From b07749a936c841ef7a67897b5417a83266af82e9 Mon Sep 17 00:00:00 2001 From: github-actions Date: Mon, 25 Nov 2024 12:16:16 +0000 Subject: [PATCH] CI run 545 pushed to gh-pages --- demo/stable/Gruntfile.js | 11 - demo/stable/eslint.config.mjs | 126 + demo/stable/node_modules/.yarn-integrity | 172 +- .../node_modules/dwv/decoders/pdfjs/readme.md | 27 +- .../dwv/decoders/rii-mango/readme.md | 21 +- demo/stable/node_modules/dwv/dist/dwv.d.ts | 3683 +- demo/stable/node_modules/dwv/dist/dwv.min.js | 2 +- .../node_modules/dwv/dist/dwv.min.js.map | 2 +- demo/stable/node_modules/dwv/package.json | 58 +- demo/stable/node_modules/dwv/readme.md | 25 +- .../CHANGELOG.md | 5 + .../README.md | 15 +- .../cjs/i18nextBrowserLanguageDetector.js | 371 +- .../esm/i18nextBrowserLanguageDetector.js | 366 +- .../dist/esm/package.json | 2 +- .../umd/i18nextBrowserLanguageDetector.js | 413 +- .../umd/i18nextBrowserLanguageDetector.min.js | 2 +- .../i18nextBrowserLanguageDetector.js | 413 +- 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demo/stable/node_modules/konva/cmj/shapes/Transformer.js delete mode 100644 demo/stable/node_modules/konva/cmj/shapes/Wedge.d.ts delete mode 100644 demo/stable/node_modules/konva/cmj/shapes/Wedge.js delete mode 100644 demo/stable/node_modules/konva/cmj/types.d.ts delete mode 100644 demo/stable/node_modules/konva/cmj/types.js create mode 100644 demo/stable/node_modules/konva/lib/BezierFunctions.d.ts create mode 100644 demo/stable/node_modules/konva/lib/BezierFunctions.js diff --git a/demo/stable/Gruntfile.js b/demo/stable/Gruntfile.js index 95e5bfc3..ebdb1ad4 100644 --- a/demo/stable/Gruntfile.js +++ b/demo/stable/Gruntfile.js @@ -2,14 +2,6 @@ module.exports = function (grunt) { // Project configuration grunt.initConfig({ pkg: grunt.file.readJSON('package.json'), - eslint: { - files: [ - 'Gruntfile.js', - 'service-worker.js', - 'src/**/*.js', - '!src/utils/modernizr.js' - ] - }, copy: { dev: { src: 'index.html', @@ -67,11 +59,8 @@ module.exports = function (grunt) { grunt.loadNpmTasks('grunt-contrib-copy'); grunt.loadNpmTasks('grunt-contrib-connect'); grunt.loadNpmTasks('grunt-contrib-watch'); - grunt.loadNpmTasks('grunt-eslint'); // Task to run tests - grunt.registerTask('lint', ['eslint']); - grunt.registerTask('test', ['eslint']); grunt.registerTask('start', ['connect:prod', 'watch']); grunt.registerTask('dev', ['copy:dev', 'connect:dev', 'watch']); }; diff --git a/demo/stable/eslint.config.mjs b/demo/stable/eslint.config.mjs new file mode 100644 index 00000000..69839b61 --- /dev/null +++ b/demo/stable/eslint.config.mjs @@ -0,0 +1,126 @@ +import globals from 'globals'; +import js from '@eslint/js'; +import stylisticJs from '@stylistic/eslint-plugin-js'; + +export default [ + js.configs.recommended, + { + languageOptions: { + globals: { + ...globals.browser, + ...globals.node, + ...globals.jquery, + dwv: 'readonly', + }, + }, + plugins: { + '@stylistic/js': stylisticJs + }, + rules: { + // require triple equal + // https://eslint.org/docs/rules/eqeqeq + eqeqeq: 'error', + // force using curly braces + // https://eslint.org/docs/rules/curly + curly: 'error', + // no var + // https://eslint.org/docs/rules/no-var + //'no-var': 'error', + // prefer const + // https://eslint.org/docs/rules/prefer-const + //'prefer-const': 'error', + // allow for some unused args + // https://eslint.org/docs/rules/no-unused-vars + 'no-unused-vars': ['error', {argsIgnorePattern: '^_'}], + + // formatting rules + + // force semi colon + // https://eslint.style/rules/js/semi + '@stylistic/js/semi': ['error'], + // force 2 space indent (default: 4) + // https://eslint.style/rules/js/indent + '@stylistic/js/indent': ['error', 2], + // force single quotes (default 'double') + // https://eslint.style/rules/js/quotes + '@stylistic/js/quotes': ['error', 'single'], + // no space for named functions (default 'always') + // https://eslint.style/rules/js/space-before-function-paren + '@stylistic/js/space-before-function-paren': ['error', {named: 'never'}], + // newline at object curly + // https://eslint.style/rules/js/object-curly-newline + '@stylistic/js/object-curly-newline': ['error', {consistent: true}], + // newline at object properties + // https://eslint.style/rules/js/object-property-newline + '@stylistic/js/object-property-newline': [ + 'error', {allowAllPropertiesOnSameLine: true} + ], + // newline at array brackets + // https://eslint.style/rules/js/array-bracket-newline + '@stylistic/js/array-bracket-newline': ['error', 'consistent'], + // newline at array elements (default: always) + // https://eslint.style/rules/js/array-element-newline + '@stylistic/js/array-element-newline': ['error', 'consistent'], + // force 'one true brace style' (1tbs) + // https://eslint.style/rules/js/brace-style + '@stylistic/js/brace-style': 'error', + // give error for long lines (default: 80) + // https://eslint.style/rules/js/max-len + '@stylistic/js/max-len': [ + 'error', {ignoreRegExpLiterals: true, ignoreUrls: true} + ], + // spaces in parenthesis (default: never) + // https://eslint.style/rules/js/space-in-parens + '@stylistic/js/space-in-parens': 'error', + // space before blocks + // https://eslint.style/rules/js/space-before-blocks + '@stylistic/js/space-before-blocks': 'error', + // spaces inside brackets (default: never) + // https://eslint.style/rules/js/array-bracket-spacing + '@stylistic/js/array-bracket-spacing': 'error', + // spaces in curly (default: never) + // https://eslint.style/rules/js/object-curly-spacing + '@stylistic/js/object-curly-spacing': 'error', + // no space in computed properties (default: never) + // https://eslint.style/rules/js/computed-property-spacing + '@stylistic/js/computed-property-spacing': 'error', + // spaces around comma (default: {"before": false, "after": true}) + // https://eslint.style/rules/js/comma-spacing + '@stylistic/js/comma-spacing': 'error', + // space around unary operator + // https://eslint.style/rules/js/space-unary-ops + '@stylistic/js/space-unary-ops': 'error', + // space around operator + // https://eslint.style/rules/js/space-infix-ops + '@stylistic/js/space-infix-ops': 'error', + // space around keywords (default: {'before': true, 'after': true}) + // https://eslint.style/rules/js/keyword-spacing + '@stylistic/js/keyword-spacing': 'error', + // no space before function call (default: never) + // https://eslint.style/rules/js/function-call-spacing + '@stylistic/js/func-call-spacing': 'error', + // spacing around colon + // (default: {'beforeColon': false, 'afterColon': true}) + // https://eslint.style/rules/js/key-spacing + '@stylistic/js/key-spacing': 'error', + // spacing around semi-colon + // https://eslint.style/rules/js/semi-spacing + '@stylistic/js/semi-spacing': 'error', + // no trailing spaces + // https://eslint.style/rules/js/no-trailing-spaces + '@stylistic/js/no-trailing-spaces': 'error', + // no multi spaces + // https://eslint.style/rules/js/no-multi-spaces + '@stylistic/js/no-multi-spaces': 'error', + // no space for named functions (default {'max': 2}) + // https://eslint.style/rules/js/no-multiple-empty-lines + '@stylistic/js/no-multiple-empty-lines': 'error', + // linebreak after operator + // https://eslint.style/rules/js/operator-linebreak + '@stylistic/js/operator-linebreak': 'error', + // quotes around object property names + // https://eslint.style/rules/js/quote-props + '@stylistic/js/quote-props': ['error', 'as-needed'] + }, + } +]; diff --git a/demo/stable/node_modules/.yarn-integrity b/demo/stable/node_modules/.yarn-integrity index 8ef477b2..df207a39 100644 --- a/demo/stable/node_modules/.yarn-integrity +++ b/demo/stable/node_modules/.yarn-integrity @@ -1,5 +1,5 @@ { - "systemParams": "linux-x64-108", + "systemParams": "linux-x64-115", "modulesFolders": [ "node_modules" ], @@ -8,63 +8,67 @@ ], "linkedModules": [], "topLevelPatterns": [ - "dwv@0.32.4", + "@eslint/js@^9.4.0", + "@stylistic/eslint-plugin-js@^2.1.0", + 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"https://registry.yarnpkg.com/immediate/-/immediate-3.0.6.tgz#9db1dbd0faf8de6fbe0f5dd5e56bb606280de69b", @@ -180,11 +180,8 @@ "imurmurhash@^0.1.4": "https://registry.yarnpkg.com/imurmurhash/-/imurmurhash-0.1.4.tgz#9218b9b2b928a238b13dc4fb6b6d576f231453ea", "inflight@^1.0.4": "https://registry.yarnpkg.com/inflight/-/inflight-1.0.6.tgz#49bd6331d7d02d0c09bc910a1075ba8165b56df9", "inherits@2": "https://registry.yarnpkg.com/inherits/-/inherits-2.0.4.tgz#0fa2c64f932917c3433a0ded55363aae37416b7c", - "inherits@2.0.1": "https://registry.yarnpkg.com/inherits/-/inherits-2.0.1.tgz#b17d08d326b4423e568eff719f91b0b1cbdf69f1", "inherits@2.0.3": "https://registry.yarnpkg.com/inherits/-/inherits-2.0.3.tgz#633c2c83e3da42a502f52466022480f4208261de", "inherits@2.0.4": "https://registry.yarnpkg.com/inherits/-/inherits-2.0.4.tgz#0fa2c64f932917c3433a0ded55363aae37416b7c", - "inherits@^2.0.1": "https://registry.yarnpkg.com/inherits/-/inherits-2.0.4.tgz#0fa2c64f932917c3433a0ded55363aae37416b7c", - "inherits@~2.0.1": "https://registry.yarnpkg.com/inherits/-/inherits-2.0.4.tgz#0fa2c64f932917c3433a0ded55363aae37416b7c", "inherits@~2.0.3": "https://registry.yarnpkg.com/inherits/-/inherits-2.0.4.tgz#0fa2c64f932917c3433a0ded55363aae37416b7c", "ini@^1.3.4": "https://registry.yarnpkg.com/ini/-/ini-1.3.8.tgz#a29da425b48806f34767a4efce397269af28432c", "interpret@~1.1.0": "https://registry.yarnpkg.com/interpret/-/interpret-1.1.0.tgz#7ed1b1410c6a0e0f78cf95d3b8440c63f78b8614", @@ -193,11 +190,10 @@ "is-docker@^2.0.0": "https://registry.yarnpkg.com/is-docker/-/is-docker-2.2.1.tgz#33eeabe23cfe86f14bde4408a02c0cfb853acdaa", "is-docker@^2.1.1": "https://registry.yarnpkg.com/is-docker/-/is-docker-2.2.1.tgz#33eeabe23cfe86f14bde4408a02c0cfb853acdaa", "is-extglob@^2.1.1": "https://registry.yarnpkg.com/is-extglob/-/is-extglob-2.1.1.tgz#a88c02535791f02ed37c76a1b9ea9773c833f8c2", - "is-glob@^4.0.0": "https://registry.yarnpkg.com/is-glob/-/is-glob-4.0.1.tgz#7567dbe9f2f5e2467bc77ab83c4a29482407a5dc", + "is-glob@^4.0.0": "https://registry.yarnpkg.com/is-glob/-/is-glob-4.0.3.tgz#64f61e42cbbb2eec2071a9dac0b28ba1e65d5084", "is-glob@^4.0.3": "https://registry.yarnpkg.com/is-glob/-/is-glob-4.0.3.tgz#64f61e42cbbb2eec2071a9dac0b28ba1e65d5084", "is-number-like@^1.0.3": "https://registry.yarnpkg.com/is-number-like/-/is-number-like-1.0.8.tgz#2e129620b50891042e44e9bbbb30593e75cfbbe3", "is-number@^7.0.0": "https://registry.yarnpkg.com/is-number/-/is-number-7.0.0.tgz#7535345b896734d5f80c4d06c50955527a14f12b", - "is-path-inside@^3.0.3": "https://registry.yarnpkg.com/is-path-inside/-/is-path-inside-3.0.3.tgz#d231362e53a07ff2b0e0ea7fed049161ffd16283", "is-plain-object@^2.0.3": "https://registry.yarnpkg.com/is-plain-object/-/is-plain-object-2.0.4.tgz#2c163b3fafb1b606d9d17928f05c2a1c38e07677", "is-plain-object@^2.0.4": "https://registry.yarnpkg.com/is-plain-object/-/is-plain-object-2.0.4.tgz#2c163b3fafb1b606d9d17928f05c2a1c38e07677", "is-relative@^1.0.0": 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"https://registry.yarnpkg.com/liftup/-/liftup-3.0.1.tgz#1cb81aff0f368464ed3a5f1a7286372d6b1a60ce", @@ -231,37 +229,36 @@ "magic-wand-tool@~1.1.7": "https://registry.yarnpkg.com/magic-wand-tool/-/magic-wand-tool-1.1.7.tgz#c1d49c5f26307bec06eb8c6ac51e03fff5b9d61b", "make-iterator@^1.0.0": "https://registry.yarnpkg.com/make-iterator/-/make-iterator-1.0.1.tgz#29b33f312aa8f547c4a5e490f56afcec99133ad6", "map-cache@^0.2.0": "https://registry.yarnpkg.com/map-cache/-/map-cache-0.2.2.tgz#c32abd0bd6525d9b051645bb4f26ac5dc98a0dbf", - "micromatch@^4.0.2": "https://registry.yarnpkg.com/micromatch/-/micromatch-4.0.4.tgz#896d519dfe9db25fce94ceb7a500919bf881ebf9", - "micromatch@^4.0.4": "https://registry.yarnpkg.com/micromatch/-/micromatch-4.0.5.tgz#bc8999a7cbbf77cdc89f132f6e467051b49090c6", + "micromatch@^4.0.2": "https://registry.yarnpkg.com/micromatch/-/micromatch-4.0.8.tgz#d66fa18f3a47076789320b9b1af32bd86d9fa202", + "micromatch@^4.0.4": 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"https://registry.yarnpkg.com/which/-/which-2.0.2.tgz#7c6a8dd0a636a0327e10b59c9286eee93f3f51b1", "wrappy@1": "https://registry.yarnpkg.com/wrappy/-/wrappy-1.0.2.tgz#b5243d8f3ec1aa35f1364605bc0d1036e30ab69f", - "ws@^3.2.0": "https://registry.yarnpkg.com/ws/-/ws-3.3.3.tgz#f1cf84fe2d5e901ebce94efaece785f187a228f2", - "xtend@^4.0.0": "https://registry.yarnpkg.com/xtend/-/xtend-4.0.2.tgz#bb72779f5fa465186b1f438f674fa347fdb5db54", "yocto-queue@^0.1.0": "https://registry.yarnpkg.com/yocto-queue/-/yocto-queue-0.1.0.tgz#0294eb3dee05028d31ee1a5fa2c556a6aaf10a1b" }, "files": [], diff --git a/demo/stable/node_modules/dwv/decoders/pdfjs/readme.md b/demo/stable/node_modules/dwv/decoders/pdfjs/readme.md index c16f68d5..2ca911b4 100644 --- a/demo/stable/node_modules/dwv/decoders/pdfjs/readme.md +++ b/demo/stable/node_modules/dwv/decoders/pdfjs/readme.md @@ -1,15 +1,14 @@ -Third Party: pdf.js -===================== +# Third Party: pdf.js -* Web: https://github.com/mozilla/pdf.js -* Version: v1.1.1 (pdf.js) and commit fcaf281 of jpambrun -* Date: copied on 05/05/2015 -* Download: - * [jpg.js](https://github.com/mozilla/pdf.js/blob/master/src/core/jpg.js) modified as in - https://github.com/notmasteryet/jpgjs/pull/33 - * [jpx.js](https://github.com/jpambrun/jpx-medical/blob/master/jpx.js) - * [arithmetic_decoder.js](https://github.com/mozilla/pdf.js/blob/v1.1.1/src/core/arithmetic_decoder.js) - * [util.js](https://github.com/mozilla/pdf.js/blob/v1.1.1/src/shared/util.js) -* License: Apache 2.0 (see [license.txt](https://github.com/mozilla/pdf.js/blob/master/LICENSE)) -* Description: Mozilla's JPEG and JPEG2000 decoder from PDF.js with added support for 16 bit signed grayscale images. -* Purpose for dwv: read DICOM files containing JPEG or JPEG2000 data. +- Web: https://github.com/mozilla/pdf.js +- Version: v1.1.1 (pdf.js) and commit fcaf281 of jpambrun +- Date: copied on 05/05/2015 +- Download: +- [jpg.js](https://github.com/mozilla/pdf.js/blob/master/src/core/jpg.js) modified as in + https://github.com/notmasteryet/jpgjs/pull/33 +- [jpx.js](https://github.com/jpambrun/jpx-medical/blob/master/jpx.js) +- [arithmetic_decoder.js](https://github.com/mozilla/pdf.js/blob/v1.1.1/src/core/arithmetic_decoder.js) +- [util.js](https://github.com/mozilla/pdf.js/blob/v1.1.1/src/shared/util.js) +- License: Apache 2.0 (see [license.txt](https://github.com/mozilla/pdf.js/blob/master/LICENSE)) +- Description: Mozilla's JPEG and JPEG2000 decoder from PDF.js with added support for 16 bit signed grayscale images. +- Purpose for dwv: read DICOM files containing JPEG or JPEG2000 data. diff --git a/demo/stable/node_modules/dwv/decoders/rii-mango/readme.md b/demo/stable/node_modules/dwv/decoders/rii-mango/readme.md index 5fd2d0fe..b114a312 100644 --- a/demo/stable/node_modules/dwv/decoders/rii-mango/readme.md +++ b/demo/stable/node_modules/dwv/decoders/rii-mango/readme.md @@ -1,12 +1,11 @@ -Third Party: rii-mango -====================== +# Third Party: rii-mango -JPEGLosslessDecoderJS ---------------------- -* Web: https://github.com/rii-mango/JPEGLosslessDecoderJS -* Version: [2.0.2](https://github.com/rii-mango/JPEGLosslessDecoderJS/releases/tag/v2.0.2) -* Date: 19/03/2017 -* Download: see release -* License: MIT (see https://github.com/rii-mango/JPEGLosslessDecoderJS/blob/v2.0.2/LICENSE) -* Description: JPEG Lossless decoder. -* Purpose for dwv: Decode JPEG embeded in DICOM. +## JPEGLosslessDecoderJS + +- Web: https://github.com/rii-mango/JPEGLosslessDecoderJS +- Version: [2.0.2](https://github.com/rii-mango/JPEGLosslessDecoderJS/releases/tag/v2.0.2) +- Date: 19/03/2017 +- Download: see release +- License: MIT (see https://github.com/rii-mango/JPEGLosslessDecoderJS/blob/v2.0.2/LICENSE) +- Description: JPEG Lossless decoder. +- Purpose for dwv: Decode JPEG embeded in DICOM. diff --git a/demo/stable/node_modules/dwv/dist/dwv.d.ts b/demo/stable/node_modules/dwv/dist/dwv.d.ts index 4d90ba08..4f87dc22 100644 --- a/demo/stable/node_modules/dwv/dist/dwv.d.ts +++ b/demo/stable/node_modules/dwv/dist/dwv.d.ts @@ -1,10 +1,312 @@ +import Konva from 'konva'; + /** * Add tags to the dictionary. * * @param {string} group The group key. - * @param {object} tags The tags to add. + * @param {Object} tags The tags to add as an + * object indexed by element key with values as: + * [VR, multiplicity, TagName] (all strings). + */ +export declare function addTagsToDictionary(group: string, tags: { + [x: string]: string[]; +}): void; + +/** + * Image annotation. + */ +export declare class Annotation { + /** + * The ID. + * + * @type {string} + */ + id: string; + /** + * The reference image SOP UID. + * + * @type {string} + */ + referenceSopUID: string; + /** + * The mathematical shape. + * + * @type {object} + */ + mathShape: object; + /** + * Additional points used to define the annotation. + * + * @type {Point2D[]|undefined} + */ + referencePoints: Point2D[] | undefined; + /** + * The color: for example 'green', '#00ff00' or 'rgb(0,255,0)'. + * + * @type {string|undefined} + */ + colour: string | undefined; + /** + * Annotation quantification. + * + * @type {object|undefined} + */ + quantification: object | undefined; + /** + * Text expression. Can contain variables surrounded with '{}' that will + * be extracted from the quantification object. + * + * @type {string|undefined} + */ + textExpr: string | undefined; + /** + * Label position. If undefined, the default shape + * label position will be used. + * + * @type {Point2D|undefined} + */ + labelPosition: Point2D | undefined; + /** + * The plane origin, the 3D position of index [0, 0, k]. + * + * @type {Point3D|undefined} + */ + planeOrigin: Point3D | undefined; + /** + * A couple of points that help define the annotation plane. + * + * @type {Point3D[]|undefined} + */ + planePoints: Point3D[] | undefined; + /** + * Get the orientation name for this annotation. + * + * @returns {string|undefined} The orientation name, + * undefined if same as reference data. + */ + getOrientationName(): string | undefined; + /** + * Initialise the annotation. + * + * @param {ViewController} viewController The associated view controller. + */ + init(viewController: ViewController): void; + /** + * Check if an input view is compatible with the annotation. + * + * @param {PlaneHelper} planeHelper The input view to check. + * @returns {boolean} True if compatible view. + */ + isCompatibleView(planeHelper: PlaneHelper): boolean; + /** + * Set the associated view controller if it is compatible. + * + * @param {ViewController} viewController The view controller. + */ + setViewController(viewController: ViewController): void; + /** + * Get the centroid of the math shape. + * + * @returns {Point|undefined} The 3D centroid point. + */ + getCentroid(): Point | undefined; + /** + * Set the annotation text expression. + * + * @param {Object.