diff --git a/.github/workflows/build-and-release.yml b/.github/workflows/build-and-release.yml index f30de0e..df58f31 100644 --- a/.github/workflows/build-and-release.yml +++ b/.github/workflows/build-and-release.yml @@ -1,75 +1,45 @@ -name: Build and release +name: Pull request master (lint and test) on: - push: - branches: [master] - pull_request: - branches: [master] + push: + branches: [master] + pull_request: + branches: [master] -env: - REGISTRY: registry.cern.ch - IMAGE: cern-sis/inspirehep/refextract jobs: - test_and_publish: - runs-on: ubuntu-20.04 - steps: - - name: Checkout - uses: actions/checkout@v4 - with: - fetch-depth: 0 - - - name: Install dependencies - run: sudo apt-get update && sudo apt-get install poppler-utils - - - name: Set up Python 3.11 - uses: actions/setup-python@v4 - with: - python-version: 3.11 - - - name: Install python dependencies - run: | - python -m pip install --upgrade pip - pip install setuptools wheel - pip install -e .[docs,tests] - - - name: Show python dependencies - run: | - pip freeze - - - name: Run tests - run: | - ./run-tests.sh - - - name: Build package - if: ${{ success() && github.event_name == 'push' }} - run: | - python setup.py sdist bdist_wheel - - push_to_registry_and_deploy: - runs-on: ubuntu-20.04 - needs: [test_and_publish] - if: github.event_name == 'push' && github.ref == 'refs/heads/master' - steps: - - name: Checkout - uses: actions/checkout@v4 - with: - fetch-depth: 0 - - name: Pre-commit check - uses: pre-commit/action@v3.0.1 - - name: Build Image - id: build - uses: cern-sis/gh-workflows/.github/actions/docker-build@v6 - with: - registry: ${{ env.REGISTRY }} - image: ${{ env.IMAGE }} - cache: false - username: ${{ secrets.HARBOR_USERNAME }} - password: ${{ secrets.HARBOR_PASSWORD }} - - - name: Deploy QA - uses: cern-sis/gh-workflows/.github/actions/kubernetes-project-new-images@v6 - with: - event-type: update - images: ${{ env.REGISTRY }}/${{ env.IMAGE }}@${{ steps.build.outputs.image-digest }} - token: ${{ secrets.PAT_FIRE_EVENTS_ON_CERN_SIS_KUBERNETES }} + lint_and_test: + runs-on: ubuntu-latest + steps: + - name: Checkout Code + uses: actions/checkout@v4 + with: + ref: ${{ github.ref }} + - name: Lint - Pre-commit check + uses: pre-commit/action@v3.0.1 + - name: Prep Build + uses: docker/setup-buildx-action@v3 + - name: Build Docker image + run: docker build -t refextract . + - name: Run tests + run: docker run refextract /bin/bash -c "pip install refextract[tests] && pytest ." + push_and_deploy: + runs-on: ubuntu-latest + needs: [lint_and_test] + if: github.event_name == 'push' && github.ref == 'refs/heads/master' + steps: + - name: Build Image + id: build + uses: cern-sis/gh-workflows/.github/actions/docker-build@v6 + with: + registry: ${{ env.REGISTRY }} + image: ${{ env.IMAGE }} + cache: false + username: ${{ secrets.HARBOR_USERNAME }} + password: ${{ secrets.HARBOR_PASSWORD }} + - name: Deploy QA + uses: cern-sis/gh-workflows/.github/actions/kubernetes-project-new-images@v6 + with: + event-type: update + images: ${{ env.REGISTRY }}/${{ env.IMAGE }}@${{ steps.build.outputs.image-digest }} + token: ${{ secrets.PAT_FIRE_EVENTS_ON_CERN_SIS_KUBERNETES }} diff --git a/Dockerfile b/Dockerfile index 06423ab..3ea34ef 100644 --- a/Dockerfile +++ b/Dockerfile @@ -1,7 +1,17 @@ -FROM python:3.11-slim-buster -RUN apt update && apt install poppler-utils -y -COPY setup.py setup.cfg README.rst ./ -COPY refextract refextract/ -RUN python setup.py install +FROM python:3.11.6-slim-bullseye AS python + +ARG APP_HOME=/refextract +WORKDIR ${APP_HOME} + +RUN apt update && apt install poppler-utils libmagic1 -y +COPY poetry.lock pyproject.toml setup.cfg README.rst ${APP_HOME} + +RUN pip install --no-cache-dir poetry +RUN poetry config virtualenvs.create false \ + && poetry install --only main + +COPY . ${APP_HOME} + + ENV PROMETHEUS_MULTIPROC_DIR='/tmp' ENTRYPOINT exec gunicorn -b :5000 --access-logfile - 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"sha256:02c9eb92b7d6c06f31a782811505d2157837cea66aaede3e217c7c27c039476c"}, + {file = "werkzeug-3.0.4.tar.gz", hash = "sha256:34f2371506b250df4d4f84bfe7b0921e4762525762bbd936614909fe25cd7306"}, +] + +[package.dependencies] +MarkupSafe = ">=2.1.1" + +[package.extras] +watchdog = ["watchdog (>=2.3)"] + +[metadata] +lock-version = "2.0" +python-versions = ">=3.11,<4" +content-hash = "3169404d333f6f07c1906d3325c6d6ab3fa8bb499aa417526d022a2009c47856" diff --git a/pyproject.toml b/pyproject.toml new file mode 100644 index 0000000..9b0e5f9 --- /dev/null +++ b/pyproject.toml @@ -0,0 +1,53 @@ +[tool.poetry] +name = "refextract" +version = "0.1.0" +description = "Small library for extracting references used in scholarly communication." +readme = "README.rst" +homepage = "https://github.com/inspirehep/refextract" +license = "GPL-2.0-or-later" +authors = [ + "CERN " +] +classifiers = [ + "Development Status :: 4 - Beta", + "Environment :: Console", + "Intended Audience :: Developers", + "Intended Audience :: Science/Research", + "License :: OSI Approved :: GNU General Public License v2 (GPLv2)", + "Operating System :: OS Independent", + "Programming Language :: Python", + "Programming Language :: Python :: 3", + "Programming Language :: Python :: 3.6", + "Programming Language :: Python :: 3.7", + "Programming Language :: Python :: 3.8", + "Topic :: Scientific/Engineering :: Information Analysis", + "Topic :: Software Development :: Libraries", + "Topic :: Software Development :: Libraries :: Python Modules", + "Topic :: Utilities", +] + + +[tool.poetry.dependencies] +python = ">=3.11,<4" +PyPDF2 = ">=1.26.0,~=1.0" +six = ">=1.10.0,~=1.0" +unidecode = ">=1.0.22,~=1.0" +Flask = ">=2.0.3" +webargs = "<=5.4.0" +prometheus-flask-exporter = ">=0.20.1,~=0.20" +gunicorn = "^23.0.0" +python-magic = "^0.4.27" +inspire-utils = "^3.0.61" +requests = "^2.32.3" +urllib3 = "1.26.12" + + +[tool.poetry.group.dev.dependencies] +mock = "^5.1.0" +responses ="^0.10.15" +pytest = "^8.3.3" +pytest-cov = "^5.0.0" + +[build-system] +requires = ["poetry-core>=1.0.0"] +build-backend = "poetry.core.masonry.api" diff --git a/setup.cfg b/setup.cfg index b78ccc6..40c05d8 100644 --- a/setup.cfg +++ b/setup.cfg @@ -30,6 +30,3 @@ include = refextract/*.py [tool:pytest] addopts = --cov=refextract --cov-report=term-missing:skip-covered - -[flake8] -ignore = *.py E501 FI12 FI14 FI15 FI16 FI17 FI18 FI50 FI51 FI53 W504 W605 FI10 FI11 FI13 diff --git a/setup.py b/setup.py deleted file mode 100644 index 017104e..0000000 --- a/setup.py +++ /dev/null @@ -1,97 +0,0 @@ -# -*- coding: utf-8 -*- -# -# This file is part of refextract -# Copyright (C) 2013, 2015, 2016, 2017, 2018, 2020 CERN. -# -# refextract is free software; you can redistribute it and/or -# modify it under the terms of the GNU General Public License as -# published by the Free Software Foundation; either version 2 of the -# License, or (at your option) any later version. -# -# refextract is distributed in the hope that it will be useful, but -# WITHOUT ANY WARRANTY; without even the implied warranty of -# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU -# General Public License for more details. -# -# You should have received a copy of the GNU General Public License -# along with refextract; if not, write to the Free Software Foundation, Inc., -# 59 Temple Place, Suite 330, Boston, MA 02111-1307, USA. -# -# In applying this license, CERN does not waive the privileges and immunities -# granted to it by virtue of its status as an Intergovernmental Organization -# or submit itself to any jurisdiction. - -"""Small library for extracting references used in scholarly communication.""" - -from setuptools import find_packages, setup - -url = 'https://github.com/inspirehep/refextract' - -with open('README.rst') as file: - readme = file.read() - -install_requires = [ - 'PyPDF2~=1.0,>=1.26.0', - 'python-magic~=0.0,>=0.4.15', - 'requests~=2.0,>=2.18.4', - 'six~=1.0,>=1.10.0', - 'unidecode~=1.0,>=1.0.22', - 'inspire-utils~=3.0,>=3.0.25', - 'Flask>=2.0.3', - "webargs<=5.4.0", - "gunicorn>=20.1.0", - "prometheus-flask-exporter~=0.20,>=0.20.1" -] - -tests_require = [ - 'flake8-future-import~=0.0,>=0.4.4', - 'flake8~=3.0,>=3.5.0', - 'pytest-cov~=5.0', - 'pytest~=8.0.0', - 'responses~=0.0,>=0.8.1', - 'mock~=5.1.0' -] - -extras_require = { - 'tests': tests_require, -} - -extras_require['all'] = [] -for _name, reqs in extras_require.items(): - extras_require['all'].extend(reqs) - -packages = find_packages() - -setup( - name='refextract', - url=url, - license='GPLv2', - author='CERN', - author_email='admin@inspirehep.net', - packages=packages, - include_package_data=True, - zip_safe=False, - platforms='any', - description=__doc__, - long_description=readme, - install_requires=install_requires, - tests_require=tests_require, - extras_require=extras_require, - classifiers=[ - 'Development Status :: 4 - Beta', - 'Environment :: Console', - 'Intended Audience :: Developers', - 'Intended Audience :: Science/Research', - 'License :: OSI Approved :: GNU General Public License v2 (GPLv2)', - 'Operating System :: OS Independent', - 'Programming Language :: Python', - 'Programming Language :: Python :: 3', - 'Programming Language :: Python :: 3.6', - 'Programming Language :: Python :: 3.7', - 'Programming Language :: Python :: 3.8', - 'Topic :: Scientific/Engineering :: Information Analysis', - 'Topic :: Software Development :: Libraries', - 'Topic :: Software Development :: Libraries :: Python Modules', - 'Topic :: Utilities', - ], -)