Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

No default Improper Dihedral Types in amber14sb_OL15.ff #2

Open
k-swayze opened this issue Aug 4, 2020 · 3 comments
Open

No default Improper Dihedral Types in amber14sb_OL15.ff #2

k-swayze opened this issue Aug 4, 2020 · 3 comments

Comments

@k-swayze
Copy link

k-swayze commented Aug 4, 2020

I am trying to use grommp to write a tpr file but keep encountering the following error when trying to use amber14sb_OL15.ff:

ERROR 9 [file topol_Protein_chain_C.itp, line 142001]:
No default Improper Dih. types

Has anyone every encountered/solved this issue?

@molsim
Copy link
Member

molsim commented Aug 24, 2020

Hi, I'd start debugging by looking exactly at the line 142001 to see what impropers it could not find.

@satary
Copy link
Collaborator

satary commented Aug 24, 2020

It is highly likely that the error is in histidine. Not all protonation forms work correctly for some reason.

@Gab0
Copy link

Gab0 commented Apr 9, 2021

Hey, I've had a similar issue, except not with that exact line number.
The fix described solved it for me:

http://zhenglz.blogspot.com/2017/05/fixing-bugs-in-ff14sb-port-for-gromacs.html

This applies to at least amber14sb and amber14sb_parmbsc1_cufix.

I wonder if the repo owner (or anyone that would create the pull request) is in a position to apply the fix in the source file,
or should be redistribute the force fields as they are and lead the users to the patch instructions?

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

4 participants