} labelText The list of label + * texts indexed by modality. + */ + setTextExpr(labelText: { + [x: string]: string; + }): void; + /** + * Get the annotation label text by applying the + * text expression on the current quantification. + * + * @returns {string} The resulting text. + */ + getText(): string; + /** + * Update the annotation quantification. + */ + updateQuantification(): void; + /** + * Get the math shape associated draw factory. + * + * @returns {object} The factory. + */ + getFactory(): object; + #private; +} + +/** + * Annotation group. + */ +export declare class AnnotationGroup { + /** + * @param {Annotation[]} [list] Optional list, will + * create new if not provided. + */ + constructor(list?: Annotation[]); + /** + * Get the annotation group as an array. + * + * @returns {Annotation[]} The array. + */ + getList(): Annotation[]; + /** + * Get the number of annotations of this list. + * + * @returns {number} The number of annotations. + */ + getLength(): number; + /** + * Check if the annotation group is editable. + * + * @returns {boolean} True if editable. + */ + isEditable(): boolean; + /** + * Set the annotation group editability. + * + * @param {boolean} flag True to make the annotation group editable. + */ + setEditable(flag: boolean): void; + /** + * Get the group colour. + * + * @returns {string} The colour as hex string. + */ + getColour(): string; + /** + * Set the group colour. + * + * @param {string} colour The colour as hex string. + */ + setColour(colour: string): void; + /** + * Add a new annotation. + * + * @param {Annotation} annotation The annotation to add. + */ + add(annotation: Annotation): void; + /** + * Update an existing annotation. + * + * @param {Annotation} annotation The annotation to update. + * @param {string[]} [propKeys] Optional properties that got updated. + */ + update(annotation: Annotation, propKeys?: string[]): void; + /** + * Remove an annotation. + * + * @param {string} id The id of the annotation to remove. + */ + remove(id: string): void; + /** + * Set the associated view controller. + * + * @param {ViewController} viewController The associated view controller. + */ + setViewController(viewController: ViewController): void; + /** + * Find an annotation. + * + * @param {string} id The id of the annotation to find. + * @returns {Annotation|undefined} The found annotation. + */ + find(id: string): Annotation | undefined; + /** + * Get the meta data. + * + * @returns {Object} The meta data. + */ + getMeta(): { + [x: string]: any; + }; + /** + * Check if this list contains a meta data value. + * + * @param {string} key The key to check. + * @returns {boolean} True if the meta data is present. + */ + hasMeta(key: string): boolean; + /** + * Get a meta data value. + * + * @param {string} key The meta data key. + * @returns {string|object} The meta data value. + */ + getMetaValue(key: string): string | object; + /** + * Set a meta data. + * + * @param {string} key The meta data key. + * @param {string|object} value The value of the meta data. + */ + setMetaValue(key: string, value: string | object): void; + /** + * Add an event listener to this class. + * + * @param {string} type The event type. + * @param {Function} callback The function associated with the provided + * event type, will be called with the fired event. + */ + addEventListener(type: string, callback: Function): void; + /** + * Remove an event listener from this class. + * + * @param {string} type The event type. + * @param {Function} callback The function associated with the provided + * event type. + */ + removeEventListener(type: string, callback: Function): void; + #private; +} + +/** + * {@link AnnotationGroup} factory. */ -export declare function addTagsToDictionary(group: string, tags: object): void; +export declare class AnnotationGroupFactory { + /** + * Get a warning string if elements are not as expected. + * Created by checkElements. + * + * @returns {string|undefined} The warning. + */ + getWarning(): string | undefined; + /** + * Check dicom elements. Throws an error if not suitable. + * + * @param {Object} dataElements The DICOM data elements. + * @returns {string|undefined} A possible warning. + */ + checkElements(dataElements: { + [x: string]: DataElement; + }): string | undefined; + /** + * Get an {@link Annotation} object from the read DICOM file. + * + * @param {Object} dataElements The DICOM tags. + * @returns {AnnotationGroup} A new annotation group. + */ + create(dataElements: { + [x: string]: DataElement; + }): AnnotationGroup; + /** + * Convert an annotation group into a DICOM SR object. + * + * @param {AnnotationGroup} annotationGroup The annotation group. + * @param {Object} [extraTags] Optional list of extra tags. + * @returns {Object} A list of dicom elements. + */ + toDicom(annotationGroup: AnnotationGroup, extraTags?: { + [x: string]: any; + }): { + [x: string]: DataElement; + }; + #private; +} /** * List of ViewConfigs indexed by dataIds. @@ -29,82 +331,91 @@ export declare function addTagsToDictionary(group: string, tags: object): void; */ export declare class App { /** - * Get the image. + * Get a DicomData. * - * @param {number} index The data index. - * @returns {Image} The associated image. + * @param {string} dataId The data id. + * @returns {DicomData|undefined} The data. */ - getImage(index: number): Image_2; + getData(dataId: string): DicomData | undefined; /** - * Get the last loaded image. + * Get the image. * - * @returns {Image} The image. + * @param {string} dataId The data id. + * @returns {Image|undefined} The associated image. + * @deprecated Since v0.34, please use the getData method. */ - getLastImage(): Image_2; + getImage(dataId: string): Image_2 | undefined; /** - * Set the image at the given index. + * Set the image at the given id. * - * @param {number} index The data index. + * @param {string} dataId The data id. * @param {Image} img The associated image. */ - setImage(index: number, img: Image_2): void; + setImage(dataId: string, img: Image_2): void; /** - * Set the last image. + * Add a new DicomData. * - * @param {Image} img The associated image. + * @param {DicomData} data The new data. + * @returns {string} The data id. */ - setLastImage(img: Image_2): void; + addData(data: DicomData): string; /** - * Add a new image. + * Get the meta data. * - * @param {Image} image The new image. - * @param {object} meta The image meta. - * @returns {number} The new image id. + * @param {string} dataId The data id. + * @returns {Object|undefined} The list of meta data. */ - addNewImage(image: Image_2, meta: object): number; + getMetaData(dataId: string): { + [x: string]: DataElement; + } | undefined; /** - * Get the meta data. + * Get the list of ids in the data storage. * - * @param {number} index The data index. - * @returns {object} The list of meta data. + * @returns {string[]} The list of data ids. */ - getMetaData(index: number): object; + getDataIds(): string[]; /** - * Get the number of loaded data. + * Get the list of dataIds that contain the input UIDs. * - * @returns {number} The number. + * @param {string[]} uids A list of UIDs. + * @returns {string[]} The list of dataIds that contain the UIDs. */ - getNumberOfLoadedData(): number; + getDataIdsFromSopUids(uids: string[]): string[]; /** - * Can the data be scrolled? + * Can the data (of the active view of the active layer) be scrolled? * * @returns {boolean} True if the data has a third dimension greater than one. + * @deprecated Since v0.33, please use the ViewController + * equivalent directly instead. */ canScroll(): boolean; /** - * Can window and level be applied to the data? + * Can window and level be applied to the data + * (of the active view of the active layer)? * * @returns {boolean} True if the data is monochrome. + * @deprecated Since v0.33, please use the ViewController + * equivalent directly instead. */ canWindowLevel(): boolean; /** - * Get the layer scale on top of the base scale. + * Get the active layer group scale on top of the base scale. * - * @returns {object} The scale as {x,y}. + * @returns {Scalar3D} The scale as {x,y,z}. */ - getAddedScale(): object; + getAddedScale(): Scalar3D; /** - * Get the base scale. + * Get the base scale of the active layer group. * - * @returns {object} The scale as {x,y}. + * @returns {Scalar3D} The scale as {x,y,z}. */ - getBaseScale(): object; + getBaseScale(): Scalar3D; /** - * Get the layer offset. + * Get the layer offset of the active layer group. * - * @returns {object} The offset. + * @returns {Scalar3D} The offset as {x,y,z}. */ - getOffset(): object; + getOffset(): Scalar3D; /** * Get the toolbox controller. * @@ -115,25 +426,51 @@ export declare class App { * Get the active layer group. * The layer is available after the first loaded item. * - * @returns {LayerGroup} The layer group. + * @returns {LayerGroup|undefined} The layer group. */ - getActiveLayerGroup(): LayerGroup; + getActiveLayerGroup(): LayerGroup | undefined; /** - * Get the view layers associated to a data index. + * Set the active layer group. + * + * @param {number} index The layer group index. + */ + setActiveLayerGroup(index: number): void; + /** + * Get the view layers associated to a data id. * The layer are available after the first loaded item. * - * @param {number} index The data index. + * @param {string} dataId The data id. * @returns {ViewLayer[]} The layers. */ - getViewLayersByDataIndex(index: number): ViewLayer[]; + getViewLayersByDataId(dataId: string): ViewLayer[]; + /** + * Get a list of view layers according to an input callback function. + * + * @param {Function} [callbackFn] A function that takes + * a ViewLayer as input and returns a boolean. If undefined, + * returns all view layers. + * @returns {ViewLayer[]} The layers that + * satisfy the callbackFn. + */ + getViewLayers(callbackFn?: Function): ViewLayer[]; /** - * Get the draw layers associated to a data index. + * Get the draw layers associated to a data id. * The layer are available after the first loaded item. * - * @param {number} index The data index. + * @param {string} dataId The data id. * @returns {DrawLayer[]} The layers. */ - getDrawLayersByDataIndex(index: number): DrawLayer[]; + getDrawLayersByDataId(dataId: string): DrawLayer[]; + /** + * Get a list of draw layers according to an input callback function. + * + * @param {Function} [callbackFn] A function that takes + * a DrawLayer as input and returns a boolean. If undefined, + * returns all draw layers. + * @returns {DrawLayer[]} The layers that + * satisfy the callbackFn. + */ + getDrawLayers(callbackFn?: Function): DrawLayer[]; /** * Get a layer group by div id. * The layer is available after the first loaded item. @@ -162,10 +499,19 @@ export declare class App { * @function */ addToUndoStack: (cmd: object) => void; + /** + * Remove a command from the undo stack. + * + * @param {string} name The name of the command to remove. + * @returns {boolean} True if the command was found and removed. + * @fires UndoStack#undoremove + * @function + */ + removeFromUndoStack: (name: string) => boolean; /** * Initialise the application. * - * @param {AppOptions} opt The application options + * @param {AppOptions} opt The application options. * @example * // create the dwv app * const app = new dwv.App(); @@ -227,8 +573,8 @@ export declare class App { * @fires App#loadprogress * @fires App#loaditem * @fires App#loadend - * @fires App#loaderror - * @fires App#loadabort + * @fires App#error + * @fires App#abort * @function */ loadFiles: (files: File[]) => void; @@ -237,15 +583,15 @@ export declare class App { * * @param {string[]} urls The list of urls to load. * @param {object} [options] The options object, can contain: - * - requestHeaders: an array of {name, value} to use as request headers - * - withCredentials: boolean xhr.withCredentials flag to pass to the request - * - batchSize: the size of the request url batch + * - requestHeaders: an array of {name, value} to use as request headers, + * - withCredentials: boolean xhr.withCredentials flag to pass to the request, + * - batchSize: the size of the request url batch. * @fires App#loadstart * @fires App#loadprogress * @fires App#loaditem * @fires App#loadend - * @fires App#loaderror - * @fires App#loadabort + * @fires App#error + * @fires App#abort * @function */ loadURLs: (urls: string[], options?: object) => void; @@ -266,15 +612,21 @@ export declare class App { * @fires App#loadprogress * @fires App#loaditem * @fires App#loadend - * @fires App#loaderror - * @fires App#loadabort + * @fires App#error + * @fires App#abort * @function */ loadImageObject: (data: any[]) => void; /** - * Abort the current load. + * Abort all the current loads. + */ + abortAllLoads(): void; + /** + * Abort an individual data load. + * + * @param {string} dataId The data to stop loading. */ - abortLoad(): void; + abortLoad(dataId: string): void; /** * Fit the display to the data of each layer group. * To be called once the image is loaded. @@ -282,8 +634,38 @@ export declare class App { fitToContainer(): void; /** * Init the Window/Level display + * (of the active layer of the active layer group). + * + * @deprecated Since v0.33, please set the opacity + * of the desired view layer directly. */ initWLDisplay(): void; + /** + * Set the imageSmoothing flag value. Default is false. + * + * @param {boolean} flag True to enable smoothing. + */ + setImageSmoothing(flag: boolean): void; + /** + * Get the layer group configuration from a data id. + * + * @param {string} dataId The data id. + * @param {boolean} [excludeStarConfig] Exclude the star config + * (default to false). + * @returns {ViewConfig[]} The list of associated configs. + */ + getViewConfigs(dataId: string, excludeStarConfig?: boolean): ViewConfig[]; + /** + * Get the layer group configuration for a data id and group + * div id. + * + * @param {string} dataId The data id. + * @param {string} groupDivId The layer group div id. + * @param {boolean} [excludeStarConfig] Exclude the star config + * (default to false). + * @returns {ViewConfig|undefined} The associated config. + */ + getViewConfig(dataId: string, groupDivId: string, excludeStarConfig?: boolean): ViewConfig | undefined; /** * Get the data view config. * Carefull, returns a reference, do not modify without resetting. @@ -302,20 +684,44 @@ export declare class App { setDataViewConfigs(configs: { [x: string]: ViewConfig[]; }): void; + /** + * Add a data view config. + * + * @param {string} dataId The data id. + * @param {ViewConfig} config The view configuration. + */ + addDataViewConfig(dataId: string, config: ViewConfig): void; + /** + * Remove a data view config. + * + * @param {string} dataId The data id. + * @param {string} divId The div id. + */ + removeDataViewConfig(dataId: string, divId: string): void; + /** + * Update an existing data view config. + * Removes and re-creates the layer if found. + * + * @param {string} dataId The data id. + * @param {string} divId The div id. + * @param {ViewConfig} config The view configuration. + */ + updateDataViewConfig(dataId: string, divId: string, config: ViewConfig): void; /** * Set the layer groups binders. * - * @param {Array} list The list of binder names. + * @param {string[]} list The list of binder names. */ - setLayerGroupsBinders(list: any[]): void; + setLayerGroupsBinders(list: string[]): void; /** * Render the current data. * - * @param {number} dataIndex The data index to render. + * @param {string} dataId The data id to render. + * @param {ViewConfig[]} [viewConfigs] The list of configs to render. */ - render(dataIndex: number): void; + render(dataId: string, viewConfigs?: ViewConfig[]): void; /** - * Zoom to the layers. + * Zoom the layers of the active layer group. * * @param {number} step The step to add to the current zoom. * @param {number} cx The zoom center X coordinate. @@ -323,37 +729,38 @@ export declare class App { */ zoom(step: number, cx: number, cy: number): void; /** - * Apply a translation to the layers. + * Apply a translation to the layers of the active layer group. * * @param {number} tx The translation along X. * @param {number} ty The translation along Y. */ translate(tx: number, ty: number): void; /** - * Set the image layer opacity. + * Set the active view layer (of the active layer group) opacity. * * @param {number} alpha The opacity ([0:1] range). + * @deprecated Since v0.33, pplease set the opacity + * of the desired view layer directly. */ setOpacity(alpha: number): void; /** - * Set the drawings on the current stage. + * Set the drawings of the active layer group. * + * @deprecated Since v0.34, please switch to DICOM SR annotations. * @param {Array} drawings An array of drawings. * @param {Array} drawingsDetails An array of drawings details. + * @param {string} dataId The converted data id. */ - setDrawings(drawings: any[], drawingsDetails: any[]): void; - /** - * Get the JSON state of the app. - * - * @returns {string} The state of the app as a JSON string. - */ - getJsonState(): string; + setDrawings(drawings: any[], drawingsDetails: any[], dataId: string): void; /** * Apply a JSON state to this app. * + * @deprecated Since v0.34, please switch to DICOM SR + * for annotations. * @param {string} jsonState The state of the app as a JSON string. + * @param {string} dataId The state data id. */ - applyJsonState(jsonState: string): void; + applyJsonState(jsonState: string, dataId: string): void; /** * Handle resize: fit the display to the window. * To be called once the image is loaded. @@ -372,12 +779,14 @@ export declare class App { onKeydown: (event: KeyboardEvent) => void; /** * Key down event handler example. - * - CRTL-Z: undo - * - CRTL-Y: redo - * - CRTL-ARROW_LEFT: next element on fourth dim - * - CRTL-ARROW_UP: next element on third dim - * - CRTL-ARROW_RIGHT: previous element on fourth dim - * - CRTL-ARROW_DOWN: previous element on third dim + * - CRTL-Z: undo, + * - CRTL-Y: redo, + * - CRTL-ARROW_LEFT: next element on fourth dim, + * - CRTL-ARROW_UP: next element on third dim, + * - CRTL-ARROW_RIGHT: previous element on fourth dim, + * - CRTL-ARROW_DOWN: previous element on third dim. + * + * Applies to the active view of the active layer group. * * @param {KeyboardEvent} event The key down event. * @fires UndoStack#undo @@ -386,27 +795,31 @@ export declare class App { */ defaultOnKeydown: (event: KeyboardEvent) => void; /** - * Reset the display + * Reset the display. */ resetDisplay(): void; /** - * Reset the app zoom.s + * Reset the app zoom. */ resetZoom(): void; /** - * Set the colour map. + * Set the colour map of the active view of the active layer group. * * @param {string} name The colour map name. + * @deprecated Since v0.33, please use the ViewController + * equivalent directly instead. */ setColourMap(name: string): void; /** - * Set the window/level preset. + * Set the window/level preset of the active view of the active layer group. * - * @param {object} preset The window/level preset. + * @param {string} preset The window/level preset. + * @deprecated Since v0.33, please use the ViewController + * equivalent directly instead. */ - setWindowLevelPreset(preset: object): void; + setWindowLevelPreset(preset: string): void; /** - * Set the tool + * Set the tool. * * @param {string} tool The tool. */ @@ -418,13 +831,13 @@ export declare class App { */ setToolFeatures(list: object): void; /** - * Undo the last action + * Undo the last action. * * @fires UndoStack#undo */ undo(): void; /** - * Redo the last action + * Redo the last action. * * @fires UndoStack#redo */ @@ -441,6 +854,42 @@ export declare class App { * @returns {number} The stack index. */ getCurrentStackIndex(): number; + /** + * Get the overlay data for a data id. + * + * @param {string} dataId The data id. + * @returns {OverlayData|undefined} The overlay data. + */ + getOverlayData(dataId: string): OverlayData | undefined; + /** + * Toggle overlay listeners. + * + * @param {string} dataId The data id. + */ + toggleOverlayListeners(dataId: string): void; + /** + * Create new annotation data based on the data of + * the active view layer. + * + * @param {string} refDataId The reference data id. + * @returns {DicomData} The new data. + */ + createAnnotationData(refDataId: string): DicomData; + /** + * Add new data and render it with a simple new data view config. + * + * @param {DicomData} data The data to add. + * @param {string} divId The div where to draw. + * @param {string} refDataId The reference data id. + */ + addAndRenderAnnotationData(data: DicomData, divId: string, refDataId: string): void; + /** + * Add a draw layer. + * + * @param {string} dataId The data id. + * @param {ViewConfig} viewConfig The data view config. + */ + addDrawLayer(dataId: string, viewConfig: ViewConfig): void; #private; } @@ -449,20 +898,20 @@ export declare class App { */ export declare class AppOptions { /** - * @param {Object} dataViewConfigs DataId + * @param {Object} [dataViewConfigs] Optional dataId * indexed object containing the data view configurations. */ - constructor(dataViewConfigs: { + constructor(dataViewConfigs?: { [x: string]: ViewConfig[]; }); /** * DataId indexed object containing the data view configurations. * - * @type {Object} + * @type {Object|undefined} */ dataViewConfigs: { [x: string]: ViewConfig[]; - }; + } | undefined; /** * Tool name indexed object containing individual tool configurations. * @@ -479,25 +928,46 @@ export declare class AppOptions { binders: string[] | undefined; /** * Optional boolean flag to trigger the first data render - * after the first loaded data or not. Defaults to true; + * after the first loaded data or not. Defaults to true. * * @type {boolean|undefined} */ viewOnFirstLoadItem: boolean | undefined; /** - * Optional default chraracter set string used for DICOM parsing if - * not passed in DICOM file. - * Valid values: https://developer.mozilla.org/en-US/docs/Web/API/Encoding_API/Encodings + * Optional default chraracterset string used for DICOM parsing if + * not passed in DICOM file. + * + * Valid values: {@link https://developer.mozilla.org/en-US/docs/Web/API/Encoding_API/Encodings}. * * @type {string|undefined} */ defaultCharacterSet: string | undefined; + /** + * Optional overlay config. + * + * @type {object|undefined} + */ + overlayConfig: object | undefined; + /** + * DOM root document. + * + * @type {DocumentFragment} + */ + rootDocument: DocumentFragment; +} + +export declare namespace BLACK { + let r: number; + let g: number; + let b: number; } /** * Build a multipart message. - * See: https://en.wikipedia.org/wiki/MIME#Multipart_messages - * See: https://hg.orthanc-server.com/orthanc-dicomweb/file/tip/Resources/Samples/JavaScript/stow-rs.js + * + * Ref: + * - {@link https://en.wikipedia.org/wiki/MIME#Multipart_messages}, + * - {@link