DESCRIPTION

Type: Package
Package: teal.modules.hermes
Title: RNA-Seq Analysis Modules to Add to a Teal Application
Version: 0.1.6.9030
Date: 2025-01-28
Authors@R: c(
    person("Dony", "Unardi", , "unardid@gene.com", role = "cre"),
    person("Daniel", "Sabanés Bové", role = "aut"),
    person("Nikolas", "Burkoff", role = "aut"),
    person("Dinakar", "Kulkarni", role = "aut"),
    person("Konrad", "Pagacz", role = "aut"),
    person("Namrata", "Bhatia", role = "aut"),
    person("Dawid", "Kaledkowski", role = "aut"),
    person("Pawel", "Rucki", role = "aut"),
    person("Jeff", "Luong", role = "aut"),
    person("Stefanie", "Bienert", role = "aut"),
    person("Haocheng", "Li", role = "aut"),
    person("Lyndsee Midori", "Zhang", role = "aut"),
    person("Sorin", "Voicu", role = "ctb"),
    person("Benoit", "Falquet", role = "ctb"),
    person("Mahmoud", "Hallal", role = "ctb"),
    person("Tim", "Treis", role = "ctb"),
    person("Vedha", "Viyash", role = "ctb"),
    person("F. Hoffmann-La Roche AG", role = c("cph", "fnd"))
  )
Description: RNA-seq analysis teal modules based on the `hermes` package.
License: Apache License 2.0 | file LICENSE
URL: https://insightsengineering.github.io/teal.modules.hermes/,
    https://github.com/insightsengineering/teal.modules.hermes/
BugReports: 
    https://github.com/insightsengineering/teal.modules.hermes/issues
Depends:
    ggplot2,
    R (>= 4.1),
    shiny,
    teal (>= 0.15.2.9103)
Imports:
    checkmate,
    DT (>= 0.33),
    edgeR,
    forcats,
    hermes (>= 1.7.1),
    lifecycle,
    MultiAssayExperiment (>= 1.32.0),
    rtables (>= 0.6.11),
    S4Vectors,
    shinyRadioMatrix (>= 0.2.1),
    shinyWidgets,
    stats,
    stringr,
    SummarizedExperiment (>= 1.36.0),
    teal.data (>= 0.6.0.9025),
    teal.logger (>= 0.3.0.9004),
    teal.reporter (>= 0.3.1.9023),
    teal.widgets (>= 0.4.2.9025),
    tern (>= 0.9.7),
    utils
Suggests:
    BiocStyle,
    covr (>= 3.6.4),
    dplyr,
    globals,
    knitr,
    logger (>= 0.2.2),
    matrixStats,
    R6,
    rmarkdown,
    rvest,
    shinytest2 (>= 0.3.2),
    testthat (>= 3.1.5)
VignetteBuilder:
    knitr
RdMacros:
    lifecycle
biocViews:
Config/Needs/verdepcheck: tidyverse/ggplot2, rstudio/shiny,
    insightsengineering/teal, insightsengineering/teal.slice,
    insightsengineering/teal.code, insightsengineering/teal.transform,
    mllg/checkmate, bioc::edgeR, rstudio/DT, tidyverse/forcats,
    insightsengineering/hermes, r-lib/lifecycle,
    bioc::MultiAssayExperiment, insightsengineering/rtables,
    bioc::S4Vectors, antonmalko/shinyRadioMatrix, dreamRs/shinyWidgets,
    tidyverse/stringr, bioc::SummarizedExperiment,
    insightsengineering/teal.data, insightsengineering/teal.logger,
    insightsengineering/teal.reporter, insightsengineering/teal.widgets,
    insightsengineering/tern, bioc::BiocStyle, r-lib/covr,
    tidyverse/dplyr, futureverse/globals, yihui/knitr, daroczig/logger,
    HenrikBengtsson/matrixStats, r-lib/R6, rstudio/rmarkdown,
    tidyverse/rvest, rstudio/shinytest2, r-lib/testthat
Config/Needs/website: insightsengineering/nesttemplate
Config/testthat/edition: 3
Encoding: UTF-8
Language: en-US
LazyData: true
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.2