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feat(IPVC-2425): add migration to fix tx-alt-exon-pairs view #34

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May 8, 2024
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feat(IPVC-2425): add migration to fix tx-alt-exon-pairs view #34

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feat(IPVC-2425): add migration to fix tx-alt-exon-pairs view
bsgiles73 May 7, 2024
4a41d75
feat(IPVC-2425): update view where criteria
bsgiles73 May 7, 2024
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feat(IPVC-2425): update view where criteria
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@bsgiles73
bsgiles73 committed May 7, 2024
commit 4a41d757334f336a5634535add5eda44c417947e
2 changes: 1 addition & 1 deletion src/alembic/versions/f885cb84efce_update_tx_alt_exon_pairs_v.py
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Expand Up @@ -30,7 +30,7 @@ def upgrade() -> None:
FROM exon_SET tes
JOIN transcript t ON tes.tx_ac=t.ac
JOIN gene g ON t.gene_id=g.gene_id
JOIN exon_set aes ON tes.tx_ac=aes.tx_ac AND tes.alt_aln_method='transcript' AND aes.alt_aln_method NOT LIKE 'transcript%'
JOIN exon_set aes ON tes.tx_ac=aes.tx_ac AND tes.alt_aln_method='transcript' AND aes.alt_aln_method !~ 'transcript'
JOIN exon tex ON tes.exon_SET_id=tex.exon_SET_id
JOIN exon aex ON aes.exon_SET_id=aex.exon_SET_id AND tex.ORD=aex.ORD
LEFT JOIN exon_aln ea ON ea.tx_exon_id=tex.exon_id AND ea.alt_exon_id=AEX.exon_id;
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