-
Notifications
You must be signed in to change notification settings - Fork 2
/
Copy path.treeDag.json
1 lines (1 loc) · 2.32 KB
/
.treeDag.json
1
{"name": "root", "children": [{"name": "reads_download_1_1", "process": {"pid": "1_1", "input": "accessions", "output": "fastq", "lane": 1, "directives": "reads_downloadcpus: 1memory: 1GBcontainer: flowcraft/getseqenaversion: 0.4.0-1"}, "children": [{"name": "downsample_fastq_1_2", "process": {"pid": "1_2", "input": "fastq", "output": "fastq", "lane": 1, "directives": "downsample_fastqcpus: 1memory: { 4.GB * task.attempt }container: flowcraft/seqtkversion: 1.3.0-3"}, "children": [{"name": "integrity_coverage_1_3", "process": {"pid": "1_3", "input": "fastq", "output": "fastq", "lane": 1, "directives": "integrity_coverage"}, "children": [{"name": "fastqc_trimmomatic_1_4", "process": {"pid": "1_4", "input": "fastq", "output": "fastq", "lane": 1, "directives": "fastqccpus: 2memory: 4GBcontainer: flowcraft/fastqcversion: 0.11.7-1trimmomaticcpus: 2memory: { 4.GB * task.attempt }container: flowcraft/trimmomaticversion: 0.36-1"}, "children": [{"name": "check_coverage_1_5", "process": {"pid": "1_5", "input": "fastq", "output": "fastq", "lane": 1, "directives": "check_coverage"}, "children": [{"name": "fastqc_1_6", "process": {"pid": "1_6", "input": "fastq", "output": "fastq", "lane": 1, "directives": "fastqc2cpus: 2memory: 4GBcontainer: flowcraft/fastqcversion: 0.11.7-1"}, "children": [{"name": "spades_1_7", "process": {"pid": "1_7", "input": "fastq", "output": "fasta", "lane": 1, "directives": "spadescpus: 4memory: { 5.GB * task.attempt }container: flowcraft/spadesversion: 3.12.0-1scratch: true"}, "children": [{"name": "assembly_mapping_1_8", "process": {"pid": "1_8", "input": "fasta", "output": "fasta", "lane": 1, "directives": "assembly_mappingcpus: 4memory: { 5.GB * task.attempt }container: flowcraft/bowtie2_samtoolsversion: 1.0.0-1process_assembly_mappingcpus: 1memory: { 5.GB * task.attempt }container: flowcraft/bowtie2_samtoolsversion: 1.0.0-1"}, "children": [{"name": "pilon_1_9", "process": {"pid": "1_9", "input": "fasta", "output": "fasta", "lane": 1, "directives": "piloncpus: 4memory: { 7.GB * task.attempt }container: flowcraft/pilonversion: 1.22.0-1pilon_reportcpus: 1memory: { 7.GB * task.attempt }container: flowcraft/pilonversion: 1.22.0-1"}, "children": [{"name": "mlst_1_10", "process": {"pid": "1_10", "input": "fasta", "output": "fasta", "lane": 1, "directives": "mlstcontainer: ummidock/mlst"}, "children": []}]}]}]}]}]}]}]}]}]}]}