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TODO.md

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  • (DONE) Revive the summarize_results.

    • add the global summary table to the autpop if there a model is run more than once.
  • (DONE) rename the pU, pC and pD columns. Into what?

  • (DONE) split the family_type_key into mom_genotype and dad_genotype

  • (DONE) make the FamilyType constructor accept genotypes as strings

  • (DONE) Revive save_global_stats_table

    • add precision argument
  • (DONE) Add processing and timing messages to standard output

  • (DONE) Add the n_processes command line argument

  • (DONE) Add the all_families command line argument

  • (DONE) Add the following properties to teh family specific stats

    • parents_affected
    • mom_liability
    • dad_liability
    • mom_affected
    • dad_affected
  • (DONE) Check, if the paper results are reproduced for the precise computation!

  • (DONE) Add the following section to the global stats Prediction method description precice: True or False family set description number of family types number of family types with sampling

  • (DONE) If predictions of the first run are precise, don't run more

  • (DONE) Implement the family sampling mode