DESCRIPTION

Package: packFinder
Type: Package
Title: de novo Annotation of Pack-TYPE Transposable Elements
Version: 1.9.3
Authors@R: c(
    person(given = "Jack", 
           family = "Gisby", 
           role = c("aut", "cre"), 
           email = "jackgisby@gmail.com",
           comment = c(ORCID = "0000-0003-0511-8123")), 
    person(given = "Marco", 
           family = "Catoni", 
           role = "aut", 
           email="m.catoni@bham.ac.uk",
           comment = c(ORCID = "0000-0002-3258-2522"))
    )
Description: Algorithm and tools for in silico pack-TYPE transposon discovery. Filters a given genome for properties unique to DNA transposons and provides tools for the investigation of returned matches. Sequences are input in DNAString format, and ranges are returned as a dataframe (in the format returned by as.dataframe(GRanges)).
License: GPL-2
Encoding: UTF-8
Depends:
    R (>= 4.1.0)
Imports: 
    Biostrings,
    GenomicRanges,
    kmer,
    ape,
    methods,
    IRanges,
    S4Vectors
Suggests:
    biomartr,
    knitr,
    rmarkdown,
    testthat,
    dendextend,
    biocViews,
    BiocCheck,
    BiocStyle
RoxygenNote: 7.2.0
VignetteBuilder: knitr
URL: https://github.com/jackgisby/packFinder
BugReports: https://github.com/jackgisby/packFinder/issues
biocViews: Genetics, SequenceMatching, Annotation