Fix test script

inab · Feb 26, 2024 · b335b7d · b335b7d
1 parent 2a759f5
commit b335b7d
Showing 1 changed file with 3 additions and 2 deletions.
diff --git a/scripts/compare_trimmed_msas.sh b/scripts/compare_trimmed_msas.sh
@@ -1,10 +1,11 @@
-methods=(gappyout strict strictplus automated1 nogaps noallgaps)
+methods="gappyout strict strictplus automated1 nogaps noallgaps"
 for method in $methods
 do
     for msa in test_msas/$method/*.fasta
     do
         msa_filename=$(basename $msa)
-        diff $msa dataset/trimmed_msas/$method/$msa_filename -q || exit 1
+        diff "$msa" "dataset/trimmed_msas/$method/$msa_filename" -q || exit 1
+        echo "Compared $msa and dataset/trimmed_msas/$method/$msa_filename"
     done
 done
 rm -rf test_msas