From 2a9c4667a97c385e4347a459d71ad913d186f0b7 Mon Sep 17 00:00:00 2001
From: Zamin Iqbal <iqbal-lab@users.noreply.github.com>
Date: Thu, 18 Jul 2024 08:48:39 +0100
Subject: [PATCH] Add citation.  Done on phone

---
 README.md | 8 ++++++++
 1 file changed, 8 insertions(+)

diff --git a/README.md b/README.md
index ccd123d..670ab73 100644
--- a/README.md
+++ b/README.md
@@ -7,3 +7,11 @@ Clockwork takes fastq input and outputs standard VCF files as output
 
 
 Please see the [clockwork wiki page](https://github.com/iqbal-lab-org/clockwork/wiki) for documentation.
+
+**Citation**
+If you use Clockwork please cite the following paper,  whete it was introduced and benchmarked 
+
+"Minos: variant adjudication and joint genotyping of cohorts of bacterial genomes"
+Hunt et al. Genome Biol
+. 2022 Jul 5;23(1):147.
+doi: 10.1186/s13059-022-02714-x.