https://hg.orthanc-server.com/orthanc-dicomweb/file/tip/Resources/Samples/JavaScript/stow-rs.js}. * * @param {Array} parts The message parts as an array of object containing * content headers and messages as the data property (as returned by parse). @@ -507,30 +977,153 @@ export declare class AppOptions { export declare function buildMultipart(parts: any[], boundary: string): Uint8Array; /** - * Colour map: red, green and blue components - * to associate with intensity values. + * Change segment colour command. */ -export declare class ColourMap { +export declare class ChangeSegmentColourCommand { /** - * @param {number[]} red Red component. - * @param {number[]} green Green component. - * @param {number[]} blue Blue component. + * @param {Image} mask The mask image. + * @param {MaskSegment} segment The segment to modify. + * @param {RGB|number} newColour The new segment colour. + * @param {boolean} [silent] Whether to send a creation event or not. */ - constructor(red: number[], green: number[], blue: number[]); + constructor(mask: Image_2, segment: MaskSegment, newColour: RGB | number, silent?: boolean); /** - * Red component: 256 values in the [0, 255] range. + * Get the command name. * - * @type {number[]} + * @returns {string} The command name. */ - red: number[]; + getName(): string; /** - * Green component: 256 values in the [0, 255] range. + * Check if a command is valid and can be executed. * - * @type {number[]} + * @returns {boolean} True if the command is valid. */ - green: number[]; + isValid(): boolean; /** - * Blue component: 256 values in the [0, 255] range. + * Execute the command. + * + * @fires ChangeSegmentColourCommand#changemasksegmentcolour + */ + execute(): void; + /** + * Undo the command. + * + * @fires ChangeSegmentColourCommand#changemasksegmentcolour + */ + undo(): void; + /** + * Handle an execute event. + * + * @param {object} _event The execute event with type and id. + */ + onExecute(_event: object): void; + /** + * Handle an undo event. + * + * @param {object} _event The undo event with type and id. + */ + onUndo(_event: object): void; + #private; +} + +/** + * Circle shape. + */ +export declare class Circle { + /** + * @param {Point2D} centre A Point2D representing the centre + * of the circle. + * @param {number} radius The radius of the circle. + */ + constructor(centre: Point2D, radius: number); + /** + * Get the centre (point) of the circle. + * + * @returns {Point2D} The center (point) of the circle. + */ + getCenter(): Point2D; + /** + * Get the centroid of the circle. + * + * @returns {Point2D} The centroid point. + */ + getCentroid(): Point2D; + /** + * Get the radius of the circle. + * + * @returns {number} The radius of the circle. + */ + getRadius(): number; + /** + * Check for equality. + * + * @param {Circle} rhs The object to compare to. + * @returns {boolean} True if both objects are equal. + */ + equals(rhs: Circle): boolean; + /** + * Get the surface of the circle. + * + * @returns {number} The surface of the circle. + */ + getSurface(): number; + /** + * Get the surface of the circle according to a spacing. + * + * @param {Scalar2D} spacing2D The 2D spacing. + * @returns {number} The surface of the circle multiplied by the given + * spacing or null for null spacings. + */ + getWorldSurface(spacing2D: Scalar2D): number; + /** + * Get the rounded limits of the circle. + * + * See: {@link https://en.wikipedia.org/wiki/Circle#Equations}. + * + * Circle formula: `x*x + y*y = r*r`. + * + * Implies: `y = (+-) sqrt(r*r - x*x)`. + * + * @returns {number[][][]} The rounded limits: + * list of [x, y] pairs (min, max). + */ + getRound(): number[][][]; + /** + * Quantify an circle according to view information. + * + * @param {ViewController} viewController The associated view controller. + * @param {string[]} flags A list of stat values to calculate. + * @returns {object} A quantification object. + */ + quantify(viewController: ViewController, flags: string[]): object; + #private; +} + +/** + * Colour map: red, green and blue components + * to associate with intensity values. + */ +export declare class ColourMap { + /** + * @param {number[]} red Red component. + * @param {number[]} green Green component. + * @param {number[]} blue Blue component. + */ + constructor(red: number[], green: number[], blue: number[]); + /** + * Red component: 256 values in the [0, 255] range. + * + * @type {number[]} + */ + red: number[]; + /** + * Green component: 256 values in the [0, 255] range. + * + * @type {number[]} + */ + green: number[]; + /** + * Blue component: 256 values in the [0, 255] range. * * @type {number[]} */ @@ -540,36 +1133,42 @@ export declare class ColourMap { /** * Create an Image from DICOM elements. * - * @param {object} elements The DICOM elements. + * @param {Object} elements The DICOM elements. * @returns {Image} The Image object. */ -export declare function createImage(elements: object): Image_2; +export declare function createImage(elements: { + [x: string]: DataElement; +}): Image_2; /** * Create a mask Image from DICOM elements. * - * @param {object} elements The DICOM elements. + * @param {Object} elements The DICOM elements. * @returns {Image} The mask Image object. */ -export declare function createMaskImage(elements: object): Image_2; +export declare function createMaskImage(elements: { + [x: string]: DataElement; +}): Image_2; /** * Create a View from DICOM elements and image. * - * @param {object} elements The DICOM elements. + * @param {Object} elements The DICOM elements. * @param {Image} image The associated image. * @returns {View} The View object. */ -export declare function createView(elements: object, image: Image_2): View; +export declare function createView(elements: { + [x: string]: DataElement; +}, image: Image_2): View; export declare namespace customUI { /** * Open a dialogue to edit roi data. Defaults to window.prompt. * - * @param {object} data The roi data. + * @param {Annotation} annotation The roi data. * @param {Function} callback The callback to launch on dialogue exit. */ - export function openRoiDialog(data: any, callback: Function): void; + export function openRoiDialog(annotation: Annotation, callback: Function): void; } /** @@ -643,16 +1242,146 @@ export declare const decoderScripts: { /** * List of default window level presets. * - * @type {Object.>} + * @type {Object.>} */ export declare const defaultPresets: { [x: string]: { + [x: string]: WindowLevel; + }; +}; + +export declare namespace defaults { + let labelText: { [x: string]: { - center: number; - width: number; + [x: string]: string; }; }; -}; +} + +/** + * Delete segment command. + */ +export declare class DeleteSegmentCommand { + /** + * @param {Image} mask The mask image. + * @param {MaskSegment} segment The segment to remove. + * @param {boolean} [silent] Whether to send a creation event or not. + */ + constructor(mask: Image_2, segment: MaskSegment, silent?: boolean); + /** + * Get the command name. + * + * @returns {string} The command name. + */ + getName(): string; + /** + * Check if a command is valid and can be executed. + * + * @returns {boolean} True if the command is valid. + */ + isValid(): boolean; + /** + * Execute the command. + * + * @fires DeleteSegmentCommand#masksegmentdelete + */ + execute(): void; + /** + * Undo the command. + * + * @fires DeleteSegmentCommand#masksegmentredraw + */ + undo(): void; + /** + * Handle an execute event. + * + * @param {object} _event The execute event with type and id. + */ + onExecute(_event: object): void; + /** + * Handle an undo event. + * + * @param {object} _event The undo event with type and id. + */ + onUndo(_event: object): void; + #private; +} + +/** + * DICOM code: item of a basic code sequence. + * + * Ref: {@link https://dicom.nema.org/medical/dicom/2022a/output/chtml/part03/sect_8.8.html}. + */ +export declare class DicomCode { + /** + * @param {string} meaning The code meaning. + */ + constructor(meaning: string); + /** + * Code meaning. + * + * @type {string} + */ + meaning: string; + /** + * Code value. + * + * @type {string|undefined} + */ + value: string | undefined; + /** + * Long code value. + * + * @type {string|undefined} + */ + longValue: string | undefined; + /** + * URN code value. + * + * @type {string|undefined} + */ + urnValue: string | undefined; + /** + * Coding scheme designator. + * + * @type {string|undefined} + */ + schemeDesignator: string | undefined; + /** + * Get a string representation of this object. + * + * @returns {string} The code as string. + */ + toString(): string; +} + +/** + * DICOM data: meta and possible image. + */ +export declare class DicomData { + /** + * @param {object} meta The DICOM meta data. + */ + constructor(meta: object); + /** + * DICOM meta data. + * + * @type {object} + */ + meta: object; + /** + * Image extracted from meta data. + * + * @type {Image|undefined} + */ + image: Image_2 | undefined; + /** + * Annotattion group extracted from meta data. + * + * @type {AnnotationGroup|undefined} + */ + annotationGroup: AnnotationGroup | undefined; +} /** * DicomParser class. @@ -717,6 +1446,55 @@ export declare class DicomParser { #private; } +/** + * DICOM SR content: item of a SR content sequence. + * + * Ref: {@link https://dicom.nema.org/medical/dicom/2022a/output/chtml/part03/sect_C.17.3.html}. + */ +export declare class DicomSRContent { + /** + * @param {string} valueType The content item value type. + */ + constructor(valueType: string); + /** + * Value type. + * + * @type {string} + */ + valueType: string; + /** + * Concept name code. + * + * @type {DicomCode|undefined} + */ + conceptNameCode: DicomCode | undefined; + /** + * Relationship Type. + * + * @type {string} + */ + relationshipType: string; + /** + * Content sequence (0040,A730). + * + * @type {DicomSRContent[]|undefined} + */ + contentSequence: DicomSRContent[] | undefined; + /** + * Value. + * + * @type {object} + */ + value: object; + /** + * Get a string representation of this object. + * + * @param {string} [prefix] An optional prefix for recursive content. + * @returns {string} The object as string. + */ + toString(prefix?: string): string; +} + /** * DICOM writer. * @@ -755,31 +1533,37 @@ export declare class DicomWriter { * @param {boolean} flag True to use UN VR. */ setUseUnVrForPrivateSq(flag: boolean): void; + /** + * Set the vr=UN check and fix flag. + * + * @param {boolean} flag True to activate the check and fix. + */ + setFixUnknownVR(flag: boolean): void; /** * Set the writing rules. - * List of writer rules indexed by either `default`, tagName or groupName. + * List of writer rules indexed by either `default`, + * tagKey, tagName or groupName. * Each DICOM element will be checked to see if a rule is applicable. - * First checked by tagName and then by groupName, + * First checked by tagKey, tagName and then by groupName, * if nothing is found the default rule is applied. * * @param {Object} rules The input rules. + * @param {boolean} [addMissingTags] If true, explicit tags that + * have replace rule and a value will be + * added if missing. Defaults to false. */ setRules(rules: { [x: string]: WriterRule; - }): void; + }, addMissingTags?: boolean): void; /** * Use a TextEncoder instead of the default text decoder. */ useSpecialTextEncoder(): void; - /** - * Use default anonymisation rules. - */ - useDefaultAnonymisationRules(): void; /** * Get the element to write according to the class rules. * Priority order: tagName, groupName, default. * - * @param {DataElement} element The element to check + * @param {DataElement} element The element to check. * @returns {DataElement|null} The element to write, can be null. */ getElementToWrite(element: DataElement): DataElement | null; @@ -795,6 +1579,106 @@ export declare class DicomWriter { #private; } +/** + * Draw controller. + */ +export declare class DrawController { + /** + * @param {AnnotationGroup} [group] Optional annotation group. + */ + constructor(group?: AnnotationGroup); + /** + * Get an annotation. + * + * @param {string} id The annotation id. + * @returns {Annotation|undefined} The annotation. + */ + getAnnotation(id: string): Annotation | undefined; + /** + * Get the annotation group. + * + * @returns {AnnotationGroup} The list. + */ + getAnnotationGroup(): AnnotationGroup; + /** + * Check if the annotation group is editable. + * + * @returns {boolean} True if editable. + */ + isAnnotationGroupEditable(): boolean; + /** + * Set the annotation group editability. + * + * @param {boolean} flag True to make the annotation group editable. + */ + setAnnotationGroupEditable(flag: boolean): void; + /** + * Add an annotation. + * + * @param {Annotation} annotation The annotation to add. + */ + addAnnotation(annotation: Annotation): void; + /** + * Update an anotation from the list. + * + * @param {Annotation} annotation The annotation to update. + * @param {string[]} [propKeys] Optional properties that got updated. + */ + updateAnnotation(annotation: Annotation, propKeys?: string[]): void; + /** + * Remove an anotation for the list. + * + * @param {string} id The id of the annotation to remove. + */ + removeAnnotation(id: string): void; + /** + * Remove an annotation via a remove command (triggers draw actions). + * + * @param {string} id The annotation id. + * @param {Function} exeCallback The undo stack callback. + */ + removeAnnotationWithCommand(id: string, exeCallback: Function): void; + /** + * Update an annotation via an update command (triggers draw actions). + * + * @param {string} id The annotation id. + * @param {object} originalProps The original annotation properties + * that will be updated. + * @param {object} newProps The new annotation properties + * that will replace the original ones. + * @param {Function} exeCallback The undo stack callback. + */ + updateAnnotationWithCommand(id: string, originalProps: object, newProps: object, exeCallback: Function): void; + /** + * Remove all annotations via remove commands (triggers draw actions). + * + * @param {Function} exeCallback The undo stack callback. + */ + removeAllAnnotationsWithCommand(exeCallback: Function): void; + /** + * Check if the annotation group contains a meta data value. + * + * @param {string} key The key to check. + * @returns {boolean} True if the meta data is present. + */ + hasAnnotationMeta(key: string): boolean; + /** + * Set an annotation meta data. + * + * @param {string} key The meta data to set. + * @param {string} value The value of the meta data. + */ + setAnnotationMeta(key: string, value: string): void; + #private; +} + +/** + * Debug function to output the layer hierarchy as text. + * + * @param {object} layer The Konva layer. + * @param {string} prefix A display prefix (used in recursion). + * @returns {string} A text representation of the hierarchy. + */ /** * Draw layer. */ @@ -805,47 +1689,63 @@ export declare class DrawLayer { */ constructor(containerDiv: HTMLDivElement); /** - * Get the associated data index. + * Set the draw shape handler. * - * @returns {number} The index. + * @param {DrawShapeHandler|undefined} handler The shape handler. + */ + setShapeHandler(handler: DrawShapeHandler | undefined): void; + /** + * Get the associated data id. + * + * @returns {string} The id. + */ + getDataId(): string; + /** + * Get the reference data id. + * + * @returns {string} The id. */ - getDataIndex(): number; + getReferenceLayerId(): string; /** * Get the Konva stage. * - * @returns {object} The stage. + * @returns {Konva.Stage} The stage. */ - getKonvaStage(): object; + getKonvaStage(): Konva.Stage; /** * Get the Konva layer. * - * @returns {object} The layer. + * @returns {Konva.Layer} The layer. */ - getKonvaLayer(): object; + getKonvaLayer(): Konva.Layer; /** * Get the draw controller. * - * @returns {object} The controller. + * @returns {DrawController} The controller. */ - getDrawController(): object; + getDrawController(): DrawController; /** * Set the plane helper. * - * @param {object} helper The helper. + * @param {PlaneHelper} helper The helper. */ - setPlaneHelper(helper: object): void; + setPlaneHelper(helper: PlaneHelper): void; /** * Get the id of the layer. * * @returns {string} The string id. */ getId(): string; + /** + * Remove the HTML element from the DOM. + */ + removeFromDOM(): void; /** * Get the layer base size (without scale). * - * @returns {object} The size as {x,y}. + * @returns {Scalar2D} The size as {x,y}. */ - getBaseSize(): object; + getBaseSize(): Scalar2D; /** * Get the layer opacity. * @@ -866,19 +1766,39 @@ export declare class DrawLayer { * Add a flip offset along the layer Y axis. */ addFlipOffsetY(): void; + /** + * Flip the scale along the layer X axis. + */ + flipScaleX(): void; + /** + * Flip the scale along the layer Y axis. + */ + flipScaleY(): void; + /** + * Flip the scale along the layer Z axis. + */ + flipScaleZ(): void; /** * Set the layer scale. * - * @param {object} newScale The scale as {x,y}. + * @param {Scalar3D} newScale The scale as {x,y,z}. * @param {Point3D} [center] The scale center. */ - setScale(newScale: object, center?: Point3D): void; + setScale(newScale: Scalar3D, center?: Point3D): void; + /** + * Initialise the layer scale. + * + * @param {Scalar3D} newScale The scale as {x,y,z}. + * @param {Scalar2D} absoluteZoomOffset The zoom offset as {x,y} + * without the fit scale (as provided by getAbsoluteZoomOffset). + */ + initScale(newScale: Scalar3D, absoluteZoomOffset: Scalar2D): void; /** * Set the layer offset. * - * @param {object} newOffset The offset as {x,y}. + * @param {Scalar3D} newOffset The offset as {x,y,z}. */ - setOffset(newOffset: object): void; + setOffset(newOffset: Scalar3D): void; /** * Set the base layer offset. Updates the layer offset. * @@ -901,54 +1821,93 @@ export declare class DrawLayer { isVisible(): boolean; /** * Draw the content (imageData) of the layer. - * The imageData variable needs to be set + * The imageData variable needs to be set. */ draw(): void; /** - * Initialise the layer: set the canvas and context + * Initialise the layer: set the canvas and context. * - * @param {object} size The image size as {x,y}. - * @param {object} spacing The image spacing as {x,y}. - * @param {number} index The associated data index. + * @param {Scalar2D} size The image size as {x,y}. + * @param {Scalar2D} spacing The image spacing as {x,y}. + * @param {string} refLayerId The reference image dataId. */ - initialise(size: object, spacing: object, index: number): void; + initialise(size: Scalar2D, spacing: Scalar2D, refLayerId: string): void; /** - * Fit the layer to its parent container. + * Set the annotation group. * - * @param {number} fitScale1D The 1D fit scale. - * @param {object} fitSize The fit size as {x,y}. - * @param {object} fitOffset The fit offset as {x,y}. + * @param {AnnotationGroup} annotationGroup The annotation group. + * @param {string} dataId The associated data id. + * @param {object} exeCallback The undo stack callback. */ - fitToContainer(fitScale1D: number, fitSize: object, fitOffset: object): void; + setAnnotationGroup(annotationGroup: AnnotationGroup, dataId: string, exeCallback: object): void; /** - * Check the visibility of a given group. + * Activate shapes at current position. * - * @param {string} id The id of the group. - * @returns {boolean} True if the group is visible. + * @param {boolean} flag The flag to activate or not. */ - isGroupVisible(id: string): boolean; + activateCurrentPositionShapes(flag: boolean): void; /** - * Toggle the visibility of a given group. + * Fit the layer to its parent container. * - * @param {string} id The id of the group. - * @returns {boolean} False if the group cannot be found. + * @param {Scalar2D} containerSize The container size as {x,y}. + * @param {number} divToWorldSizeRatio The div to world size ratio. + * @param {Scalar2D} fitOffset The fit offset as {x,y}. */ - toggleGroupVisibility(id: string): boolean; + fitToContainer(containerSize: Scalar2D, divToWorldSizeRatio: number, fitOffset: Scalar2D): void; /** - * Delete a Draw from the stage. + * Check the visibility of an annotation. * - * @param {string} id The id of the group to delete. - * @param {object} exeCallback The callback to call once the + * @param {string} id The id of the annotation. + * @returns {boolean} True if the annotation is visible. + */ + isAnnotationVisible(id: string): boolean; + /** + * Set the visibility of an annotation. + * + * @param {string} id The id of the annotation. + * @param {boolean} [visible] True to set to visible, + * will toggle visibility if not defined. + * @returns {boolean} False if the annotation shape cannot be found. + */ + setAnnotationVisibility(id: string, visible?: boolean): boolean; + /** + * Set the visibility of all labels. + * + * @param {boolean} [visible] True to set to visible, + * will