CHANGELOG.md

[0.5.5]

Modified

• removed instances of np.NaN to replace with np.nan for numpy 2.0 compatibility
• set python 3.10 as minimum python version

[0.5.4]

Modified

• iblatlas.plots.plot_swanson_vector option to show colorbar

[0.5.3]

Modified

• iblatlas.plots uses matplotlib.colormaps.get_cmap instead of deprecated cm.get_cmap

[0.5.2]

Modified

• iblatlas.plots uses colors.get_cmap instead of deprecated colors.get_cmap

[0.5.1]

Modified

• iblatlas.genomics.merfish.load does not return an error when dask is installed but dask.dataframe is not.

[0.5.0]

Added

• iblatlas.genomics.merfish module for working with the Allen gene expression atlas in the iblatlas.genomics.merfish module

[0.4.0]

Added

• iblatlas.genomics.agea module for working with the Allen gene expression atlas in the iblatlas.genomics.agea module

Modified

• slices of the atlas are now always returned with consistent sizes regardless of the volume layout on disk
• atlases now can have an extra dimension in the image volume, to allow for multiple layers

[0.3.0]

Modified

• Insertion._get_surface_intersection: can return None if and when mode is not set to raise and insertion is not intersecting with any surface
• BrainAtlas.mask(): method that computes a mask of the convex brain volume shape

[0.2.1]

Modified

• HOTFIX: Pass reg id into polygon functions in plot_scalar_on_slice

[0.2.0]

Modified

• Changed packaging from setup.py to pyproject.toml

[0.1.1]

Modified

• Change examples and docstrings to reference iblatlas instead of ibllib

[0.1.0]

Added

• Atlas files that were located in the ibllib github repository. These include all files in the ibllib.atlas module, in examples.atlas and ibllib.tests.test_atlas.py