From 0eae4955dbb9fb4a15e8b4dbc6e6978beeec7bdf Mon Sep 17 00:00:00 2001 From: l-singh-biomsu Date: Thu, 17 Oct 2024 15:10:24 +0000 Subject: [PATCH] Updated classification.json --- CURATED_SET/classification.json | 500 +++++++++++++++++++++++++++++++- 1 file changed, 486 insertions(+), 14 deletions(-) diff --git a/CURATED_SET/classification.json b/CURATED_SET/classification.json index 05eb72a..a2d1fee 100644 --- a/CURATED_SET/classification.json +++ b/CURATED_SET/classification.json @@ -4,17 +4,37 @@ "H1": { "cH1": "null", "generic_H1": "null", - "H1.0": "null", - "H1.1": "null", - "H1.10": "null", - "H1.2": "null", - "H1.3": "null", - "H1.4": "null", - "H1.5": "null", - "OO_H1.8": "null", + "H1.0": { + "H1.0_(Homo_sapiens)": "null" + }, + "H1.1": { + "H1.1_(Homo_sapiens)": "null" + }, + "H1.10": { + "H1.10_(Homo_sapiens)": "null" + }, + "H1.2": { + "H1.2_(Homo_sapiens)": "null" + }, + "H1.3": { + "H1.3_(Homo_sapiens)": "null" + }, + "H1.4": { + "H1.4_(Homo_sapiens)": "null" + }, + "H1.5": { + "H1.5_(Homo_sapiens)": "null" + }, + "OO_H1.8": { + "H1.8_(Homo_sapiens)": "null" + }, "scH1": "null", - "TS_H1.6": "null", - "TS_H1.7": "null", + "TS_H1.6": { + "H1.6_(Homo_sapiens)": "null" + }, + "TS_H1.7": { + "H1.7_(Homo_sapiens)": "null" + }, "TS_H1.9": "null" }, "H2A": { @@ -189,6 +209,12 @@ }, "H3": { "cenH3_(Eukarya)": { + "cenH3_(Animals)": { + "cenH3_(Mammalia)": { + "cenH3_(Homo_sapiens)": "null" + } + }, + "cenH3_(Fungi)": "null", "cenH3_(Plants)": "null" }, "cH3": { @@ -228,7 +254,10 @@ "H3.X_(Homo_sapiens)": "null" }, "H3.Y_(Primates?)": { - "H3.Y_(Homo_sapiens)": "null" + "H3.Y_(Homo_sapiens)": { + "H3.Y.1_(Homo_sapiens)": "null", + "H3.Y.2_(Homo_sapiens)": "null" + } } }, "H3.3-like_(Plants)": { @@ -236,8 +265,12 @@ "TS H3.10": "null" } }, - "H3.4_(Mammalia)": "null", - "H3.5_(Primates_or_Hominids?)": "null", + "H3.4_(Mammalia)": { + "H3.4_(Homo_sapiens)": "null" + }, + "H3.5_(Primates_or_Hominids?)": { + "H3.5_(Homo_sapiens)": "null" + }, "H3.6_(Mammals?)?": "null", "H3.7_(Mammals?)?": "null", "H3.8_(Mammals?)?": "null", @@ -246,7 +279,9 @@ "H3.V_(Trypanosomes?)": "null" }, "H4": { - "cH4": "null" + "cH4": { + "cH4_(Homo_sapiens)": "null" + } }, "Viral": "null" }, @@ -274,6 +309,29 @@ "alternate_names": [], "publications": [] }, + "cenH3_(Animals)": { + "level": "variant", + "description": { + "summary": "null", + "taxonomy": "null", + "genes": "null", + "evolution": "null", + "expression": "null", + "knock-out": "null", + "function": "null", + "sequence": "null", + "localization": "null", + "deposition": "null", + "structure": "null", + "interactions": "null", + "disease": "null", + "caveats": "null" + }, + "taxonomic_span": "Homo sapiens", + "taxonomic_span_id": "9606", + "alternate_names": [], + "publications": [] + }, "cenH3_(Eukarya)": { "level": "variant_group", "description": { @@ -297,6 +355,75 @@ "alternate_names": [], "publications": [] }, + "cenH3_(Fungi)": { + "level": "variant", + "description": { + "summary": "null", + "taxonomy": "null", + "genes": "null", + "evolution": "null", + "expression": "null", + "knock-out": "null", + "function": "null", + "sequence": "null", + "localization": "null", + "deposition": "null", + "structure": "null", + "interactions": "null", + "disease": "null", + "caveats": "null" + }, + "taxonomic_span": "Homo sapiens", + "taxonomic_span_id": "9606", + "alternate_names": [], + "publications": [] + }, + "cenH3_(Homo_sapiens)": { + "level": "variant", + "description": { + "summary": "null", + "taxonomy": "null", + "genes": "null", + "evolution": "null", + "expression": "null", + "knock-out": "null", + "function": "null", + "sequence": "null", + "localization": "null", + "deposition": "null", + "structure": "null", + "interactions": "null", + "disease": "null", + "caveats": "null" + }, + "taxonomic_span": "Homo sapiens", + "taxonomic_span_id": "9606", + "alternate_names": [], + "publications": [] + }, + "cenH3_(Mammalia)": { + "level": "variant", + "description": { + "summary": "null", + "taxonomy": "null", + "genes": "null", + "evolution": "null", + "expression": "null", + "knock-out": "null", + "function": "null", + "sequence": "null", + "localization": "null", + "deposition": "null", + "structure": "null", + "interactions": "null", + "disease": "null", + "caveats": "null" + }, + "taxonomic_span": "Homo