negative feedback loop .psc model

iretes · Aug 23, 2024 · 68b65e0 · 68b65e0
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diff --git a/long_range_models/negative_feedback_loop.psc b/long_range_models/negative_feedback_loop.psc
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+# Negative feedback loop
+
+# G1 --> 10, G1 + P1
+# G2 --> 10000, G2 + P2
+# G3 --> 10, G3 + P3
+# P1 + G2, 2 <--> 10, P1G2
+# P2 + G3, 20 <--> 0.1, P2G3
+# P3 + G1, 20 <--> 10, P3G1
+# P1 --> 1,
+# P2 --> 100,
+# P3 --> 1,
+
+R1:
+    G1 > G1 + P1
+    G1*RP1
+
+R2:
+    G2 > G2 + P2
+    G2*RP2
+
+R3:
+    G3 > G3 + P3
+    G3*RP3
+
+R4:
+    P1 + G2 > P1G2
+    P1*G2*RB1
+
+R5:
+    P1G2 > P1 + G2
+    P1G2*RU1
+
+R6:
+    P2 + G3 > P2G3
+    P2*G3*RB2
+
+R7:
+    P2G3 > P2 + G3
+    P2G3*RU2
+
+R8:
+    P3 + G1 > P3G1
+    P3*G1*RB3
+
+R9:
+    P3G1 > P3 + G1
+    P3G1*RU3
+
+R10:
+    P1 > $pool
+    P1*RD1
+
+R11:
+    P2 > $pool
+    P2*RD2
+
+R12:
+    P3 > $pool
+    P3*RD3
+
+# Parameters
+RP1 = 10
+RP2 = 10000
+RP3 = 10
+RB1 = 10
+RU1 = 2
+RB2 = 0.1
+RU2 = 20
+RB3 = 10
+RU3 = 20
+RD1 = 1
+RD2 = 100
+RD3 = 1
+
+# Init Values
+P1 = 0
+P2 = 0
+P3 = 0
+G1 = 1
+G2 = 1
+G3 = 1
+P1G2 = 0
+P2G3 = 0
+P3G1 = 0
diff --git a/notebooks/long_range_simulations.html b/notebooks/long_range_simulations.html
diff --git a/notebooks/long_range_simulations.ipynb b/notebooks/long_range_simulations.ipynb
diff --git a/notebooks/negative_feedback_loop.ipynb b/notebooks/negative_feedback_loop.ipynb