toggle visibility if not defined. + */ + setLabelsVisibility(visible?: boolean): void; + /** + * Set a shape group label visibility according to + * this layer setting. + * + * @param {Konva.Group} shapeGroup The shape group. + */ + setLabelVisibility(shapeGroup: Konva.Group): void; + /** + * Delete a Draw from the stage. + * + * @deprecated Since v0.34, please switch to `annotationGroup.remove`. + * @param {string} _id The id of the group to delete. + * @param {Function} _exeCallback The callback to call once the * DeleteCommand has been executed. */ - deleteDraw(id: string, exeCallback: object): void; + deleteDraw(_id: string, _exeCallback: Function): void; /** * Delete all Draws from the stage. * - * @param {object} exeCallback The callback to call once the + * @deprecated Since v0.34, please switch to `annotationGroup.remove`. + * @param {Function} _exeCallback The callback to call once the * DeleteCommand has been executed. */ - deleteDraws(exeCallback: object): void; + deleteDraws(_exeCallback: Function): void; + /** + * Get the total number of draws of this layer + * (at all positions). + * + * @returns {number|undefined} The total number of draws. + */ + getNumberOfDraws(): number | undefined; /** * Enable and listen to container interaction events. */ @@ -961,10 +1920,23 @@ export declare class DrawLayer { * Set the current position. * * @param {Point} position The new position. - * @param {Index} index The new index. + * @param {Index} [index] Optional coresponding index. * @returns {boolean} True if the position was updated. */ - setCurrentPosition(position: Point, index: Index): boolean; + setCurrentPosition(position: Point, index?: Index): boolean; + /** + * Get the current position group. + * + * @returns {Konva.Group|undefined} The Konva.Group. + */ + getCurrentPosGroup(): Konva.Group | undefined; + /** + * Get a Konva group using its id. + * + * @param {string} id The group id. + * @returns {object|undefined} The Konva group. + */ + getGroup(id: string): object | undefined; /** * Add an event listener to this class. * @@ -984,6 +1956,149 @@ export declare class DrawLayer { #private; } +/** + * Draw shape handler: handle action on existing shapes. + */ +export declare class DrawShapeHandler { + /** + * @callback eventFn@callback eventFn + * @param {object} event The event. + */ + /** + * @param {App} app The associated application. + * @param {Function} eventCallback Event callback. + */ + constructor(app: App, eventCallback: Function); + /** + * Set the draw editor shape. + * + * @param {Konva.Shape} shape The shape to edit. + * @param {DrawLayer} drawLayer The layer the shape belongs to. + */ + setEditorShape(shape: Konva.Shape, drawLayer: DrawLayer): void; + /** + * Get the currently edited shape group. + * + * @returns {Konva.Group|undefined} The edited group. + */ + getEditorShapeGroup(): Konva.Group | undefined; + /** + * Get the currently edited annotation. + * + * @returns {Annotation|undefined} The edited annotation. + */ + getEditorAnnotation(): Annotation | undefined; + /** + * Disable and reset the shape editor. + */ + disableAndResetEditor(): void; + /** + * Store specific mouse over cursor. + * + * @param {string} cursor The cursor name. + */ + storeMouseOverCursor(cursor: string): void; + /** + * Handle shape group mouseout. + */ + onMouseOutShapeGroup(): void; + /** + * Add shape group listeners. + * + * @param {Konva.Group} shapeGroup The shape group to set on. + * @param {Annotation} annotation The associated annotation. + * @param {DrawLayer} drawLayer The origin draw layer. + */ + addShapeGroupListeners(shapeGroup: Konva.Group, annotation: Annotation, drawLayer: DrawLayer): void; + /** + * Remove shape group listeners. + * + * @param {Konva.Group} shapeGroup The shape group to set off. + */ + removeShapeListeners(shapeGroup: Konva.Group): void; + #private; +} + +/** + * Ellipse shape. + */ +export declare class Ellipse { + /** + * @param {Point2D} centre A Point2D representing the centre + * of the ellipse. + * @param {number} a The radius of the ellipse on the horizontal axe. + * @param {number} b The radius of the ellipse on the vertical axe. + */ + constructor(centre: Point2D, a: number, b: number); + /** + * Get the centre (point) of the ellipse. + * + * @returns {Point2D} The center (point) of the ellipse. + */ + getCenter(): Point2D; + /** + * Get the centroid of the ellipse. + * + * @returns {Point2D} The centroid point. + */ + getCentroid(): Point2D; + /** + * Get the radius of the ellipse on the horizontal axe. + * + * @returns {number} The radius of the ellipse on the horizontal axe. + */ + getA(): number; + /** + * Get the radius of the ellipse on the vertical axe. + * + * @returns {number} The radius of the ellipse on the vertical axe. + */ + getB(): number; + /** + * Check for equality. + * + * @param {Ellipse} rhs The object to compare to. + * @returns {boolean} True if both objects are equal. + */ + equals(rhs: Ellipse): boolean; + /** + * Get the surface of the ellipse. + * + * @returns {number} The surface of the ellipse. + */ + getSurface(): number; + /** + * Get the surface of the ellipse according to a spacing. + * + * @param {Scalar2D} spacing2D The 2D spacing. + * @returns {number} The surface of the ellipse multiplied by the given + * spacing or null for null spacings. + */ + getWorldSurface(spacing2D: Scalar2D): number; + /** + * Get the rounded limits of the ellipse. + * + * See: {@link https://en.wikipedia.org/wiki/Ellipse#Standard_equation}. + * + * Ellipse formula: `x*x / a*a + y*y / b*b = 1`. + * + * Implies: `y = (+-)(b/a) * sqrt(a*a - x*x)`. + * + * @returns {number[][][]} The rounded limits: + * list of [x, y] pairs (min, max). + */ + getRound(): number[][][]; + /** + * Quantify an ellipse according to view information. + * + * @param {ViewController} viewController The associated view controller. + * @param {string[]} flags A list of stat values to calculate. + * @returns {object} A quantification object. + */ + quantify(viewController: ViewController, flags: string[]): object; + #private; +} + /** * 2D/3D Geometry class. */ @@ -1036,9 +2151,9 @@ export declare class Geometry { /** * Get the object origins. * - * @returns {Array} The object origins. + * @returns {Point3D[]} The object origins. */ - getOrigins(): any[]; + getOrigins(): Point3D[]; /** * Check if a point is in the origin list. * @@ -1053,7 +2168,7 @@ export declare class Geometry { * Warning: the size comes as stored in DICOM, meaning that it could * be oriented. * - * @param {Matrix33} [viewOrientation] The view orientation (optional) + * @param {Matrix33} [viewOrientation] The view orientation (optional). * @returns {Size} The object size. */ getSize(viewOrientation?: Matrix33): Size; @@ -1062,7 +2177,7 @@ export declare class Geometry { * Warning: the spacing comes as stored in DICOM, meaning that it could * be oriented. * - * @param {Matrix33} [viewOrientation] The view orientation (optional) + * @param {Matrix33} [viewOrientation] The view orientation (optional). * @returns {Spacing} The object spacing. */ getSpacing(viewOrientation?: Matrix33): Spacing; @@ -1131,10 +2246,10 @@ export declare class Geometry { * Check that a index is within bounds. * * @param {Index} index The index to check. - * @param {Array} [dirs] Optional list of directions to check. + * @param {number[]} [dirs] Optional list of directions to check. * @returns {boolean} True if the given coordinates are within bounds. */ - isIndexInBounds(index: Index, dirs?: any[]): boolean; + isIndexInBounds(index: Index, dirs?: number[]): boolean; /** * Convert an index into world coordinates. * @@ -1166,6 +2281,23 @@ export declare class Geometry { #private; } +/** + * Get the default DICOM seg tags as an object. + * + * @returns {object} The default tags. + */ +export declare function getDefaultDicomSegJson(): object; + +/** + * Get a simple dicom element item from a content item object. + * + * @param {DicomSRContent} content The content item object. + * @returns {Object} The item as a list of (key, value) pairs. + */ +export declare function getDicomSRContentItem(content: DicomSRContent): { + [x: string]: any; +}; + /** * List of DICOM data elements indexed via a 8 character string formed from * the group and element numbers. @@ -1180,28 +2312,58 @@ export declare class Geometry { export declare function getDwvVersion(): string; /** - * Get the DICOM elements from a 'simple' DICOM json tags object. - * The json is a simplified version of the oficial DICOM json with + * Get the DICOM elements from a 'simple' DICOM tags object. + * The input object is a simplified version of the oficial DICOM json with * tag names instead of keys and direct values (no value property) for * simple tags. See synthetic test data (in tests/dicom) for examples. * - * @param {Object} jsonTags The DICOM - * json tags object. + * @param {Object} simpleTags The 'simple' DICOM + * tags object. * @returns {Object} The DICOM elements. */ -export declare function getElementsFromJSONTags(jsonTags: { +export declare function getElementsFromJSONTags(simpleTags: { [x: string]: any; }): { [x: string]: DataElement; }; +/** + * Get the indices that form a ellpise. + * + * @param {Index} center The ellipse center. + * @param {number[]} radius The 2 ellipse radiuses. + * @param {number[]} dir The 2 ellipse directions. + * @returns {Index[]} The indices of the ellipse. + */ +export declare function getEllipseIndices(center: Index, radius: number[], dir: number[]): Index[]; + +/** + * Get the layer details from a mouse event. + * + * @param {object} event The event to get the layer div id from. Expecting + * an event origininating from a canvas inside a layer HTML div + * with the 'layer' class and id generated with `getLayerDivId`. + * @returns {object} The layer details as {groupDivId, layerIndex, layerId}. + */ +export declare function getLayerDetailsFromEvent(event: object): object; + +/** + * Get the offset of an input mouse event. + * + * @param {object} event The event to get the offset from. + * @returns {Point2D} The 2D point. + */ +export declare function getMousePoint(event: object): Point2D; + /** * Get the name of an image orientation patient. * - * @param {Array} orientation The image orientation patient. - * @returns {string} The orientation name: axial, coronal or sagittal. + * @param {number[]} cosines The image orientation + * patient cosines (6 values). + * @returns {string|undefined} The orientation + * name: axial, coronal or sagittal. */ -export declare function getOrientationName(orientation: any[]): string; +export declare function getOrientationName(cosines: number[]): string | undefined; /** * Get the PixelData Tag. @@ -1210,6 +2372,16 @@ export declare function getOrientationName(orientation: any[]): string; */ export declare function getPixelDataTag(): Tag; +/** + * Get the indices that form a rectangle. + * + * @param {Index} center The rectangle center. + * @param {number[]} size The 2 rectangle sizes. + * @param {number[]} dir The 2 rectangle directions. + * @returns {Index[]} The indices of the rectangle. + */ +export declare function getRectangleIndices(center: Index, size: number[], dir: number[]): Index[]; + /** * Get patient orientation label in the reverse direction. * @@ -1218,6 +2390,16 @@ export declare function getPixelDataTag(): Tag; */ export declare function getReverseOrientation(ori: string): string; +/** + * Get a content item object from a dicom element. + * + * @param {Object} dataElements The dicom element. + * @returns {DicomSRContent} A content item object. + */ +export declare function getSRContent(dataElements: { + [x: string]: DataElement; +}): DicomSRContent; + /** * Split a group-element key used to store DICOM elements. * @@ -1226,6 +2408,14 @@ export declare function getReverseOrientation(ori: string): string; */ export declare function getTagFromKey(key: string): Tag; +/** + * Get the offsets of an input touch event. + * + * @param {object} event The event to get the offset from. + * @returns {Point2D[]} The array of points. + */ +export declare function getTouchPoints(event: object): Point2D[]; + /** * Get the appropriate TypedArray in function of arguments. * @@ -1241,11 +2431,14 @@ export declare function getTypedArray(bitsAllocated: number, pixelRepresentation /** * Get a UID for a DICOM tag. - * Note: Use https://github.com/uuidjs/uuid? * - * @see http://dicom.nema.org/dicom/2013/output/chtml/part05/chapter_9.html - * @see http://dicomiseasy.blogspot.com/2011/12/chapter-4-dicom-objects-in-chapter-3.html - * @see https://stackoverflow.com/questions/46304306/how-to-generate-unique-dicom-uid + * Note: Use {@link https://github.com/uuidjs/uuid}? + * + * Ref: + * - {@link http://dicom.nema.org/medical/dicom/2022a/output/chtml/part05/chapter_9.html}, + * - {@link http://dicomiseasy.blogspot.com/2011/12/chapter-4-dicom-objects-in-chapter-3.html}, + * - {@link https://stackoverflow.com/questions/46304306/how-to-generate-unique-dicom-uid}. + * * @param {string} tagName The input tag. * @returns {string} The corresponding UID. */ @@ -1253,8 +2446,9 @@ export declare function getUID(tagName: string): string; /** * Check that an input buffer includes the DICOM prefix 'DICM' - * after the 128 bytes preamble. - * Ref: [DICOM File Meta]{@link https://dicom.nema.org/dicom/2013/output/chtml/part10/chapter_7.html#sect_7.1} + * after the 128 bytes preamble. + * + * Ref: [DICOM File Meta]{@link https://dicom.nema.org/medical/dicom/2022a/output/chtml/part10/chapter_7.html#sect_7.1}. * * @param {ArrayBuffer} buffer The buffer to check. * @returns {boolean} True if the buffer includes the prefix. @@ -1313,9 +2507,9 @@ declare class Image_2 { /** * @param {Geometry} geometry The geometry of the image. * @param {TypedArray} buffer The image data as a one dimensional buffer. - * @param {Array} [imageUids] An array of Uids indexed to slice number. + * @param {string[]} [imageUids] An array of Uids indexed to slice number. */ - constructor(geometry: Geometry, buffer: Int8Array | Uint8Array | Int16Array | Uint16Array | Int32Array | Uint32Array, imageUids?: any[]); + constructor(geometry: Geometry, buffer: Int8Array | Uint8Array | Int16Array | Uint16Array | Int32Array | Uint32Array, imageUids?: string[]); /** * Get the image UID at a given index. * @@ -1323,6 +2517,27 @@ declare class Image_2 { * @returns {string} The UID. */ getImageUid(index?: Index): string; + /** + * Get the image origin for a image UID. + * + * @param {string} uid The UID. + * @returns {Point3D|undefined} The origin. + */ + getOriginForImageUid(uid: string): Point3D | undefined; + /** + * Check if the image includes an UID. + * + * @param {string} uid The UID. + * @returns {boolean} True if present. + */ + includesImageUid(uid: string): boolean; + /** + * Check if this image includes the input uids. + * + * @param {string[]} uids UIDs to test for presence. + * @returns {boolean} True if all uids are in this image uids. + */ + containsImageUids(uids: string[]): boolean; /** * Get the geometry of the image. * @@ -1332,7 +2547,7 @@ declare class Image_2 { /** * Get the data buffer of the image. * - * @todo dangerous... + * @todo Dangerous... * @returns {TypedArray} The data buffer of the image. */ getBuffer(): Int8Array | Uint8Array | Int16Array | Uint16Array | Int32Array | Uint32Array; @@ -1346,8 +2561,15 @@ declare class Image_2 { * Can window and level be applied to the data? * * @returns {boolean} True if the data is monochrome. + * @deprecated Since v0.33, please use isMonochrome instead. */ canWindowLevel(): boolean; + /** + * Is the data monochrome. + * + * @returns {boolean} True if the data is monochrome. + */ + isMonochrome(): boolean; /** * Can the data be scrolled? * @@ -1368,16 +2590,17 @@ declare class Image_2 { * Get the rescale slope and intercept. * * @param {Index} [index] The index (only needed for non constant rsi). - * @returns {object} The rescale slope and intercept. + * @returns {RescaleSlopeAndIntercept} The rescale slope and intercept. */ - getRescaleSlopeAndIntercept(index?: Index): object; + getRescaleSlopeAndIntercept(index?: Index): RescaleSlopeAndIntercept; /** * Set the rescale slope and intercept. * - * @param {object} inRsi The input rescale slope and intercept. + * @param {RescaleSlopeAndIntercept} inRsi The input rescale + * slope and intercept. * @param {number} [offset] The rsi offset (only needed for non constant rsi). */ - setRescaleSlopeAndIntercept(inRsi: object, offset?: number): void; + setRescaleSlopeAndIntercept(inRsi: RescaleSlopeAndIntercept, offset?: number): void; /** * Are all the RSIs identity (1,0). * @@ -1423,15 +2646,19 @@ declare class Image_2 { /** * Get the meta information of the image. * - * @returns {object} The meta information of the image. + * @returns {Object} The meta information of the image. */ - getMeta(): object; + getMeta(): { + [x: string]: any; + }; /** * Set the meta information of the image. * - * @param {object} rhs The meta information of the image. + * @param {Object} rhs The meta information of the image. */ - setMeta(rhs: object): void; + setMeta(rhs: { + [x: string]: any; + }): void; /** * Get value at offset. Warning: No size check... * @@ -1443,19 +2670,19 @@ declare class Image_2 { * Get the offsets where the buffer equals the input value. * Loops through the whole volume, can get long for big data... * - * @param {number|object} value The value to check. - * @returns {Array} The list of offsets. + * @param {number|RGB} value The value to check. + * @returns {number[]} The list of offsets. */ - getOffsets(value: number | object): any[]; + getOffsets(value: number | RGB): number[]; /** * Check if the input values are in the buffer. * Could loop through the whole volume, can get long for big data... * * @param {Array} values The values to check. - * @returns {Array} A list of booleans for each input value, + * @returns {boolean[]} A list of booleans for each input value, * set to true if the value is present in the buffer. */ - hasValues(values: any[]): any[]; + hasValues(values: any[]): boolean[]; /** * Clone the image. * @@ -1466,6 +2693,7 @@ declare class Image_2 { * Append a slice to the image. * * @param {Image} rhs The slice to append. + * @fires Image#imagegeometrychange */ appendSlice(rhs: Image_2): void; /** @@ -1485,15 +2713,15 @@ declare class Image_2 { /** * Get the data range. * - * @returns {object} The data range. + * @returns {NumberRange} The data range. */ - getDataRange(): object; + getDataRange(): NumberRange; /** * Get the rescaled data range. * - * @returns {object} The rescaled data range. + * @returns {NumberRange} The rescaled data range. */ - getRescaledDataRange(): object; + getRescaledDataRange(): NumberRange; /** * Get the histogram. * @@ -1519,29 +2747,31 @@ declare class Image_2 { /** * Set the inner buffer values at given offsets. * - * @param {Array} offsets List of offsets where to set the data. - * @param {object} value The value to set at the given offsets. - * @fires Image#imagechange + * @param {number[]} offsets List of offsets where to set the data. + * @param {number|RGB} value The value to set at the given offsets. + * @fires Image#imagecontentchange */ - setAtOffsets(offsets: any[], value: object): void; + setAtOffsets(offsets: number[], value: number | RGB): void; /** * Set the inner buffer values at given offsets. * - * @param {Array} offsetsLists List of offset lists where to set the data. - * @param {object} value The value to set at the given offsets. + * @param {number[][]} offsetsLists List of offset lists where + * to set the data. + * @param {RGB} value The value to set at the given offsets. * @returns {Array} A list of objects representing the original values before * replacing them. - * @fires Image#imagechange + * @fires Image#imagecontentchange */ - setAtOffsetsAndGetOriginals(offsetsLists: any[], value: object): any[]; + setAtOffsetsAndGetOriginals(offsetsLists: number[][], value: RGB): any[]; /** * Set the inner buffer values at given offsets. * - * @param {Array} offsetsLists List of offset lists where to set the data. - * @param {object|Array} value The value to set at the given offsets. - * @fires Image#imagechange + * @param {number[][]} offsetsLists List of offset lists + * where to set the data. + * @param {RGB|Array} value The value to set at the given offsets. + * @fires Image#imagecontentchange */ - setAtOffsetsWithIterator(offsetsLists: any[], value: object | any[]): void; + setAtOffsetsWithIterator(offsetsLists: number[][], value: RGB | any[]): void; /** * Get the value of the image at a specific coordinate. * @@ -1613,20 +2843,20 @@ declare class Image_2 { * * Note: Uses raw buffer values. * - * @param {Array} weights The weights of the 2D kernel as a 3x3 matrix. + * @param {number[]} weights The weights