",
"Programming Language :: Python :: 3.9",
"Programming Language :: Python :: 3.10",
]
packages = [{ include = "vpt", from = "src" }]
include = ["src/vpt/utils/seg_json_generator/templates/*"]
[tool.poetry.scripts]
vpt = "vpt.vizgen_postprocess:entry_point"
[tool.poetry.dependencies]
python = ">=3.9,<3.11"
boto3 = "1.17"
dask = ">=2023.2.0"
distributed = ">=2023.2.0"
fsspec = "2021.10.0"
geopandas = ">=0.13.2"
gcsfs = "2021.10.0"
h5py = ">=3.7.0"
ipykernel = "*"
kaleido = [
{ version = "0.1post1", platform = "win32" },
{ version = "0.1.0", platform = "linux" },
{ version = "0.1.0", platform = "darwin" },
]
leidenalg = "^0.10.1"
numpy = ">=1.24.3"
pandas = ">=2.0.3"
plotly = "^5.17.0"
pretty-html-table = "^0.9.16"
pyarrow = ">=8.0.0 <14.0.0"
python-dotenv = ">=0.20.0"
pyvips = ">=2.2.1"
rasterio = ">=1.3.0, <1.3.6"
s3fs = "2021.10.0"
scanpy = "1.9.3"
scipy = ">=1.8.1"
shapely = ">=2.0.0"
torch = "2.0.0"
vpt_core = ">=1.1.0"
vpt_plugin_cellpose = { version = ">=1.0.0", optional = true }
vpt_plugin_watershed = { version = ">=1.0.0", optional = true }
[tool.poetry.extras]
cellpose = ["vpt_plugin_cellpose"]
watershed = ["vpt_plugin_watershed"]
all = ["vpt_plugin_cellpose", "vpt_plugin_watershed"]
[tool.poetry.group.dev.dependencies]
pytest = "^7.2.0"
pytest-cov = "^4.0.0"
flake8 = "^6.0.0"
mypy = "^1.0.0"
opencv-python-headless = "4.6.0.66"
[tool.poetry.group.deploy.dependencies]
python-semantic-release = "^7.32.2"
sphinx = "^4.5.0"
sphinxcontrib-applehelp = "1.0.4"
sphinxcontrib-devhelp = "1.0.2"
sphinxcontrib-htmlhelp = "2.0.1"
sphinxcontrib-jquery = "4.1"
sphinxcontrib-jsmath = "1.0.1"
sphinxcontrib-qthelp = "1.0.3"
sphinxcontrib-serializinghtml = "1.1.5"
sphinx-argparse = "^0.4.0"
sphinx-view = "^0.3.1"
myst-nb = { version = "^0.17.1", python = "^3.9" }
sphinx-autoapi = "^2.0.0"
sphinx-rtd-theme = "^1.1.1"
[[tool.poetry.source]]
name = "PyPI"
priority = "primary"
[build-system]
requires = ["poetry-core"]
build-backend = "poetry.core.masonry.api"
[tool.semantic_release]
version_toml = "pyproject.toml:tool.poetry.version"
branch = "develop"
changelog_file = "CHANGELOG.md"
build_command = "poetry build"
dist_path = "dist/"
upload_to_release = true
upload_to_pypi = false
remove_dist = false
patch_without_tag = true