From ba59c3595dd210e35cc9c44c4a1778c0a8b69e7e Mon Sep 17 00:00:00 2001 From: M Bernt Date: Mon, 7 Oct 2024 15:36:22 +0200 Subject: [PATCH] Add extra file for ufz (#788) MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit * add ufz * is this the section label * Update ufz.yaml * add more tools --------- Co-authored-by: Björn Grüning --- Makefile | 1 + diverse.yaml | 6 ------ diverse.yaml.lock | 12 +----------- ufz.yaml | 30 ++++++++++++++++++++++++++++++ ufz.yaml.lock | 14 ++++++++++++++ 5 files changed, 46 insertions(+), 17 deletions(-) create mode 100644 ufz.yaml create mode 100644 ufz.yaml.lock diff --git a/Makefile b/Makefile index 1c27eaa6..b603ce7e 100644 --- a/Makefile +++ b/Makefile @@ -54,6 +54,7 @@ update_trusted: $(UPDATE_TRUSTED_IUC) ## Run the update script python3 scripts/update-tool.py eirene.yaml python3 scripts/update-tool.py lldelisle.yaml python3 scripts/update-tool.py tools_q2d2.yaml + python3 scripts/update-tool.py ufz.yaml update_all: $(UPDATED_YAMLS) diff --git a/diverse.yaml b/diverse.yaml index c926eb13..2f0208b8 100644 --- a/diverse.yaml +++ b/diverse.yaml @@ -7,10 +7,4 @@ tools: - name: srnapipe owner: brasset_jensen tool_panel_section_label: RNA Analysis - - name: genomad_end_to_end - owner: ufz - tool_panel_section_label: Metagenomic Analysis - - name: genomad_build_database - owner: ufz - tool_panel_section_label: Data Managers diff --git a/diverse.yaml.lock b/diverse.yaml.lock index eaa80812..c0a736cf 100644 --- a/diverse.yaml.lock +++ b/diverse.yaml.lock @@ -6,14 +6,4 @@ tools: owner: brasset_jensen revisions: - 71d5983dd41e - tool_panel_section_label: RNA Analysis -- name: genomad_end_to_end - owner: ufz - revisions: - - 955e33326e20 - tool_panel_section_label: Metagenomic Analysis -- name: genomad_build_database - owner: ufz - revisions: - - c4ec3d81eeee - tool_panel_section_label: Data Managers + tool_panel_section_label: RNA Analysis \ No newline at end of file diff --git a/ufz.yaml b/ufz.yaml new file mode 100644 index 00000000..b2f77c9a --- /dev/null +++ b/ufz.yaml @@ -0,0 +1,30 @@ +--- +install_repository_dependencies: true +install_resolver_dependencies: true +install_tool_dependencies: false + +tools: + - name: checkv_build_database + owner: ufz + tool_panel_section_label: Metagenomic Analysis + - name: checkv_end_to_end + owner: ufz + tool_panel_section_label: Data Managers + - name: genomad_end_to_end + owner: ufz + tool_panel_section_label: Metagenomic Analysis + - name: genomad_build_database + owner: ufz + tool_panel_section_label: Data Managers + - name: vibrant + owner: ufz + tool_panel_section_label: Metagenomic Analysis + - name: vibrant_build_database + owner: ufz + tool_panel_section_label: Data Managers + - name: virsorter + owner: ufz + tool_panel_section_label: Metagenomic Analysis + - name: virsorter_build_database + owner: ufz + tool_panel_section_label: Data Managers \ No newline at end of file diff --git a/ufz.yaml.lock b/ufz.yaml.lock new file mode 100644 index 00000000..ad501756 --- /dev/null +++ b/ufz.yaml.lock @@ -0,0 +1,14 @@ +install_repository_dependencies: true +install_resolver_dependencies: true +install_tool_dependencies: false +tools: +- name: genomad_end_to_end + owner: ufz + revisions: + - 955e33326e20 + tool_panel_section_label: Metagenomic Analysis +- name: genomad_build_database + owner: ufz + revisions: + - c4ec3d81eeee + tool_panel_section_label: Data Managers