of the 2D kernel as a 3x3 matrix. * @returns {Image} The convoluted image. */ - convolute2D(weights: any[]): Image_2; + convolute2D(weights: number[]): Image_2; /** * Convolute an image buffer with a given 2D kernel. * * Note: Uses raw buffer values. * - * @param {Array} weights The weights of the 2D kernel as a 3x3 matrix. + * @param {number[]} weights The weights of the 2D kernel as a 3x3 matrix. * @param {TypedArray} buffer The buffer to convolute. * @param {number} startOffset The index to start at. */ - convoluteBuffer(weights: any[], buffer: Int8Array | Uint8Array | Int16Array | Uint16Array | Int32Array | Uint32Array, startOffset: number): void; + convoluteBuffer(weights: number[], buffer: Int8Array | Uint8Array | Int16Array | Uint16Array | Int32Array | Uint32Array, startOffset: number): void; /** * Transform an image using a specific operator. * WARNING: no size check! @@ -1721,49 +2951,48 @@ export declare class Index { * @returns {Index} The new index. */ getWithNew2D(i: number, j: number): Index; - /** - * Get a string id from the index values in the form of: '#0-1_#1-2'. - * - * @param {number[]} [dims] Optional list of dimensions to use. - * @returns {string} The string id. - */ - toStringId(dims?: number[]): string; #private; } +/** + * Check if two rgb objects are equal. + * + * @param {RGB} c1 The first colour. + * @param {RGB} c2 The second colour. + * @returns {boolean} True if both colour are equal. + */ +export declare function isEqualRgb(c1: RGB, c2: RGB): boolean; + +/** + * CIE LAB value (L: [0, 100], a: [-128, 127], b: [-128, 127]) to + * unsigned int CIE LAB ([0, 65535]). + * + * @param {object} triplet CIE XYZ triplet as {l,a,b} with CIE LAB range. + * @returns {object} CIE LAB triplet as {l,a,b} with unsigned range. + */ +export declare function labToUintLab(triplet: object): object; + /** * Layer group. * - * Display position: {x,y} - * Plane position: Index (access: get(i)) - * (world) Position: Point3D (access: getX, getY, getZ) + * - Display position: {x,y}, + * - Plane position: Index (access: get(i)), + * - (world) Position: Point3D (access: getX, getY, getZ). * * Display -> World: - * planePos = viewLayer.displayToPlanePos(displayPos) - * -> compensate for layer scale and offset - * pos = viewController.getPositionFromPlanePoint(planePos) + * - planePos = viewLayer.displayToPlanePos(displayPos) + * -> compensate for layer scale and offset, + * - pos = viewController.getPositionFromPlanePoint(planePos). * - * World -> display - * planePos = viewController.getOffset3DFromPlaneOffset(pos) - * no need yet for a planePos to displayPos... + * World -> Display: + * - planePos = viewController.getOffset3DFromPlaneOffset(pos) + * no need yet for a planePos to displayPos... */ export declare class LayerGroup { /** * @param {HTMLElement} containerDiv The associated HTML div. */ constructor(containerDiv: HTMLElement); - /** - * Get the target orientation. - * - * @returns {Matrix33} The orientation matrix. - */ - getTargetOrientation(): Matrix33; - /** - * Set the target orientation. - * - * @param {Matrix33} orientation The orientation matrix. - */ - setTargetOrientation(orientation: Matrix33): void; /** * Get the showCrosshair flag. * @@ -1776,6 +3005,12 @@ export declare class LayerGroup { * @param {boolean} flag True to display the crosshair. */ setShowCrosshair(flag: boolean): void; + /** + * Set the imageSmoothing flag value. + * + * @param {boolean} flag True to enable smoothing. + */ + setImageSmoothing(flag: boolean): void; /** * Get the Id of the container div. * @@ -1785,46 +3020,95 @@ export declare class LayerGroup { /** * Get the layer scale. * - * @returns {object} The scale as {x,y,z}. + * @returns {Scalar3D} The scale as {x,y,z}. */ - getScale(): object; + getScale(): Scalar3D; /** * Get the base scale. * - * @returns {object} The scale as {x,y,z}. + * @returns {Scalar3D} The scale as {x,y,z}. */ - getBaseScale(): object; + getBaseScale(): Scalar3D; /** - * Get the added scale: the scale added to the base scale + * Get the added scale: the scale added to the base scale. * - * @returns {object} The scale as {x,y,z}. + * @returns {Scalar3D} The scale as {x,y,z}. */ - getAddedScale(): object; + getAddedScale(): Scalar3D; /** * Get the layer offset. * - * @returns {object} The offset as {x,y,z}. + * @returns {Scalar3D} The offset as {x,y,z}. */ - getOffset(): object; + getOffset(): Scalar3D; /** * Get the number of layers handled by this class. * * @returns {number} The number of layers. */ getNumberOfLayers(): number; + /** + * Check if this layerGroup contains a layer with the input id. + * + * @param {string} id The layer id to look for. + * @returns {boolean} True if this group contains + * a layer with the input id. + */ + includes(id: string): boolean; + /** + * Get a list of view layers according to an input callback function. + * + * @param {Function} [callbackFn] A function that takes + * a ViewLayer as input and returns a boolean. If undefined, + * returns all view layers. + * @returns {ViewLayer[]} The layers that + * satisfy the callbackFn. + */ + getViewLayers(callbackFn?: Function): ViewLayer[]; + /** + * Test if one of the view layers satisfies an input callbackFn. + * + * @param {Function} callbackFn A function that takes + * a ViewLayer as input and returns a boolean. + * @returns {boolean} True if one of the ViewLayers + * satisfies the callbackFn. + */ + someViewLayer(callbackFn: Function): boolean; + /** + * Get a list of draw layers according to an input callback function. + * + * @param {Function} [callbackFn] A function that takes + * a DrawLayer as input and returns a boolean. If undefined, + * returns all draw layers. + * @returns {DrawLayer[]} The layers that + * satisfy the callbackFn. + */ + getDrawLayers(callbackFn?: Function): DrawLayer[]; + /** + * Get the number of view layers handled by this class. + * + * @returns {number} The number of layers. + */ + getNumberOfViewLayers(): number; /** * Get the active image layer. * - * @returns {ViewLayer} The layer. + * @returns {ViewLayer|undefined} The layer. */ - getActiveViewLayer(): ViewLayer; + getActiveViewLayer(): ViewLayer | undefined; /** - * Get the view layers associated to a data index. + * Get the base view layer. * - * @param {number} index The data index. + * @returns {ViewLayer|undefined} The layer. + */ + getBaseViewLayer(): ViewLayer | undefined; + /** + * Get the view layers associated to a data id. + * + * @param {string} dataId The data id. * @returns {ViewLayer[]} The layers. */ - getViewLayersByDataIndex(index: number): ViewLayer[]; + getViewLayersByDataId(dataId: string): ViewLayer[]; /** * Search view layers for equal imae meta data. * @@ -1835,22 +3119,22 @@ export declare class LayerGroup { /** * Get the view layers data indices. * - * @returns {Array} The list of indices. + * @returns {string[]} The list of indices. */ - getViewDataIndices(): any[]; + getViewDataIndices(): string[]; /** * Get the active draw layer. * - * @returns {DrawLayer} The layer. + * @returns {DrawLayer|undefined} The layer. */ - getActiveDrawLayer(): DrawLayer; + getActiveDrawLayer(): DrawLayer | undefined; /** - * Get the draw layers associated to a data index. + * Get the draw layers associated to a data id. * - * @param {number} index The data index. + * @param {string} dataId The data id. * @returns {DrawLayer[]} The layers. */ - getDrawLayersByDataIndex(index: number): DrawLayer[]; + getDrawLayersByDataId(dataId: string): DrawLayer[]; /** * Set the active view layer. * @@ -1858,32 +3142,37 @@ export declare class LayerGroup { */ setActiveViewLayer(index: number): void; /** - * Set the active view layer with a data index. + * Set the active view layer with a data id. * - * @param {number} index The data index. + * @param {string} dataId The data id. */ - setActiveViewLayerByDataIndex(index: number): void; + setActiveViewLayerByDataId(dataId: string): void; /** * Set the active draw layer. * - * @param {number} index The index of the layer to set as active. + * @param {number|undefined} index The index of the layer to set as active + * or undefined to not set any. */ - setActiveDrawLayer(index: number): void; + setActiveDrawLayer(index: number | undefined): void; /** - * Set the active draw layer with a data index. + * Set the active draw layer with a data id. * - * @param {number} index The data index. + * @param {string} dataId The data id. */ - setActiveDrawLayerByDataIndex(index: number): void; + setActiveDrawLayerByDataId(dataId: string): void; /** * Add a view layer. * + * The new layer will be marked as the active view layer. + * * @returns {ViewLayer} The created layer. */ addViewLayer(): ViewLayer; /** * Add a draw layer. * + * The new layer will be marked as the active draw layer. + * * @returns {DrawLayer} The created layer. */ addDrawLayer(): DrawLayer; @@ -1891,6 +3180,53 @@ export declare class LayerGroup { * Empty the layer list. */ empty(): void; + /** + * Remove all layers for a specific data. + * + * @param {string} dataId The data to remove its layers. + */ + removeLayersByDataId(dataId: string): void; + /** + * Remove a layer from this layer group. + * Warning: if current active layer, the index will + * be set to `undefined`. Call one of the setActive + * methods to define the active index. + * + * @param {ViewLayer | DrawLayer} layer The layer to remove. + */ + removeLayer(layer: ViewLayer | DrawLayer): void; + /** + * Displays a tooltip in a temporary `span`. + * Works with css to hide/show the span only on mouse hover. + * + * @param {Point2D} point The update point. + */ + showTooltip(point: Point2D): void; + /** + * Remove the tooltip html div. + */ + removeTooltipDiv(): void; + /** + * Can the input position be set on one of the view layers. + * + * @param {Point} position The input position. + * @returns {boolean} True if one view layer accepts the input position. + */ + isPositionInBounds(position: Point): boolean; + /** + * Can one of the view layers be scrolled. + * + * @returns {boolean} True if one view layer can be scrolled. + */ + canScroll(): boolean; + /** + * Does one of the view layer have more than one slice in the + * given dimension. + * + * @param {number} dim The input dimension. + * @returns {boolean} True if one view layer has more than one slice. + */ + moreThanOne(dim: number): boolean; /** * Update layers (but not the active view layer) to a position change. * @@ -1899,23 +3235,24 @@ export declare class LayerGroup { */ updateLayersToPositionChange: (event: object) => void; /** - * Calculate the fit scale: the scale that fits the largest data. + * Calculate the div to world size ratio needed to fit + * the largest data. * - * @returns {number|undefined} The fit scale. + * @returns {number|undefined} The ratio. */ - calculateFitScale(): number | undefined; + getDivToWorldSizeRatio(): number | undefined; /** - * Set the layer group fit scale. + * Fit to container: set the layers div to world size ratio. * - * @param {number} scaleIn The fit scale. + * @param {number} divToWorldSizeRatio The ratio. */ - setFitScale(scaleIn: number): void; + fitToContainer(divToWorldSizeRatio: number): void; /** - * Get the largest data size. + * Get the largest data world (mm) size. * - * @returns {object|undefined} The largest size as {x,y}. + * @returns {Scalar2D|undefined} The largest size as {x,y}. */ - getMaxSize(): object | undefined; + getMaxWorldSize(): Scalar2D | undefined; /** * Flip all layers along the Z axis without offset compensation. */ @@ -1930,24 +3267,24 @@ export declare class LayerGroup { /** * Set the layers' scale. * - * @param {object} newScale The scale to apply as {x,y,z}. + * @param {Scalar3D} newScale The scale to apply as {x,y,z}. * @param {Point3D} [center] The scale center Point3D. * @fires LayerGroup#zoomchange */ - setScale(newScale: object, center?: Point3D): void; + setScale(newScale: Scalar3D, center?: Point3D): void; /** * Add translation to the layers. * - * @param {object} translation The translation as {x,y,z}. + * @param {Scalar3D} translation The translation as {x,y,z}. */ - addTranslation(translation: object): void; + addTranslation(translation: Scalar3D): void; /** * Set the layers' offset. * - * @param {object} newOffset The offset as {x,y,z}. + * @param {Scalar3D} newOffset The offset as {x,y,z}. * @fires LayerGroup#offsetchange */ - setOffset(newOffset: object): void; + setOffset(newOffset: Scalar3D): void; /** * Reset the stage to its initial scale and no offset. */ @@ -1983,13 +3320,13 @@ export declare class LayerGroup { export declare namespace logger { export namespace levels { - const TRACE: number; - const DEBUG: number; - const INFO: number; - const WARN: number; - const ERROR: number; + let TRACE: number; + let DEBUG: number; + let INFO: number; + let WARN: number; + let ERROR: number; } - const level: number; + let level: number; export function trace(msg: string): void; export function debug(msg: string): void; export function info(msg: string): void; @@ -2006,22 +3343,244 @@ export declare const luts: { [x: string]: ColourMap; }; +/** + * Mask {@link Image} factory. + */ +export declare class MaskFactory { + /** + * Get a warning string if elements are not as expected. + * Created by checkElements. + * + * @returns {string|undefined} The warning. + */ + getWarning(): string | undefined; + /** + * Check dicom elements. Throws an error if not suitable. + * + * @param {Object} _dicomElements The DICOM tags. + * @returns {string|undefined} A possible warning. + */ + checkElements(_dicomElements: { + [x: string]: DataElement; + }): string | undefined; + /** + * Get an {@link Image} object from the read DICOM file. + * + * @param {Object} dataElements The DICOM tags. + * @param {Uint8Array | Int8Array | + * Uint16Array | Int16Array | + * Uint32Array | Int32Array} pixelBuffer The pixel buffer. + * @returns {Image} A new Image. + */ + create(dataElements: { + [x: string]: DataElement; + }, pixelBuffer: Uint8Array | Int8Array | Uint16Array | Int16Array | Uint32Array | Int32Array): Image_2; + /** + * Convert a mask image into a DICOM segmentation object. + * + * @param {Image} image The mask image. + * @param {MaskSegment[]} segments The mask segments. + * @param {Image} sourceImage The source image. + * @param {Object} [extraTags] Optional list of extra tags. + * @returns {Object} A list of dicom elements. + */ + toDicom(image: Image_2, segments: MaskSegment[], sourceImage: Image_2, extraTags?: { + [x: string]: any; + }): { + [x: string]: DataElement; + }; + #private; +} + +/** + * DICOM (mask) segment: item of a SegmentSequence (0062,0002). + * + * Ref: {@link https://dicom.nema.org/medical/dicom/2022a/output/chtml/part03/sect_C.8.20.4.html}. + */ +export declare class MaskSegment { + /** + * @param {number} number The segment number. + * @param {string} label The segment label. + * @param {string} algorithmType The segment number. + */ + constructor(number: number, label: string, algorithmType: string); + /** + * Segment number (0062,0004). + * + * @type {number} + */ + number: number; + /** + * Segment label (0062,0005). + * + * @type {string} + */ + label: string; + /** + * Segment algorithm type (0062,0008). + * + * @type {string} + */ + algorithmType: string; + /** + * Segment algorithm name (0062,0009). + * + * @type {string|undefined} + */ + algorithmName: string | undefined; + /** + * Segment display value as simple value. + * + * @type {number|undefined} + */ + displayValue: number | undefined; + /** + * Segment display value as RGB colour ({r,g,b}). + * + * @type {RGB|undefined} + */ + displayRGBValue: RGB | undefined; + /** + * Segment property code: specific property + * the segment represents (0062,000F). + * + * @type {DicomCode|undefined} + */ + propertyTypeCode: DicomCode | undefined; + /** + * Segment property category code: general category + * of the property the segment represents (0062,0003). + * + * @type {DicomCode|undefined} + */ + propertyCategoryCode: DicomCode | undefined; + /** + * Segment tracking UID (0062,0021). + * + * @type {string|undefined} + */ + trackingUid: string | undefined; + /** + * Segment tracking id: text label for the UID (0062,0020). + * + * @type {string|undefined} + */ + trackingId: string | undefined; +} + +/** + * Mask segment helper: helps handling the segments list, + * but does *NOT* update the associated mask (use special commands + * for that such as DeleteSegmentCommand, ChangeSegmentColourCommand...). + */ +export declare class MaskSegmentHelper { + /** + * @param {Image} mask The associated mask image. + */ + constructor(mask: Image_2); + /** + * Check if a segment is part of the segments list. + * + * @param {number} segmentNumber The segment number. + * @returns {boolean} True if the segment is included. + */ + hasSegment(segmentNumber: number): boolean; + /** + * Get the number of segments of the segmentation. + * + * @returns {number} The number of segments. + */ + getNumberOfSegments(): number; + /** + * Check if a segment is present in a mask image. + * + * @param {number[]} numbers Array of segment numbers. + * @returns {boolean[]} Array of boolean set to true + * if the segment is present in the mask. + */ + maskHasSegments(numbers: number[]): boolean[]; + /** + * Get a segment from the inner segment list. + * + * @param {number} segmentNumber The segment number. + * @returns {MaskSegment|undefined} The segment or undefined if not found. + */ + getSegment(segmentNumber: number): MaskSegment | undefined; + /** + * Add a segment to the segments list. + * + * @param {MaskSegment} segment The segment to add. + */ + addSegment(segment: MaskSegment): void; + /** + * Remove a segment from the segments list. + * + * @param {number} segmentNumber The segment number. + */ + removeSegment(segmentNumber: number): void; + /** + * Update a segment of the segments list. + * + * @param {MaskSegment} segment The segment to update. + */ + updateSegment(segment: MaskSegment): void; + #private; +} + +/** + * Mask segment view helper: handles hidden segments. + */ +export declare class MaskSegmentViewHelper { + /** + * Check if a segment is in the hidden list. + * + * @param {number} segmentNumber The segment number. + * @returns {boolean} True if the segment is in the list. + */ + isHidden(segmentNumber: number): boolean; + /** + * Add a segment to the hidden list. + * + * @param {MaskSegment} segment The segment to add. + */ + addToHidden(segment: MaskSegment): void; + /** + * Remove a segment from the hidden list. + * + * @param {number} segmentNumber The segment number. + */ + removeFromHidden(segmentNumber: number): void; + /** + * @callback alphaFn@callback alphaFn + * @param {number[]|number} value The pixel value. + * @param {number} index The values' index. + * @returns {number} The opacity of the input value. + */ + /** + * Get the alpha function to apply hidden colors. + * + * @returns {alphaFn} The corresponding alpha function. + */ + getAlphaFunc(): (value: number[] | number, index: number) => number; + #private; +} + /** * Immutable 3x3 Matrix. */ export declare class Matrix33 { /** - * @param {Array} values row-major ordered 9 values. + * @param {number[]} values Row-major ordered 9 values. */ - constructor(values: any[]); + constructor(values: number[]); /** * Get a value of the matrix. * * @param {number} row The row at wich to get the value. * @param {number} col The column at wich to get the value. - * @returns {number} The value at the position. + * @returns {number|undefined} The value at the position. */ - get(row: number, col: number): number; + get(row: number, col: number): number | undefined; /** * Get the inverse of this matrix. * @@ -2060,64 +3619,290 @@ export declare class Matrix33 { /** * Multiply this matrix by a 3D array. * - * @param {Array} array3D The input 3D array. - * @returns {Array} The result 3D array. + * @param {number[]} array3D The input 3D array. + * @returns {number[]} The result 3D array. + */ + multiplyArray3D(array3D: number[]): number[]; + /** + * Multiply this matrix by a 3D vector. + * + * @param {Vector3D} vector3D The input 3D vector. + * @returns {Vector3D} The result 3D vector. + */ + multiplyVector3D(vector3D: Vector3D): Vector3D; + /** + * Multiply this matrix by a 3D point. + * + * @param {Point3D} point3D The input 3D point. + * @returns {Point3D} The result 3D point. + */ + multiplyPoint3D(point3D: Point3D): Point3D; + /** + * Multiply this matrix by a 3D index. + * + * @param {Index} index3D The input 3D index. + * @returns {Index} The result 3D index. + */ + multiplyIndex3D(index3D: Index): Index; + /** + * Get the index of the maximum in absolute value of a row. + * + * @param {number} row The row to get the maximum from. + * @returns {object} The {value,index} of the maximum. + */ + getRowAbsMax(row: number): object; + /** + * Get the index of the maximum in absolute value of a column. + * + * @param {number} col The column to get the maximum from. + * @returns {object} The {value,index} of the maximum. + */ + getColAbsMax(col: number): object; + /** + * Get this matrix with only zero and +/- ones instead of the maximum. + * + * @returns {Matrix33} The simplified matrix. + */ + asOneAndZeros(): Matrix33; + /** + * Get the third column direction index of an orientation matrix. + * + * @returns {number} The index of the absolute maximum of the last column. + */ + getThirdColMajorDirection(): number; + #private; +} + +/** + * Number range. + */ +export declare class NumberRange { + /** + * @param {number} min The minimum. + * @param {number} max The maximum. + */ + constructor(min: number, max: number); + /** + * @type {number} + */ + min: number; + /** + * @type {number} + */ + max: number; +} + +export declare namespace Orientation { + let Axial: string; + let Coronal: string; + let Sagittal: string; +} + +/** + * DICOM Header overlay info. + */ +export declare class OverlayData { + /** + * @param {App} app The associated application. + * @param {string} dataId The associated data id. + * @param {object} configs The overlay config. + */ + constructor(app: App, dataId: string, configs: object); + /** + * Reset the data. + */ + reset(): void; + /** + * Handle a new loaded item event. + * + * @param {object} data The item meta data. + */ + addItemMeta(data: object): void; + /** + * Is this class listening to app events. + * + * @returns {boolean} True is listening to app events. + */ + isListening(): boolean; + /** + * Toggle info listeners. + */ + addAppListeners(): void; + /** + * Toggle info listeners. + */ + removeAppListeners(): void; + /** + * Add an event listener to this class. + * + * @param {string} type The event type. + * @param {object} callback The method associated with the provided + * event type, will be called with the fired event. + */ + addEventListener(type: string, callback: object): void; + /** + * Remove an event listener from this class. + * + * @param {string} type The event type. + * @param {object} callback The method associated with the provided + * event type. + */ + removeEventListener(type: string, callback: object): void; + #private; +} + +/** + * Plane geometry helper. + */ +export declare class PlaneHelper { + /** + * @param {Geometry} imageGeometry The image geometry. + * @param {Matrix33} viewOrientation The view orientation. + */ + constructor(imageGeometry: Geometry, viewOrientation: Matrix33); + /** + * Get the view orientation. + * + * @returns {Matrix33} The orientation matrix. + */ + getViewOrientation(): Matrix33; + /** + * Get the target orientation. + * + * @returns {Matrix33} The orientation matrix. + */ + getTargetOrientation(): Matrix33; + /** + * Get a 3D offset from a plane one. + * + * @param {Scalar2D} offset2D The plane offset as {x,y}. + * @returns {Vector3D} The 3D world offset. + */ + getOffset3DFromPlaneOffset(offset2D: Scalar2D): Vector3D; + /** + * Get a plane offset from a 3D one. + * + * @param {Scalar3D} offset3D The 3D offset as {x,y,z}. + * @returns {Scalar2D} The plane offset as {x,y}. + */ + getPlaneOffsetFromOffset3D(offset3D: Scalar3D): Scalar2D; + /** + * Orient an input vector from real to target space. + * + * @param {Vector3D} vector The input vector. + * @returns {Vector3D} The oriented vector. + */ + getTargetOrientedVector3D(vector: Vector3D): Vector3D; + /** + * De-orient an input vector from target to real space. + * + * @param {Vector3D} planeVector The input vector. + * @returns {Vector3D} The de-orienteded vector. + */ + getTargetDeOrientedVector3D(planeVector: Vector3D): Vector3D; + /** + * De-orient an input point from target to real space. + * + * @param {Point3D} planePoint The input point. + * @returns {Point3D} The de-orienteded point. + */ + getTargetDeOrientedPoint3D(planePoint: Point3D): Point3D; + /** + * Orient an input vector from target to image space. + * + * @param {Vector3D} planeVector The input vector. + * @returns {Vector3D} The orienteded vector. + */ + getImageOrientedVector3D(planeVector: Vector3D): Vector3D; + /** + * Orient an input point from target to image space. + * + * @param {Point3D} planePoint The input vector. + * @returns {Point3D} The orienteded vector. + */ + getImageOrientedPoint3D(planePoint: Point3D): Point3D; + /** + * De-orient an input vector from image to target space. + * + * @param {Vector3D} vector The input vector. + * @returns {Vector3D} The de-orienteded vector. + */ + getImageDeOrientedVector3D(vector: Vector3D): Vector3D; + /** + * De-orient an input point from image to target space. + * + * @param {Point3D} point The input point. + * @returns {Point3D} The de-orienteded point. + */ + getImageDeOrientedPoint3D(point: Point3D): Point3D; + /** + * Get a world position from a 2D plane position. + * + * @param {Point2D} point2D The plane point. + * @param {number} k The slice index. + * @returns {Point3D} The world position. + */ + getPositionFromPlanePoint(point2D: Point2D, k: number): Point3D; + /** + * Get a 2D plane position from a world position. + * + * @param {Point} point The world position. + * @returns {Point3D} The plane point. */ - multiplyArray3D(array3D: any[]): any[]; + getPlanePointFromPosition(point: Point): Point3D; /** - * Multiply this matrix by a 3D vector. + * Get the cosines of this plane. * - * @param {Vector3D} vector3D The input 3D vector. - * @returns {Vector3D} The result 3D vector. + * @returns {number[]} The 2 cosines vectors (3D). */ - multiplyVector3D(vector3D: Vector3D): Vector3D; + getCosines(): number[]; /** - * Multiply this matrix by a 3D point. + * Get a list of points that define the plane at input position, + * given this classes orientation. * - * @param {Point3D} point3D The input 3D point. - * @returns {Point3D} The result 3D point. + * @param {Point} position The position. + * @returns {Point3D[]} An origin and 2 cosines vectors. */ - multiplyPoint3D(point3D: Point3D): Point3D; + getPlanePoints(position: Point): Point3D[]; /** - * Multiply this matrix by a 3D index. + * Image world to index. * - * @param {Index} index3D The input 3D index. - * @returns {Index} The result 3D index. + * @param {Point} point The input point. + * @returns {Index} The corresponding index. */ - multiplyIndex3D(index3D: Index): Index; + worldToIndex(point: Point): Index; /** - * Get the index of the maximum in absolute value of a row. + * Is this view in the same orientation as the image aquisition. * - * @param {number} row The row to get the maximum from. - * @returns {object} The {value,index} of the maximum. + * @returns {boolean} True if in aquisition plane. */ - getRowAbsMax(row: number): object; + isAquisitionOrientation(): boolean; /** - * Get the index of the maximum in absolute value of a column. + * Reorder values to follow target orientation. * - * @param {number} col The column to get the maximum from. - * @returns {object} The {value,index} of the maximum. + * @param {Scalar3D} values Values as {x,y,z}. + * @returns {Scalar3D} Reoriented values as {x,y,z}. */ - getColAbsMax(col: number): object; + getTargetOrientedPositiveXYZ(values: Scalar3D): Scalar3D; /** - * Get this matrix with only zero and +/- ones instead of the maximum, + * Get the (view) scroll dimension index. * - * @returns {Matrix33} The simplified matrix. + * @returns {number} The index. */ - asOneAndZeros(): Matrix33; + getScrollIndex(): number; /** - * Get the third column direction index of an orientation matrix. + * Get the native (image) scroll dimension index. * - * @returns {number} The index of the absolute maximum of the last column. + * @returns {number} The index. */ - getThirdColMajorDirection(): number; + getNativeScrollIndex(): number; #private; } /** * Immutable point. * Warning: the input array is NOT cloned, modifying it will - * modify the index values. + * modify the point values. */ export declare class Point { /** @@ -2125,26 +3910,26 @@ export declare class Point { */ constructor(values: number[]); /** - * Get the index value at the given array index. + * Get the point value at the given array index. * * @param {number} i The index to get. * @returns {number} The value. */ get(i: number): number; /** - * Get the length of the index. + * Get the length of the point. * * @returns {number} The length. */ length(): number; /** - * Get a string representation of the Index. + * Get a string representation of the point. * - * @returns {string} The Index as a string. + * @returns {string} The point as a string. */ toString(): string; /** - * Get the values of this index. + * Get the values of this point. * * @returns {number[]} The array of values. */ @@ -2214,6 +3999,18 @@ export declare class Point2D { * @returns {number} The Y position of the point. */ getY(): number; + /** + * Get the values of this point. + * + * @returns {number[]} The array of values. + */ + getValues(): number[]; + /** + * Get the centroid of the point, ie itself. + * + * @returns {Point2D} The centroid point. + */ + getCentroid(): Point2D; /** * Check for Point2D equality. * @@ -2231,15 +4028,9 @@ export declare class Point2D { * Get the distance to another Point2D. * * @param {Point2D} point2D The input point. - * @returns {number} The distance to the input point. + * @returns {number} Ths distance to the input point. */ getDistance(point2D: Point2D): number; - /** - * Round a Point2D. - * - * @returns {Point2D} The rounded point. - */ - getRound(): Point2D; #private; } @@ -2271,6 +4062,12 @@ export declare class Point3D { * @returns {number} The Z position of the point. */ getZ(): number; + /** + * Get the values of this point. + * + * @returns {number[]} The array of values. + */ + getValues(): number[]; /** * Check for Point3D equality. * @@ -2300,6 +4097,13 @@ export declare class Point3D { * @returns {number} Ths distance to the input point. */ getDistance(point3D: Point3D): number; + /** + * Get the closest point to this in a Point3D list. + * + * @param {Point3D[]} pointList The list to check. + * @returns {number} The index of the closest point in the input list. + */ + getClosest(pointList: Point3D[]): number; /** * Get the difference to another Point3D. * @@ -2312,9 +4116,11 @@ export declare class Point3D { /** * Round a float number to a given precision. - * Inspired from https://stackoverflow.com/a/49729715/3639892. + * + * Inspired from {@link https://stackoverflow.com/a/49729715/3639892}. + * * Can be a solution to not have trailing zero as when - * using toFixed or toPrecision. + * using toFixed or toPrecision. * '+number.toFixed(precision)' does not pass all the tests... * * @param {number} number The number to round. @@ -2324,50 +4130,138 @@ export declare class Point3D { export declare function precisionRound(number: number, precision: number): number; /** - * Rescale LUT class. - * Typically converts from integer to float. + * Protractor shape: 3 points from which to calculate an angle. */ -export declare class RescaleLut { +export declare class Protractor { /** - * @param {RescaleSlopeAndIntercept} rsi The rescale slope and intercept. - * @param {number} bitsStored The number of bits used to store the data. + * @param {Point2D[]} points The list of Point2D that make + * the protractor. */ - constructor(rsi: RescaleSlopeAndIntercept, bitsStored: number); + constructor(points: Point2D[]); /** - * Get the Rescale Slope and Intercept (RSI). + * Get a point of the list. * - * @returns {RescaleSlopeAndIntercept} The rescale slope and intercept object. + * @param {number} index The index of the point + * to get (beware, no size check). + * @returns {Point2D|undefined} The Point2D at the given index. */ - getRSI(): RescaleSlopeAndIntercept; + getPoint(index: number): Point2D | undefined; /** - * Is the lut ready to use or not? If not, the user must - * call 'initialise'. + * Get the length of the path (should be 3). * - * @returns {boolean} True if the lut is ready to use. + * @returns {number} The length of the path. */ - isReady(): boolean; + getLength(): number; /** - * Initialise the LUT. + * Get the centroid of the protractor. + * + * @returns {Point2D} THe centroid point. */ - initialise(): void; + getCentroid(): Point2D; /** - * Get the length of the LUT array. + * Quantify a path according to view information. * - * @returns {number} The length of the LUT array. + * @param {ViewController} _viewController The associated view controller. + * @param {string[]} _flags A list of stat values to calculate. + * @returns {object} A quantification object. */ - getLength(): number; + quantify(_viewController: ViewController, _flags: string[]): object; + #private; +} + +/** + * Rectangle shape. + */ +export declare class Rectangle { + /** + * @param {Point2D} begin A Point2D representing the beginning + * of the rectangle. + * @param {Point2D} end A Point2D representing the end + * of the rectangle. + */ + constructor(begin: Point2D, end: Point2D); + /** + * Get the begin point of the rectangle. + * + * @returns {Point2D} The begin point of the rectangle. + */ + getBegin(): Point2D; + /** + * Get the end point of the rectangle. + * + * @returns {Point2D} The end point of the rectangle. + */ + getEnd(): Point2D; + /** + * Check for equality. + * + * @param {Rectangle} rhs The object to compare to. + * @returns {boolean} True if both objects are equal. + */ + equals(rhs: Rectangle): boolean; + /** + * Get the surface of the rectangle. + * + * @returns {number} The surface of the rectangle. + */ + getSurface(): number; + /** + * Get the surface of the rectangle according to a spacing. + * + * @param {Scalar2D} spacing2D The 2D spacing. + * @returns {number} The surface of the rectangle multiplied by the given + * spacing or null for null spacings. + */ + getWorldSurface(spacing2D: Scalar2D): number; + /** + * Get the real width of the rectangle. + * + * @returns {number} The real width of the rectangle. + */ + getRealWidth(): number; + /** + * Get the real height of the rectangle. + * + * @returns {number} The real height of the rectangle. + */ + getRealHeight(): number; + /** + * Get the width of the rectangle. + * + * @returns {number} The width of the rectangle. + */ + getWidth(): number; + /** + * Get the height of the rectangle. + * + * @returns {number} The height of the rectangle. + */ + getHeight(): number; + /** + * Get the rounded limits of the rectangle. + * + * @returns {object} The rounded limits as {min, max} (Point2D). + */ + getRound(): object; /** - * Get the value of the LUT at the given offset. + * Get the centroid of the rectangle. * - * @param {number} offset The input offset in [0,2^bitsStored] range. - * @returns {number} The float32 value of the LUT at the given offset. + * @returns {Point2D} The centroid point. */ - getValue(offset: number): number; + getCentroid(): Point2D; + /** + * Quantify a rectangle according to view information. + * + * @param {ViewController} viewController The associated view controller. + * @param {string[]} flags A list of stat values to calculate. + * @returns {object} A quantification object. + */ + quantify(viewController: ViewController, flags: string[]): object; #private; } /** - * Rescale Slope and Intercept + * Rescale Slope and Intercept. */ export declare class RescaleSlopeAndIntercept { /** @@ -2401,12 +4295,6 @@ export declare class RescaleSlopeAndIntercept { * @returns {boolean} True if both RSI are equal. */ equals(rhs: RescaleSlopeAndIntercept): boolean; - /** - * Get a string representation of the RSI. - * - * @returns {string} The RSI as a string. - */ - toString(): string; /** * Is this RSI an ID RSI. * @@ -2416,6 +4304,148 @@ export declare class RescaleSlopeAndIntercept { #private; } +/** + * RGB colour class. + */ +export declare class RGB { + /** + * @param {number} r Red component. + * @param {number} g Green component. + * @param {number} b Blue component. + */ + constructor(r: number, g: number, b: number); + /** + * Red component. + * + * @type {number} + */ + r: number; + /** + * Green component. + * + * @type {number} + */ + g: number; + /** + * Blue component. + * + * @type {number} + */ + b: number; +} + +/** + * Region Of Interest shape. + * Note: should be a closed path. + */ +export declare class ROI { + /** + * @param {Point2D[]} [points] Optional initial point list. + */ + constructor(points?: Point2D[]); + /** + * Get a point of the list at a given index. + * + * @param {number} index The index of the point to get + * (beware, no size check). + * @returns {Point2D|undefined} The Point2D at the given index. + */ + getPoint(index: number): Point2D | undefined; + /** + * Get the point list. + * + * @returns {Point2D[]} The list. + */ + getPoints(): Point2D[]; + /** + * Get the length of the point list. + * + * @returns {number} The length of the point list. + */ + getLength(): number; + /** + * Add a point to the ROI. + * + * @param {Point2D} point The Point2D to add. + */ + addPoint(point: Point2D): void; + /** + * Add points to the ROI. + * + * @param {Point2D[]} rhs The array of POints2D to add. + */ + addPoints(rhs: Point2D[]): void; + /** + * Get the centroid of the roi. Only valid for + * a non-self-intersecting closed polygon. + * Ref: {@link https://en.wikipedia.org/wiki/Centroid#Of_a_polygon}. + * + * @returns {Point2D} The centroid point. + */ + getCentroid(): Point2D; + #private; +} + +/** + * Mutable 2D scalar ({x,y}). + */ +export declare class Scalar2D { + /** + * X value. + * + * @type {number} + */ + x: number; + /** + * Y value. + * + * @type {number} + */ + y: number; +} + +/** + * Mutable 3D scalar ({x,y,z}). + */ +export declare class Scalar3D { + /** + * X value. + * + * @type {number} + */ + x: number; + /** + * Y value. + * + * @type {number} + */ + y: number; + /** + * Z value. + * + * @type {number} + */ + z: number; +} + +/** + * Scroll wheel class: provides a wheel event handler + * that scroll the corresponding data. + */ +export declare class ScrollWheel { + /** + * @param {App} app The associated application. + */ + constructor(app: App); + /** + * Handle mouse wheel event. + * + * @param {WheelEvent} event The mouse wheel event. + */ + wheel(event: WheelEvent): void; + #private; +} + /** * Immutable Size class. * Warning: the input array is NOT cloned, modifying it will @@ -2423,9 +4453,9 @@ export declare class RescaleSlopeAndIntercept { */ export declare class Size { /** - * @param {Array} values The size values. + * @param {number[]} values The size values. */ - constructor(values: any[]); + constructor(values: number[]); /** * Get the size value at the given array index. * @@ -2448,9 +4478,9 @@ export declare class Size { /** * Get the values of this index. * - * @returns {Array} The array of values. + * @returns {number[]} The array of values. */ - getValues(): any[]; + getValues(): number[]; /** * Check if a dimension exists and has more than one element. * @@ -2499,10 +4529,10 @@ export declare class Size { * Check that an index is within bounds. * * @param {Index} index The index to check. - * @param {Array} dirs Optional list of directions to check. + * @param {number[]} dirs Optional list of directions to check. * @returns {boolean} True if the given coordinates are within bounds. */ - isInBounds(index: Index, dirs: any[]): boolean; + isInBounds(index: Index, dirs: number[]): boolean; /** * Convert an index to an offset in memory. * @@ -2521,9 +4551,9 @@ export declare class Size { /** * Get the 2D base of this size. * - * @returns {object} The 2D base [0,1] as {x,y}. + * @returns {Scalar2D} The 2D base [0,1] as {x,y}. */ - get2D(): object; + get2D(): Scalar2D; #private; } @@ -2534,9 +4564,9 @@ export declare class Size { */ export declare class Spacing { /** - * @param {Array} values The spacing values. + * @param {number[]} values The spacing values. */ - constructor(values: any[]); + constructor(values: number[]); /** * Get the spacing value at the given array index. * @@ -2559,9 +4589,9 @@ export declare class Spacing { /** * Get the values of this spacing. * - * @returns {Array} The array of values. + * @returns {number[]} The array of values. */ - getValues(): any[]; + getValues(): number[]; /** * Check for equality. * @@ -2572,12 +4602,20 @@ export declare class Spacing { /** * Get the 2D base of this size. * - * @returns {object} The 2D base [col,row] as {x,y}. + * @returns {Scalar2D} The 2D base [col,row] as {x,y}. */ - get2D(): object; + get2D(): Scalar2D; #private; } +/** + * Convert sRGB to CIE LAB (standard illuminant D65). + * + * @param {RGB} triplet 'sRGB' triplet as {r,g,b}. + * @returns {object} CIE LAB triplet as {l,a,b}. + */ +export declare function srgbToCielab(triplet: RGB): object; + /** * Immutable tag. */ @@ -2634,18 +4672,13 @@ export declare class