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cpt.yaml
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cpt.yaml
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---
install_repository_dependencies: true
install_resolver_dependencies: true
install_tool_dependencies: false
tools:
- name: cpt_fasta_remove_id
owner: cpt
tool_panel_section_label: FASTA/FASTQ
- name: cpt_get_orfs
owner: cpt
tool_panel_section_label: Annotation
- name: cpt_convert_mga
owner: cpt
tool_panel_section_label: Convert Formats
- name: cpt_gff_add_parents
owner: cpt
tool_panel_section_label: Annotation
- name: cpt_fix_aragorn
owner: cpt
tool_panel_section_label: Convert Formats
- name: cpt_fix_sixpack
owner: cpt
tool_panel_section_label: Annotation
- name: cpt_shinefind
owner: cpt
tool_panel_section_label: Annotation
- name: cpt_type_filter
owner: cpt
tool_panel_section_label: Annotation
- name: cpt_req_phage_start
owner: cpt
tool_panel_section_label: Annotation
- name: cpt_remove_annotations
owner: cpt
tool_panel_section_label: Annotation
- name: cpt_prep_for_apollo
owner: cpt
tool_panel_section_label: Annotation
- name: cpt_convert_glimmer
owner: cpt
tool_panel_section_label: Annotation
- name: cpt_intron_detection
owner: cpt
tool_panel_section_label: Annotation
- name: cpt_gff_extract_seq
owner: cpt
tool_panel_section_label: Annotation
- name: cpt_lipory
owner: cpt
tool_panel_section_label: Annotation
- name: cpt_intersect_adjacent
owner: cpt
tool_panel_section_label: Annotation
## deprecated tool, replaced by cpt_intersect_adj
- name: cpt_related_genomes_nuc
owner: cpt
tool_panel_section_label: Phylogenetics
- name: cpt_related_genomes_prot
owner: cpt
tool_panel_section_label: Phylogenetics
## deprecated tool, replaced by cpt_protein_blast_grouping
- name: cpt_xmfa_to_table
owner: cpt
tool_panel_section_label: Phylogenetics
- name: cpt_gbk_to_5col
owner: cpt
tool_panel_section_label: Convert Formats
- name: cpt_gff_to_gbk
owner: cpt
tool_panel_section_label: Convert Formats
- name: cpt_gbk_renumber
owner: cpt
tool_panel_section_label: Annotation
- name: cpt_genome_editor
owner: cpt
tool_panel_section_label: Annotation
- name: cpt_phageqc_annotations
owner: cpt
tool_panel_section_label: Annotation
- name: cpt_annotation_table
owner: cpt
tool_panel_section_label: Annotation
- name: cpt_linear_genome_plot
owner: cpt
tool_panel_section_label: Graph/Display Data
- name: cpt_gff_split
owner: cpt
tool_panel_section_label: Convert Formats
- name: cpt_gbk_to_gff
owner: cpt
tool_panel_section_label: Convert Formats
- name: cpt_gff_rebase
owner: cpt
tool_panel_section_label: Annotation
- name: cpt_require_shine
owner: cpt
tool_panel_section_label: Annotation
- name: cpt_fasta_translate
owner: cpt
tool_panel_section_label: Annotation
- name: cpt_protein_blast_grouping
owner: cpt
tool_panel_section_label: Phylogenetics
- name: cpt_prophage_relatedness
owner: cpt
tool_panel_section_label: Annotation
- name: cpt_intersect_adj
owner: cpt
tool_panel_section_label: Annotation
- name: phageterm
owner: mmonot
tool_panel_section_label: Assembly
- name: phagetermvirome
owner: bioit_sciensano
tool_panel_section_label: Metagenomic Analysis