sapiens", + "taxonomic_span_id": "9606", + "alternate_names": [], + "publications": [] + }, "cenH3_(Plants)": { "level": "variant", "description": { @@ -2035,6 +2162,29 @@ "22650316" ] }, + "cH4_(Homo_sapiens)": { + "level": "variant", + "description": { + "summary": "null", + "taxonomy": "null", + "genes": "null", + "evolution": "null", + "expression": "null", + "knock-out": "null", + "function": "null", + "sequence": "null", + "localization": "null", + "deposition": "null", + "structure": "null", + "interactions": "null", + "disease": "null", + "caveats": "null" + }, + "taxonomic_span": "Homo sapiens", + "taxonomic_span_id": "9606", + "alternate_names": [], + "publications": [] + }, "CS_H2B_(Echinoidea)": { "level": "variant_group", "description": { @@ -2243,6 +2393,29 @@ "7066298" ] }, + "H1.0_(Homo_sapiens)": { + "level": "variant", + "description": { + "summary": "null", + "taxonomy": "null", + "genes": "null", + "evolution": "null", + "expression": "null", + "knock-out": "null", + "function": "null", + "sequence": "null", + "localization": "null", + "deposition": "null", + "structure": "null", + "interactions": "null", + "disease": "null", + "caveats": "null" + }, + "taxonomic_span": "Homo sapiens", + "taxonomic_span_id": "9606", + "alternate_names": [], + "publications": [] + }, "H1.1": { "level": "variant_group", "description": { @@ -2297,6 +2470,52 @@ "22650316" ] }, + "H1.10_(Homo_sapiens)": { + "level": "variant", + "description": { + "summary": "null", + "taxonomy": "null", + "genes": "null", + "evolution": "null", + "expression": "null", + "knock-out": "null", + "function": "null", + "sequence": "null", + "localization": "null", + "deposition": "null", + "structure": "null", + "interactions": "null", + "disease": "null", + "caveats": "null" + }, + "taxonomic_span": "Homo sapiens", + "taxonomic_span_id": "9606", + "alternate_names": [], + "publications": [] + }, + "H1.1_(Homo_sapiens)": { + "level": "variant", + "description": { + "summary": "null", + "taxonomy": "null", + "genes": "null", + "evolution": "null", + "expression": "null", + "knock-out": "null", + "function": "null", + "sequence": "null", + "localization": "null", + "deposition": "null", + "structure": "null", + "interactions": "null", + "disease": "null", + "caveats": "null" + }, + "taxonomic_span": "Homo sapiens", + "taxonomic_span_id": "9606", + "alternate_names": [], + "publications": [] + }, "H1.2": { "level": "variant_group", "description": { @@ -2322,6 +2541,29 @@ "26689747" ] }, + "H1.2_(Homo_sapiens)": { + "level": "variant", + "description": { + "summary": "null", + "taxonomy": "null", + "genes": "null", + "evolution": "null", + "expression": "null", + "knock-out": "null", + "function": "null", + "sequence": "null", + "localization": "null", + "deposition": "null", + "structure": "null", + "interactions": "null", + "disease": "null", + "caveats": "null" + }, + "taxonomic_span": "Homo sapiens", + "taxonomic_span_id": "9606", + "alternate_names": [], + "publications": [] + }, "H1.3": { "level": "variant_group", "description": { @@ -2347,6 +2589,29 @@ "26689747" ] }, + "H1.3_(Homo_sapiens)": { + "level": "variant", + "description": { + "summary": "null", + "taxonomy": "null", + "genes": "null", + "evolution": "null", + "expression": "null", + "knock-out": "null", + "function": "null", + "sequence": "null", + "localization": "null", + "deposition": "null", + "structure": "null", + "interactions": "null", + "disease": "null", + "caveats": "null" + }, + "taxonomic_span": "Homo sapiens", + "taxonomic_span_id": "9606", + "alternate_names": [], + "publications": [] + }, "H1.4": { "level": "variant_group", "description": { @@ -2372,6 +2637,29 @@ "26689747" ] }, + "H1.4_(Homo_sapiens)": { + "level": "variant", + "description": { + "summary": "null", + "taxonomy": "null", + "genes": "null", + "evolution": "null", + "expression": "null", + "knock-out": "null", + "function": "null", + "sequence": "null", + "localization": "null", + "deposition": "null", + "structure": "null", + "interactions": "null", + "disease": "null", + "caveats": "null" + }, + "taxonomic_span": "Homo sapiens", + "taxonomic_span_id": "9606", + "alternate_names": [], + "publications": [] + }, "H1.5": { "level": "variant_group", "description": { @@ -2397,6 +2685,98 @@ "26689747" ] }, + "H1.5_(Homo_sapiens)": { + "level": "variant", + "description": { + "summary": "null", + "taxonomy": "null", + "genes": "null", + "evolution": "null", + "expression": "null", + "knock-out": "null", + "function": "null", + "sequence": "null", + "localization": "null", + "deposition": "null", + "structure": "null", + "interactions": "null", + "disease": "null", + "caveats": "null" + }, + "taxonomic_span": "Homo sapiens", + "taxonomic_span_id": "9606", + "alternate_names": [], + "publications": [] + }, + "H1.6_(Homo_sapiens)": { + "level": "variant", + "description": { + "summary": "null", + "taxonomy": "null", + "genes": "null", + "evolution": "null", + "expression": "null", + "knock-out": "null", + "function": "null", + "sequence": "null", + "localization": "null", + "deposition": "null", + "structure": "null", + "interactions": "null", + "disease": "null", + "caveats": "null" + }, + "taxonomic_span": "Homo sapiens", + "taxonomic_span_id": "9606", + "alternate_names": [], + "publications": [] + }, + "H1.7_(Homo_sapiens)": { + "level": "variant", + "description": { + "summary": "null", + "taxonomy": "null", + "genes": "null", + "evolution": "null", + "expression": "null", + "knock-out": "null", + "function": "null", + "sequence": "null", + "localization": "null", + "deposition": "null", + "structure": "null", + "interactions": "null", + "disease": "null", + "caveats": "null" + }, + "taxonomic_span": "Homo sapiens", + "taxonomic_span_id": "9606", + "alternate_names": [], + "publications": [] + }, + "H1.8_(Homo_sapiens)": { + "level": "variant", + "description": { + "summary": "null", + "taxonomy": "null", + "genes": "null", + "evolution": "null", + "expression": "null", + "knock-out": "null", + "function": "null", + "sequence": "null", + "localization": "null", + "deposition": "null", + "structure": "null", + "interactions": "null", + "disease": "null", + "caveats": "null" + }, + "taxonomic_span": "Homo sapiens", + "taxonomic_span_id": "9606", + "alternate_names": [], + "publications": [] + }, "H2A": { "level": "type", "description": { @@ -4404,6 +4784,29 @@ "yu_constitutive_1997" ] }, + "H3.4_(Homo_sapiens)": { + "level": "variant", + "description": { + "summary": "null", + "taxonomy": "null", + "genes": "null", + "evolution": "null", + "expression": "null", + "knock-out": "null", + "function": "null", + "sequence": "null", + "localization": "null", + "deposition": "null", + "structure": "null", + "interactions": "null", + "disease": "null", + "caveats": "null" + }, + "taxonomic_span": "Homo sapiens", + "taxonomic_span_id": "9606", + "alternate_names": [], + "publications": [] + }, "H3.4_(Mammalia)": { "level": "variant_group", "description": { @@ -4443,6 +4846,29 @@ "ueda_testis-specific_2017" ] }, + "H3.5_(Homo_sapiens)": { + "level": "variant", + "description": { + "summary": "null", + "taxonomy": "null", + "genes": "null", + "evolution": "null", + "expression": "null", + "knock-out": "null", + "function": "null", + "sequence": "null", + "localization": "null", + "deposition": "null", + "structure": "null", + "interactions": "null", + "disease": "null", + "caveats": "null" + }, + "taxonomic_span": "Homo sapiens", + "taxonomic_span_id": "9606", + "alternate_names": [], + "publications": [] + }, "H3.5_(Primates_or_Hominids?)": { "level": "variant_group", "description": { @@ -4650,6 +5076,52 @@ "alternate_names": [], "publications": [] }, + "H3.Y.1_(Homo_sapiens)": { + "level": "variant", + "description": { + "summary": "null", + "taxonomy": "null", + "genes": "null", + "evolution": "null", + "expression": "null", + "knock-out": "null", + "function": "null", + "sequence": "null", + "localization": "null", + "deposition": "null", + "structure": "null", + "interactions": "null", + "disease": "null", + "caveats": "null" + }, + "taxonomic_span": "Homo sapiens", + "taxonomic_span_id": "9606", + "alternate_names": [], + "publications": [] + }, + "H3.Y.2_(Homo_sapiens)": { + "level": "variant", + "description": { + "summary": "null", + "taxonomy": "null", + "genes": "null", + "evolution": "null", + "expression": "null", + "knock-out": "null", + "function": "null", + "sequence": "null", + "localization": "null", + "deposition": "null", + "structure": "null", + "interactions": "null", + "disease": "null", + "caveats": "null" + }, + "taxonomic_span": "Homo sapiens", + "taxonomic_span_id": "9606", + "alternate_names": [], + "publications": [] + }, "H3.Y_(Homo_sapiens)": { "level": "variant", "description": {