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Encoding final code#77

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berkgercek wants to merge 60 commits intodevelopint-brain-lab/paper-brain-wide-map:developfrom encoding-revisionsint-brain-lab/paper-brain-wide-map:encoding-revisionsCopy head branch name to clipboard

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Commits

Commits on May 8, 2023

• Updates to plotting funcs

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Commits on Jun 5, 2023

• subpanel plot script for only units used in paper

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Commits on Jun 16, 2023

• Compatibility for plots with pandas 2.0

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• Refactor subpanel_plots

  berkgercek

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Commits on Jun 22, 2023

• Changes to allow for direct plotting of fig panels

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• Update utils.py

  mschart

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• add Berk's panels

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• Rename bwm_figures.py to bwm_fig.py

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Commits on Jun 23, 2023

• Include Berk's panels

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• Update and rename bwm_fig.py to bwm_figs.py

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Commits on Jun 26, 2023

• works now for block, choice, stim, fback

  mschart

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Commits on Jun 27, 2023

• Update bwm_figs.py

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Commits on Jul 3, 2023

• add some axis labels and table column names

  mschart

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Commits on Jul 6, 2023

• add result pooling function

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• harmonize file paths

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Commits on Sep 22, 2023

• save fit weights

  berkgercek

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Commits on Oct 3, 2023

• Update README.md

  berkgercek

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• save kernels after fitting

  berkgercek

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• saving kernels and analyze using manifold methods

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Commits on Dec 19, 2023

• Merge meta scripts into main

  

  juhuntenburg

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  berkgercek

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• Update bwm_figures.py

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  mschart

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• add effect sizes to table

  

  mschart

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• truncate values

  

  mschart

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• mean and median for weight and age

  

  GaelleChapuis

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  berkgercek

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• remove pinned pandas version to match ibllib

  

  oliche

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  berkgercek

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• qc adjustable in load_good_units

  

  juhuntenburg

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• small fix about qc value

  

  juhuntenburg

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  berkgercek

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• add canonical info

  

  mschart

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  berkgercek

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• Include wheel speed and velocity results

  

  mschart

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  berkgercek

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• fix Cosmos column

  

  mschart

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  berkgercek

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• fix Beryl Cosmos map for table

  

  mschart

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  berkgercek

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• add column for Cosmos names

  

  mschart

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• swap columns

  

  mschart

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  berkgercek

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• Add files via upload

  

  mschart

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  berkgercek

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• add prior paper columns

  

  mschart

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  berkgercek

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• again, less rounded

  

  mschart

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  berkgercek

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• correct typo

  

  mschart

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  berkgercek

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• Update region_info.csv

  

  mschart

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  berkgercek

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• column name change

  

  mschart

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• Atlas imports

  

  k1o0

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• groom the repository

  

  oliche

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  berkgercek

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• fix links ?

  

  oliche

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  berkgercek

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• add a link to the Imbizo course

  

  oliche

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• fix ONE link

  

  juhuntenburg

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  berkgercek

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• new release

  

  juhuntenburg

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Commits on Jan 6, 2024

• Merge remote-tracking branch 'origin/main' into encoding-revisions

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Commits on Jan 29, 2024

• Edits to fix fns

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Commits on Jun 23, 2024

• Simpler dockerfile

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• Merge branch 'main' into encoding-revisions

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Commits on Jul 1, 2024

• Merge branch 'develop' into encoding-revisions

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Commits on Jul 15, 2024

• Minor docker file changes

  berkgercek

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• Merge branch 'encoding-revisions' of https://github.com/int-brain-lab/paper-brain-wide-map into encoding-revisions

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Commits on Sep 9, 2024

• changes to load scripts

  berkgercek

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• Add option for early RT splits

  berkgercek

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• fixed bug in saving unit cluster IDs

  berkgercek

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Commits on Sep 13, 2024

• allow for early RT fitting

  berkgercek

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Commits on Sep 16, 2024

• Docker updates and early RT fitting

  berkgercek

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• bugfix

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• dockerfile fix

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• Update docker spec and remove pytorch deps

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