Tag { isWithVR(): boolean; /** * Is the tag group a private tag group ? - * see: http://dicom.nema.org/medical/dicom/2015a/output/html/part05.html#sect_7.8 + * + * See: {@link http://dicom.nema.org/medical/dicom/2022a/output/html/part05.html#sect_7.8}. * * @returns {boolean} True if the tag group is private, * ie if its group is an odd number. */ isPrivate(): boolean; - /** - * Get the tag info from the dicom dictionary. - * - * @returns {Array|undefined} The info as [vr, multiplicity, name]. - */ - getInfoFromDictionary(): any[] | undefined; /** * Get the tag Value Representation (VR) from the dicom dictionary. * @@ -2690,6 +4723,13 @@ export declare class ToolboxController { * Initialise. */ init(): void; + /** + * Enable or disable shortcuts. The 'init' methods enables shortcuts + * by default. Call this method after init to disable shortcuts. + * + * @param {boolean} flag True to enable shortcuts. + */ + enableShortcuts(flag: boolean): void; /** * Get the tool list. * @@ -2732,30 +4772,137 @@ export declare class ToolboxController { /** * Listen to layer interaction events. * - * @param {object} layer The layer to listen to. - * @param {string} layerGroupDivId The associated layer group div id. + * @param {LayerGroup} layerGroup The associated layer group. + * @param {ViewLayer|DrawLayer} layer The layer to listen to. */ - bindLayer(layer: object, layerGroupDivId: string): void; + bindLayerGroup(layerGroup: LayerGroup, layer: ViewLayer | DrawLayer): void; #private; } /** * Tool configuration. */ -export declare class ToolConfig { - /** - * @param {string[]} [options] Optional tool options. - */ - constructor(options?: string[]); - /** - * Optional tool options. - * For Draw: list of shape names. - * For Filter: list of filter names. - * - * @type {string[]|undefined} - */ - options: string[] | undefined; -} +export declare class ToolConfig { + /** + * @param {string[]} [options] Optional tool options. + */ + constructor(options?: string[]); + /** + * Optional tool options. + * For Draw: list of shape names. + * For Filter: list of filter names. + * + * @type {string[]|undefined} + */ + options: string[] | undefined; +} + +/** + * List of client provided tools to be added to + * the default ones. + * + * @example + * // custom tool + * class AlertTool { + * mousedown() {alert('AlertTool mousedown');} + * init() {} + * activate() {} + * } + * // pass it to dwv tool list + * dwv.toolList['Alert'] = AlertTool; + * // create the dwv app + * const app = new dwv.App(); + * // initialise + * const viewConfig0 = new dwv.ViewConfig('layerGroup0'); + * const viewConfigs = {'*': [viewConfig0]}; + * const options = new dwv.AppOptions(viewConfigs); + * options.tools = {Alert: {}}; + * app.init(options); + * // activate tool + * app.addEventListener('load', function () { + * app.setTool('Alert'); + * }); + * // load dicom data + * app.loadURLs([ + * 'https://raw.githubusercontent.com/ivmartel/dwv/master/tests/data/bbmri-53323851.dcm' + * ]); + * + * @type {Object} + */ +export declare const toolList: { + [x: string]: any; +}; + +/** + * List of client provided tool options to be added to + * the default ones. + * + * @example + * // custom factory + * class LoveFactory { + * getName() {return 'love';} + * static supports(mathShape) {return mathShape instanceof ROI;} + * getNPoints() {return 1;} + * getTimeout() {return 0;} + * setAnnotationMathShape(annotation, points) { + * const px = points[0].getX(); + * const py = points[0].getY(); + * annotation.mathShape = new dwv.ROI([ + * new dwv.Point2D(px+15,py), new dwv.Point2D(px+10,py-10), + * new dwv.Point2D(px,py), new dwv.Point2D(px-10,py-10), + * new dwv.Point2D(px-15,py), new dwv.Point2D(px,py+20) + * ]); + * annotation.getFactory = function () {return new LoveFactory();} + * } + * createShapeGroup(annotation, style) { + * const roi = annotation.mathShape; + * // konva line + * const arr = []; + * for (let i = 0; i < roi.getLength(); ++i) { + * arr.push(roi.getPoint(i).getX()); + * arr.push(roi.getPoint(i).getY()); + * } + * const shape = new Konva.Line({ + * name: 'shape', points: arr, + * stroke: 'red', strokeWidth: 2, + * closed: true + * }); + * // konva group + * const group = new Konva.Group(); + * group.name('love-group'); + * group.visible(true); + * group.id(annotation.id); + * group.add(shape); + * return group; + * } + * } + * // pass it to dwv option list + * dwv.toolOptions['draw'] = {LoveFactory}; + * // create the dwv app + * const app = new dwv.App(); + * // initialise + * const viewConfig0 = new dwv.ViewConfig('layerGroup0'); + * const viewConfigs = {'*': [viewConfig0]}; + * const options = new dwv.AppOptions(viewConfigs); + * options.tools = {Draw: {options: ['Love']}}; + * app.init(options); + * // activate tool + * app.addEventListener('load', function () { + * app.setTool('Draw'); + * app.setToolFeatures({shapeName: 'Love'}); + * }); + * // load dicom data + * app.loadURLs([ + * 'https://raw.githubusercontent.com/ivmartel/dwv/master/tests/data/bbmri-53323851.dcm' + * ]); + * + * @type {Object>} + */ +export declare const toolOptions: { + [x: string]: { + [x: string]: any; + }; +}; /** * Immutable 3D vector. @@ -2809,7 +4956,8 @@ export declare class Vector3D { * vector that is perpendicular to both a and b. * If both vectors are parallel, the cross product is a zero vector. * - * @see https://en.wikipedia.org/wiki/Cross_product + * Ref: {@link https://en.wikipedia.org/wiki/Cross_product}. + * * @param {Vector3D} vector3D The input vector. * @returns {Vector3D} The result vector. */ @@ -2817,11 +4965,19 @@ export declare class Vector3D { /** * Get the dot product with another Vector3D. * - * @see https://en.wikipedia.org/wiki/Dot_product + * Ref: {@link https://en.wikipedia.org/wiki/Dot_product}. + * * @param {Vector3D} vector3D The input vector. * @returns {number} The dot product. */ dotProduct(vector3D: Vector3D): number; + /** + * Is this vector codirectional to an input one. + * + * @param {Vector3D} vector3D The vector to test. + * @returns {boolean} True if codirectional, false is opposite. + */ + isCodirectional(vector3D: Vector3D): boolean; #private; } @@ -2896,7 +5052,7 @@ export declare class View { */ init(): void; /** - * Set the initial index to 0. + * Set the initial index to the middle position. */ setInitialIndex(): void; /** @@ -2908,39 +5064,23 @@ export declare class View { getPlaybackMilliseconds(recommendedDisplayFrameRate: number): number; /** * @callback alphaFn@callback alphaFn - * @param {object} value The pixel value. - * @param {object} index The values' index. - * @returns {number} The value to display. + * @param {number[]|number} value The pixel value. + * @param {number} index The values' index. + * @returns {number} The opacity of the input value. */ /** * Get the alpha function. * * @returns {alphaFn} The function. */ - getAlphaFunction(): (value: object, index: object) => number; + getAlphaFunction(): (value: number[] | number, index: number) => number; /** * Set alpha function. * * @param {alphaFn} func The function. * @fires View#alphafuncchange */ - setAlphaFunction(func: (value: object, index: object) => number): void; - /** - * Get the window LUT of the image. - * Warning: can be undefined in no window/level was set. - * - * @param {object} [rsi] Optional image rsi, will take the one of the - * current slice otherwise. - * @returns {WindowLut} The window LUT of the image. - * @fires View#wlchange - */ - getCurrentWindowLut(rsi?: object): WindowLut; - /** - * Add the window LUT to the list. - * - * @param {WindowLut} wlut The window LUT of the image. - */ - addWindowLut(wlut: WindowLut): void; + setAlphaFunction(func: (value: number[] | number, index: number) => number): void; /** * Get the window presets. * @@ -2950,40 +5090,40 @@ export declare class View { /** * Get the window presets names. * - * @returns {object} The list of window presets names. + * @returns {string[]} The list of window presets names. */ - getWindowPresetsNames(): object; + getWindowPresetsNames(): string[]; /** * Set the window presets. * * @param {object} presets The window presets. */ setWindowPresets(presets: object): void; - /** - * Set the default colour map. - * - * @param {ColourMap} map The colour map. - */ - setDefaultColourMap(map: ColourMap): void; /** * Add window presets to the existing ones. * * @param {object} presets The window presets. */ addWindowPresets(presets: object): void; + /** + * Get the current window level preset name. + * + * @returns {string} The preset name. + */ + getCurrentWindowPresetName(): string; /** * Get the colour map of the image. * - * @returns {ColourMap} The colour map of the image. + * @returns {string} The colour map name. */ - getColourMap(): ColourMap; + getColourMap(): string; /** * Set the colour map of the image. * - * @param {ColourMap} map The colour map of the image. - * @fires View#colourchange + * @param {string} name The colour map name. + * @fires View#colourmapchange */ - setColourMap(map: ColourMap): void; + setColourMap(name: string): void; /** * Get the current position. * @@ -2997,28 +5137,49 @@ export declare class View { */ getCurrentIndex(): Index; /** - * Check is the provided position can be set. + * Get the SOP image UID of the current image. * - * @param {Point} position The position. + * @returns {string} The UID. + */ + getCurrentImageUid(): string; + /** + * Get the image origin for a image UID. + * + * @param {string} uid The UID. + * @returns {Point3D|undefined} The origin. + */ + getOriginForImageUid(uid: string): Point3D | undefined; + /** + * Check if the image includes an UID. + * + * @param {string} uid The UID. + * @returns {boolean} True if present. + */ + includesImageUid(uid: string): boolean; + /** + * Check if the current position (default) or + * the provided position is in bounds. + * + * @param {Point} [position] Optional position. * @returns {boolean} True is the position is in bounds. */ - canSetPosition(position: Point): boolean; + isPositionInBounds(position?: Point): boolean; /** - * Get the origin at a given position. + * Get the first origin or at a given position. * - * @param {Point} position The position. - * @returns {Point} The origin. + * @param {Point} [position] Optional position. + * @returns {Point3D} The origin. */ - getOrigin(position: Point): Point; + getOrigin(position?: Point): Point3D; /** * Set the current position. * * @param {Point} position The new position. - * @param {boolean} silent Flag to fire event or not. - * @returns {boolean} False if not in bounds + * @param {boolean} [silent] Flag to fire event or not. + * @returns {boolean} False if not in bounds. * @fires View#positionchange */ - setCurrentPosition(position: Point, silent: boolean): boolean; + setCurrentPosition(position: Point, silent?: boolean): boolean; /** * Set the current index. * @@ -3031,14 +5192,19 @@ export declare class View { /** * Set the view window/level. * - * @param {number} center The window center. - * @param {number} width The window width. + * @param {WindowLevel} wl The window and level. * @param {string} [name] Associated preset name, defaults to 'manual'. * Warning: uses the latest set rescale LUT or the default linear one. * @param {boolean} [silent] Flag to launch events with skipGenerate. * @fires View#wlchange */ - setWindowLevel(center: number, width: number, name?: string, silent?: boolean): void; + setWindowLevel(wl: WindowLevel, name?: string, silent?: boolean): void; + /** + * Get the window/level. + * + * @returns {WindowLevel} The window and level. + */ + getWindowLevel(): WindowLevel; /** * Set the window level to the preset with the input name. * @@ -3073,9 +5239,9 @@ export declare class View { * Get the image window/level that covers the full data range. * Warning: uses the latest set rescale LUT or the default linear one. * - * @returns {WindowCenterAndWidth} A min/max window level. + * @returns {WindowLevel} A min/max window level. */ - getWindowLevelMinMax(): WindowCenterAndWidth; + getWindowLevelMinMax(): WindowLevel; /** * Set the image window/level to cover the full data range. * Warning: uses the latest set rescale LUT or the default linear one. @@ -3089,22 +5255,6 @@ export declare class View { * otherwise generates at current index. */ generateImageData(data: ImageData, index: Index): void; - /** - * Increment the provided dimension. - * - * @param {number} dim The dimension to increment. - * @param {boolean} silent Do not send event. - * @returns {boolean} False if not in bounds. - */ - incrementIndex(dim: number, silent: boolean): boolean; - /** - * Decrement the provided dimension. - * - * @param {number} dim The dimension to increment. - * @param {boolean} silent Do not send event. - * @returns {boolean} False if not in bounds. - */ - decrementIndex(dim: number, silent: boolean): boolean; /** * Get the scroll dimension index. * @@ -3112,19 +5262,11 @@ export declare class View { */ getScrollIndex(): number; /** - * Decrement the scroll dimension index. - * - * @param {boolean} silent Do not send event. - * @returns {boolean} False if not in bounds. - */ - decrementScrollIndex(silent: boolean): boolean; - /** - * Increment the scroll dimension index. + * Is this view in the same orientation as the image aquisition. * - * @param {boolean} silent Do not send event. - * @returns {boolean} False if not in bounds. + * @returns {boolean} True if in aquisition plane. */ - incrementScrollIndex(silent: boolean): boolean; + isAquisitionOrientation(): boolean; #private; } @@ -3151,17 +5293,37 @@ export declare class ViewConfig { */ orientation: string | undefined; /** - * Optional view colour map. + * Optional view colour map name. * - * @type {ColourMap|undefined} + * @type {string|undefined} */ - colourMap: ColourMap | undefined; + colourMap: string | undefined; /** * Optional layer opacity; in [0, 1] range. * * @type {number|undefined} */ opacity: number | undefined; + /** + * Optional layer window level preset name. + * If present, the preset name will be used and + * the window centre and width ignored. + * + * @type {string|undefined} + */ + wlPresetName: string | undefined; + /** + * Optional layer window center. + * + * @type {number|undefined} + */ + windowCenter: number | undefined; + /** + * Optional layer window width. + * + * @type {number|undefined} + */ + windowWidth: number | undefined; } /** @@ -3170,15 +5332,14 @@ export declare class ViewConfig { export declare class ViewController { /** * @param {View} view The associated view. - * @param {number} index The associated data index. */ - constructor(view: View, index: number); + constructor(view: View); /** * Get the plane helper. * - * @returns {object} The helper. + * @returns {PlaneHelper} The helper. */ - getPlaneHelper(): object; + getPlaneHelper(): PlaneHelper; /** * Check is the associated image is a mask. * @@ -3186,33 +5347,21 @@ export declare class ViewController { */ isMask(): boolean; /** - * Get the mask segment helper. - * - * @returns {object} The helper. - */ - getMaskSegmentHelper(): object; - /** - * Apply the hidden segments list by setting - * the corresponding alpha function. + * Initialise the controller. */ - applyHiddenSegments(): void; + initialise(): void; /** - * Delete a segment. + * Get the image modality. * - * @param {number} segmentNumber The segment number. - * @param {Function} exeCallback The post execution callback. - */ - deleteSegment(segmentNumber: number, exeCallback: Function): void; - /** - * Initialise the controller. + * @returns {string} The modality. */ - initialise(): void; + getModality(): string; /** * Get the window/level presets names. * - * @returns {Array} The presets names. + * @returns {string[]} The presets names. */ - getWindowLevelPresetsNames(): any[]; + getWindowLevelPresetsNames(): string[]; /** * Add window/level presets to the view. * @@ -3250,6 +5399,26 @@ export declare class ViewController { * @returns {Index} The current index. */ getCurrentIndex(): Index; + /** + * Get the SOP image UID of the current image. + * + * @returns {string} The UID. + */ + getCurrentImageUid(): string; + /** + * Get the image origin for a image UID. + * + * @param {string} uid The UID. + * @returns {Point3D|undefined} The origin. + */ + getOriginForImageUid(uid: string): Point3D | undefined; + /** + * Check if the image includes an UID. + * + * @param {string} uid The UID. + * @returns {boolean} True if present. + */ + includesImageUid(uid: string): boolean; /** * Get the current oriented index. * @@ -3269,43 +5438,56 @@ export declare class ViewController { */ getCurrentScrollIndexValue(): object; /** - * Get the origin at a given posittion. + * Get the first origin or at a given position. * - * @param {Point} position The input position. - * @returns {Point} The origin. + * @param {Point} [position] Optional position. + * @returns {Point3D} The origin. + */ + getOrigin(position?: Point): Point3D; + /** + * Is this view in the same orientation as the image aquisition. + * + * @returns {boolean} True if in aquisition plane. + */ + isAquisitionOrientation(): boolean; + /** + * Get a list of points that define the plane at input position, + * given this classes orientation. + * + * @param {Point} position The position. + * @returns {Point3D[]} An origin and 2 cosines vectors. */ - getOrigin(position: Point): Point; + getPlanePoints(position: Point): Point3D[]; /** * Get the current scroll position value. * - * @returns {object} The value. + * @returns {number} The value. */ - getCurrentScrollPosition(): object; + getCurrentScrollPosition(): number; /** * Generate display image data to be given to a canvas. * * @param {ImageData} array The array to fill in. - * @param {Index} index Optional index at which to generate, + * @param {Index} [index] Optional index at which to generate, * otherwise generates at current index. */ - generateImageData(array: ImageData, index: Index): void; + generateImageData(array: ImageData, index?: Index): void; /** * Set the associated image. * * @param {Image} img The associated image. - * @param {number} index The data index of the image. */ - setImage(img: Image_2, index: number): void; + setImage(img: Image_2): void; /** - * Get the current spacing. + * Get the current view (2D) spacing. * - * @returns {Array} The 2D spacing. + * @returns {Scalar2D} The spacing as a 2D array. */ - get2DSpacing(): any[]; + get2DSpacing(): Scalar2D; /** * Get the image rescaled value at the input position. * - * @param {Point} position the input position. + * @param {Point} position The input position. * @returns {number|undefined} The image value or undefined if out of bounds * or no quantifiable (for ex RGB). */ @@ -3313,7 +5495,7 @@ export declare class ViewController { /** * Get the image pixel unit. * - * @returns {string} The unit + * @returns {string} The unit. */ getPixelUnit(): string; /** @@ -3327,10 +5509,10 @@ export declare class ViewController { /** * Get some values from the associated image in variable regions. * - * @param {Array} regions A list of regions. + * @param {number[][][]} regions A list of [x, y] pairs (min, max). * @returns {Array} A list of values. */ - getImageVariableRegionValues(regions: any[]): any[]; + getImageVariableRegionValues(regions: number[][][]): any[]; /** * Can the image values be quantified? * @@ -3341,8 +5523,15 @@ export declare class ViewController { * Can window and level be applied to the data? * * @returns {boolean} True if possible. + * @deprecated Since v0.33, please use isMonochrome instead. */ canWindowLevel(): boolean; + /** + * Is the data monochrome. + * + * @returns {boolean} True if the data is monochrome. + */ + isMonochrome(): boolean; /** * Can the data be scrolled? * @@ -3351,17 +5540,25 @@ export declare class ViewController { */ canScroll(): boolean; /** - * Get the image size. + * Get the oriented image size. * * @returns {Size} The size. */ getImageSize(): Size; + /** + * Is the data size larger than one in the given dimension? + * + * @param {number} dim The dimension. + * @returns {boolean} True if the image size is larger than one + * in the given dimension. + */ + moreThanOne(dim: number): boolean; /** * Get the image world (mm) 2D size. * - * @returns {object} The 2D size as {x,y}. + * @returns {Scalar2D} The 2D size as {x,y}. */ - getImageWorldSize(): object; + getImageWorldSize(): Scalar2D; /** * Get the image rescaled data range. * @@ -3376,12 +5573,13 @@ export declare class ViewController { */ equalImageMeta(meta: object): boolean; /** - * Check is the provided position can be set. + * Check if the current position (default) or + * the provided position is in bounds. * - * @param {Point} position The position. + * @param {Point} [position] Optional position. * @returns {boolean} True is the position is in bounds. */ - canSetPosition(position: Point): boolean; + isPositionInBounds(position?: Point): boolean; /** * Set the current position. * @@ -3392,20 +5590,28 @@ export declare class ViewController { */ setCurrentPosition(pos: Point, silent?: boolean): boolean; /** - * Get a position from a 2D (x,y) position. + * Get a world position from a 2D plane position. * - * @param {number} x The column position. - * @param {number} y The row position. + * @param {Point2D} point2D The input point. + * @param {number} [k] Optional slice index, + * if undefined, uses the current one. * @returns {Point} The associated position. */ - getPositionFromPlanePoint(x: number, y: number): Point; + getPositionFromPlanePoint(point2D: Point2D, k?: number): Point; + /** + * Get a 2D plane position from a world position. + * + * @param {Point} point The 3D position. + * @returns {Point2D} The 2D position. + */ + getPlanePositionFromPosition(point: Point): Point2D; /** - * Get a 2D (x,y) position from a position. + * Get the index of a world position. * * @param {Point} point The 3D position. - * @returns {object} The 2D position. + * @returns {Index} The index. */ - getPlanePositionFromPosition(point: Point): object; + getIndexFromPosition(point: Point): Index; /** * Set the current index. * @@ -3418,17 +5624,43 @@ export declare class ViewController { * Get a plane 3D position from a plane 2D position: does not compensate * for the image origin. Needed for setting the scale center... * - * @param {object} point2D The 2D position as {x,y}. + * @param {Point2D} point2D The 2D position. * @returns {Point3D} The 3D point. */ - getPlanePositionFromPlanePoint(point2D: object): Point3D; + getPlanePositionFromPlanePoint(point2D: Point2D): Point3D; /** * Get a 3D offset from a plane one. * - * @param {object} offset2D The plane offset as {x,y}. + * @param {Scalar2D} offset2D The plane offset as {x,y}. * @returns {Vector3D} The 3D world offset. */ - getOffset3DFromPlaneOffset(offset2D: object): Vector3D; + getOffset3DFromPlaneOffset(offset2D: Scalar2D): Vector3D; + /** + * Get the current position incremented in the input direction. + * + * @param {number} dim The direction in which to increment. + * @returns {Point} The resulting point. + */ + getIncrementPosition(dim: number): Point; + /** + * Get the current position decremented in the input direction. + * + * @param {number} dim The direction in which to decrement. + * @returns {Point} The resulting point. + */ + getDecrementPosition(dim: number): Point; + /** + * Get the current position decremented in the scroll direction. + * + * @returns {Point} The resulting point. + */ + getIncrementScrollPosition(): Point; + /** + * Get the current position decremented in the scroll direction. + * + * @returns {Point} The resulting point. + */ + getDecrementScrollPosition(): Point; /** * Increment the provided dimension. * @@ -3470,62 +5702,57 @@ export declare class ViewController { /** * Get the window/level. * - * @returns {object} The window center and width. + * @returns {WindowLevel} The window and level. + */ + getWindowLevel(): WindowLevel; + /** + * Get the current window level preset name. + * + * @returns {string} The preset name. */ - getWindowLevel(): object; + getCurrentWindowPresetName(): string; /** - * Set the window/level. + * Set the window and level. * - * @param {number} wc The window center. - * @param {number} ww The window width. + * @param {WindowLevel} wl The window and level. */ - setWindowLevel(wc: number, ww: number): void; + setWindowLevel(wl: WindowLevel): void; /** * Get the colour map. * - * @returns {ColourMap} The colour map. + * @returns {string} The colour map name. */ - getColourMap(): ColourMap; + getColourMap(): string; /** * Set the colour map. * - * @param {ColourMap} colourMap The colour map. + * @param {string} name The colour map name. */ - setColourMap(colourMap: ColourMap): void; + setColourMap(name: string): void; /** * @callback alphaFn@callback alphaFn - * @param {object} value The pixel value. - * @param {object} index The values' index. - * @returns {number} The value to display. + * @param {number[]|number} value The pixel value. + * @param {number} index The values' index. + * @returns {number} The opacity of the input value. */ /** * Set the view per value alpha function. * * @param {alphaFn} func The function. */ - setViewAlphaFunction(func: (value: object, index: object) => number): void; + setViewAlphaFunction(func: (value: number[] | number, index: number) => number): void; /** - * Set the colour map from a name. - * - * @param {string} name The name of the colour map to set. - */ - setColourMapFromName(name: string): void; - /** - * Add an event listener to this class. + * Bind the view image to the provided layer. * - * @param {string} type The event type. - * @param {Function} callback The function associated with the provided - * event type, will be called with the fired event. + * @param {ViewLayer} viewLayer The layer to bind. */ - addEventListener(type: string, callback: Function): void; + bindImageAndLayer(viewLayer: ViewLayer): void; /** - * Remove an event listener from this class. + * Unbind the view image to the provided layer. * - * @param {string} type The event type. - * @param {Function} callback The function associated with the provided - * event type. + * @param {ViewLayer} viewLayer The layer to bind. */ - removeEventListener(type: string, callback: Function): void; + unbindImageAndLayer(viewLayer: ViewLayer): void; #private; } @@ -3539,24 +5766,36 @@ export declare class ViewLayer { */ constructor(containerDiv: HTMLElement); /** - * Get the associated data index. + * Get the associated data id. * - * @returns {number} The index. + * @returns {string} The data id. + */ + getDataId(): string; + /** + * Get the layer scale. + * + * @returns {Scalar2D} The scale as {x,y}. + */ + getScale(): Scalar2D; + /** + * Get the layer zoom offset without the fit scale. + * + * @returns {Scalar2D} The offset as {x,y}. */ - getDataIndex(): number; + getAbsoluteZoomOffset(): Scalar2D; /** - * Set the imageSmoothingEnabled flag value. + * Set the imageSmoothing flag value. * * @param {boolean} flag True to enable smoothing. */ - enableImageSmoothing(flag: boolean): void; + setImageSmoothing(flag: boolean): void; /** * Set the associated view. * * @param {object} view The view. - * @param {number} index The associated data index. + * @param {string} dataId The associated data id. */ - setView(view: object, index: number): void; + setView(view: object, dataId: string): void; /** * Get the view controller. * @@ -3576,31 +5815,50 @@ export declare class ViewLayer { * @function */ onimageset: (event: object) => void; + /** + * Bind this layer to the view image. + */ + bindImage(): void; + /** + * Unbind this layer to the view image. + */ + unbindImage(): void; + /** + * Handle an image content change event. + * + * @param {object} event The event. + * @function + */ + onimagecontentchange: (event: object) => void; /** * Handle an image change event. * * @param {object} event The event. * @function */ - onimagechange: (event: object) => void; + onimagegeometrychange: (event: object) => void; /** * Get the id of the layer. * * @returns {string} The string id. */ getId(): string; + /** + * Remove the HTML element from the DOM. + */ + removeFromDOM(): void; /** * Get the layer base size (without scale). * - * @returns {object} The size as {x,y}. + * @returns {Scalar2D} The size as {x,y}. */ - getBaseSize(): object; + getBaseSize(): Scalar2D; /** * Get the image world (mm) 2D size. * - * @returns {object} The 2D size as {x,y}. + * @returns {Scalar2D} The 2D size as {x,y}. */ - getImageWorldSize(): object; + getImageWorldSize(): Scalar2D; /** * Get the layer opacity. * @@ -3621,67 +5879,85 @@ export declare class ViewLayer { * Add a flip offset along the layer Y axis. */ addFlipOffsetY(): void; + /** + * Flip the scale along the layer X axis. + */ + flipScaleX(): void; + /** + * Flip the scale along the layer Y axis. + */ + flipScaleY(): void; + /** + * Flip the scale along the layer Z axis. + */ + flipScaleZ(): void; /** * Set the layer scale. * - * @param {object} newScale The scale as {x,y}. + * @param {Scalar3D} newScale The scale as {x,y,z}. * @param {Point3D} [center] The scale center. */ - setScale(newScale: object, center?: Point3D): void; + setScale(newScale: Scalar3D, center?: Point3D): void; + /** + * Initialise the layer scale. + * + * @param {Scalar3D} newScale The scale as {x,y,z}. + * @param {Scalar2D} absoluteZoomOffset The zoom offset as {x,y} + * without the fit scale (as provided by getAbsoluteZoomOffset). + */ + initScale(newScale: Scalar3D, absoluteZoomOffset: Scalar2D): void; /** * Set the base layer offset. Updates the layer offset. * * @param {Vector3D} scrollOffset The scroll offset vector. * @param {Vector3D} planeOffset The plane offset vector. + * @param {Point3D} [layerGroupOrigin] The layer group origin. + * @param {Point3D} [layerGroupOrigin0] The layer group first origin. * @returns {boolean} True if the offset was updated. */ - setBaseOffset(scrollOffset: Vector3D, planeOffset: Vector3D): boolean; + setBaseOffset(scrollOffset: Vector3D, planeOffset: Vector3D, layerGroupOrigin?: Point3D, layerGroupOrigin0?: Point3D): boolean; /** * Set the layer offset. * - * @param {object} newOffset The offset as {x,y}. + * @param {Scalar3D} newOffset The offset as {x,y,z}. */ - setOffset(newOffset: object): void; + setOffset(newOffset: Scalar3D): void; /** - * Transform a display position to an index. + * Transform a display position to a 2D index. * - * @param {number} x The X position. - * @param {number} y The Y position. - * @returns {Index} The equivalent index. + * @param {Point2D} point2D The input point. + * @returns {Index} The equivalent 2D index. */ - displayToPlaneIndex(x: number, y: number): Index; + displayToPlaneIndex(point2D: Point2D): Index; /** * Remove scale from a display position. * - * @param {number} x The X position. - * @param {number} y The Y position. - * @returns {object} The de-scaled position as {x,y}. + * @param {Point2D} point2D The input point. + * @returns {Point2D} The de-scaled point. */ - displayToPlaneScale(x: number, y: number): object; + displayToPlaneScale(point2D: Point2D): Point2D; /** * Get a plane position from a display position. * - * @param {number} x The X position. - * @param {number} y The Y position. - * @returns {object} The plane position as {x,y}. + * @param {Point2D} point2D The input point. + * @returns {Point2D} The plane position. */ - displayToPlanePos(x: number, y: number): object; + displayToPlanePos(point2D: Point2D): Point2D; /** * Get a display position from a plane position. * - * @param {number} x The X position. - * @param {number} y The Y position. - * @returns {object} The display position as {x,y}. + * @param {Point2D} point2D The input point. + * @returns {Point2D} The display position, can be individually + * undefined if out of bounds. */ - planePosToDisplay(x: number, y: number): object; + planePosToDisplay(point2D: Point2D): Point2D; /** * Get a main plane position from a display position. * - * @param {number} x The X position. - * @param {number} y The Y position. - * @returns {object} The main plane position as {x,y}. + * @param {Point2D} point2D The input point. + * @returns {Point2D} The main plane position. */ - displayToMainPlanePos(x: number, y: number): object; + displayToMainPlanePos(point2D: Point2D): Point2D; /** * Display the layer. * @@ -3696,28 +5972,28 @@ export declare class ViewLayer { isVisible(): boolean; /** * Draw the content (imageData) of the layer. - * The imageData variable needs to be set + * The imageData variable needs to be set. * * @fires App#renderstart * @fires App#renderend */ draw(): void; /** - * Initialise the layer: set the canvas and context + * Initialise the layer: set the canvas and context. * - * @param {object} size The image size as {x,y}. - * @param {object} spacing The image spacing as {x,y}. + * @param {Scalar2D} size The image size as {x,y}. + * @param {Scalar2D} spacing The image spacing as {x,y}. * @param {number} alpha The initial data opacity. */ - initialise(size: object, spacing: object, alpha: number): void; + initialise(size: Scalar2D, spacing: Scalar2D, alpha: number): void; /** * Fit the layer to its parent container. * - * @param {number} fitScale1D The 1D fit scale. - * @param {object} fitSize The fit size as {x,y}. - * @param {object} fitOffset The fit offset as {x,y}. + * @param {Scalar2D} containerSize The fit size as {x,y}. + * @param {number} divToWorldSizeRatio The div to world size ratio. + * @param {Scalar2D} fitOffset The fit offset as {x,y}. */ - fitToContainer(fitScale1D: number, fitSize: object, fitOffset: object): void; + fitToContainer(containerSize: Scalar2D, divToWorldSizeRatio: number, fitOffset: Scalar2D): void; /** * Enable and listen to container interaction events. */ @@ -3758,132 +6034,33 @@ export declare class ViewLayer { } /** - * WindowCenterAndWidth class. - *
Pseudo-code: - * 
- *  if (x <= c - 0.5 - (w-1)/2), then y = ymin
- *  else if (x > c - 0.5 + (w-1)/2), then y = ymax,
- *  else y = ((x - (c - 0.5)) / (w-1) + 0.5) * (ymax - ymin) + ymin
- *
- * - * @see DICOM doc for [Window Center and Window Width]{@link http://dicom.nema.org/dicom/2013/output/chtml/part03/sect_C.11.html#sect_C.11.2.1.2} + * Window and Level also known as window width and center. */ -export declare class WindowCenterAndWidth { +export declare class WindowLevel { /** * @param {number} center The window center. * @param {number} width The window width. */ constructor(center: number, width: number); /** - * Get the window center. - * - * @returns {number} The window center. - */ - getCenter(): number; - /** - * Get the window width. - * - * @returns {number} The window width. - */ - getWidth(): number; - /** - * Set the output value range. - * - * @param {string} min The output value minimum. - * @param {string} max The output value maximum. - */ - setRange(min: string, max: string): void; - /** - * Set the signed offset. - * - * @param {number} offset The signed data offset, - * typically: slope * ( size / 2). - */ - setSignedOffset(offset: number): void; - /** - * Apply the window level on an input value. - * - * @param {number} value The value to rescale as an integer. - * @returns {number} The leveled value, in the - * [ymin, ymax] range (default [0,255]). - */ - apply(value: number): number; - /** - * Check for window level equality. - * - * @param {WindowCenterAndWidth} rhs The other window level to compare to. - * @returns {boolean} True if both window level are equal. - */ - equals(rhs: WindowCenterAndWidth): boolean; - /** - * Get a string representation of the window level. - * - * @returns {string} The window level as a string. - */ - toString(): string; - #private; -} - -/** - * Window LUT class. - * Typically converts from float to integer. - */ -export declare class WindowLut { - /** - * @param {RescaleLut} rescaleLut The associated rescale LUT. - * @param {boolean} isSigned Flag to know if the data is signed or not. - */ - constructor(rescaleLut: RescaleLut, isSigned: boolean); - /** - * Get the window / level. - * - * @returns {WindowCenterAndWidth} The window / level. - */ - getWindowLevel(): WindowCenterAndWidth; - /** - * Get the signed flag. - * - * @returns {boolean} The signed flag. - */ - isSigned(): boolean; - /** - * Get the rescale lut. - * - * @returns {RescaleLut} The rescale lut. - */ - getRescaleLut(): RescaleLut; - /** - * Is the lut ready to use or not? If not, the user must - * call 'update'. - * - * @returns {boolean} True if the lut is ready to use. - */ - isReady(): boolean; - /** - * Set the window center and width. + * The window center. * - * @param {WindowCenterAndWidth} wl The window level. - */ - setWindowLevel(wl: WindowCenterAndWidth): void; - /** - * Update the lut if needed.. + * @type {number} */ - update(): void; + center: number; /** - * Get the length of the LUT array. + * The window width. * - * @returns {number} The length of the LUT array. + * @type {number} */ - getLength(): number; + width: number; /** - * Get the value of the LUT at the given offset. + * Check for equality. * - * @param {number} offset The input offset in [0,2^bitsStored] range. - * @returns {number} The integer value (default [0,255]) of the LUT - * at the given offset. + * @param {WindowLevel} rhs The other object to compare to. + * @returns {boolean} True if both objects are equal. */ - getValue(offset: number): number; - #private; + equals(rhs: WindowLevel): boolean; } /** diff --git a/demo/stable/node_modules/dwv/dist/dwv.min.js b/demo/stable/node_modules/dwv/dist/dwv.min.js index 4d7e2ecd..3a1bdbd2 100644 --- a/demo/stable/node_modules/dwv/dist/dwv.min.js +++ b/demo/stable/node_modules/dwv/dist/dwv.min.js @@ -1,2 +1,2 @@ -!function(e,t){"object"==typeof exports&&"object"==typeof module?module.exports=t(require("konva"),require("jszip"),require("magic-wand-tool")):"function"==typeof define&&define.amd?define(["konva","jszip","konmagic-wand-tool"],t):"object"==typeof exports?exports.dwv=t(require("konva"),require("jszip"),require("magic-wand-tool")):e.dwv=t(e.Konva,e.JSZip,e.MagicWand)}(this,(function(e,t,n){return function(){"use strict";var i={626:function(e){e.exports=t},436:function(t){t.exports=e},812:function(e){e.exports=n}},r={};function o(e){var t=r[e];if(void 0!==t)return t.exports;var n=r[e]={exports:{}};return i[e](n,n.exports,o),n.exports}o.n=function(e){var t=e&&e.__esModule?function(){return 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this.#Te}setAlphaFunction(e){this.#Te=e,this.#ge({type:"alphafuncchange"})}getCurrentWindowLut(e){this.getCurrentIndex()||this.setInitialIndex();const t=this.getCurrentIndex();void 0===e&&(e=this.#me.getRescaleSlopeAndIntercept(t));let i=null;if(this.#De&&void 0!==this.#fe[this.#De]&&void 0!==this.#fe[this.#De].perslice&&!0===this.#fe[this.#De].perslice){const e=this.#me.getSecondaryOffset(t);i=this.#fe[this.#De].wl[e]}i||(this.#ye||this.setWindowLevelPresetById(0,!0),i=this.#ye);let r=this.#pe[e.toString()];if(void 0===r){const e=new n(this.#me.getRescaleSlopeAndIntercept(),this.#me.getMeta().BitsStored),t=new s(e,this.#me.getMeta().IsSigned);this.addWindowLut(t),r=t}const o=r.getWindowLevel();return i.equals(o)||(r.setWindowLevel(i),r.update(),o&&o.getWidth()===i.getWidth()&&o.getCenter()===i.getCenter()||this.#ge({type:"wlchange",value:[i.getCenter(),i.getWidth()],wc:i.getCenter(),ww:i.getWidth(),skipGenerate:!0})),r}addWindowLut(e){const t=e.getRescaleLut().getRSI();this.#pe[t.toString()]=e}getWindowPresets(){return this.#fe}getWindowPresetsNames(){return Object.keys(this.#fe)}setWindowPresets(e){this.#fe=e}setDefaultColourMap(e){this.#Ce=e}addWindowPresets(e){const t=Object.keys(e);let n=null;for(let i=0;i{this.#ue.fireEvent(e)};getWindowLevelMinMax(){const e=this.getImage().getRescaledDataRange(),t=e.min;let n=e.max-t;return n<1&&(g.warn("Zero or negative window width, defaulting to one."),n=1),new r(t+n/2,n)}setWindowLevelMinMax(){const e=this.getWindowLevelMinMax();this.setWindowLevel(e.getCenter(),e.getWidth(),"minmax")}generateImageData(e,t){void 0===t&&(this.getCurrentIndex()||this.setInitialIndex(),t=this.getCurrentIndex());const n=this.getImage(),i=Le(n,t,!1,this.getOrientation()),r=n.getPhotometricInterpretation();switch(r){case"MONOCHROME1":case"MONOCHROME2":!function(e,t,n,i,r){let o=0,a=0,s=t.next();for(;!s.done;)a=i.getValue(s.value),e.data[o]=r.red[a],e.data[o+1]=r.green[a],e.data[o+2]=r.blue[a],e.data[o+3]=n(s.value,s.index),o+=4,s=t.next()}(e,i,this.getAlphaFunction(),this.getCurrentWindowLut(),this.getColourMap());break;case"PALETTE COLOR":!function(e,t,n,i,r){const o=function(e){return e>>8};r&&g.info("Scaling 16bits data to 8bits.");let a=0,s=0,l=t.next();for(;!l.done;)s=l.value,r?(e.data[a]=o(i.red[s]),e.data[a+1]=o(i.green[s]),e.data[a+2]=o(i.blue[s])):(e.data[a]=i.red[s],e.data[a+1]=i.green[s],e.data[a+2]=i.blue[s]),e.data[a+3]=n(s,l.index),a+=4,l=t.next()}(e,i,this.getAlphaFunction(),this.getColourMap(),16===n.getMeta().BitsStored);break;case"RGB":!function(e,t,n){let i=0,r=t.next();for(;!r.done;)e.data[i]=r.value[0],e.data[i+1]=r.value[1],e.data[i+2]=r.value[2],e.data[i+3]=n(r.value,r.index),i+=4,r=t.next()}(e,i,this.getAlphaFunction());break;case"YBR_FULL":!function(e,t,n){let i=0,r=null,o=t.next();for(;!o.done;)a=o.value[0],s=o.value[1],r={r:a+1.402*((l=o.value[2])-128),g:a-.34414*(s-128)-.71414*(l-128),b:a+1.772*(s-128)},e.data[i]=r.r,e.data[i+1]=r.g,e.data[i+2]=r.b,e.data[i+3]=n(o.value,o.index),i+=4,o=t.next();var a,s,l}(e,i,this.getAlphaFunction());break;default:throw new Error("Unsupported photometric interpretation: "+r)}}incrementIndex(t,n){const i=this.getCurrentIndex(),r=new Array(i.length());r.fill(0),t