openms.def

BootStrap: docker
From: ubuntu:22.04

%post
    apt-get -y update
    # to obtain the latest version of cmake need to get from the kitware repository, this is taken from https://askubuntu.com/questions/355565/how-do-i-install-the-latest-version-of-cmake-from-the-command-line
    apt-get install -y gpg software-properties-common wget
    wget -O - https://apt.kitware.com/keys/kitware-archive-latest.asc 2>/dev/null | gpg --dearmor - | tee /etc/apt/trusted.gpg.d/kitware.gpg >/dev/null
    apt-add-repository "deb https://apt.kitware.com/ubuntu/ $(lsb_release -cs) main"
    apt-get install -y kitware-archive-keyring
    rm /etc/apt/trusted.gpg.d/kitware.gpg
    apt-get -y update
    apt-get install -y cmake


    apt-get -y install build-essential autoconf patch libtool automake git
    apt-get -y install qt6-base-dev libqt6svg6-dev
    apt-get -y install libeigen3-dev libboost-random-dev libboost-regex-dev libboost-iostreams-dev libboost-date-time-dev libboost-math-dev
    apt-get -y install libxerces-c-dev zlib1g-dev libsvm-dev libbz2-dev coinor-libcoinmp-dev libhdf5-dev libglpk-dev

    # make OpenMS
    cd /Development
    mkdir OpenMS-build
    cd OpenMS-build
    cmake -DBOOST_USE_STATIC=OFF DCMAKE_PREFIX_PATH="/contrib-build/;/usr/;/usr/local" -DHAS_XSERVER=OFF -DWITH_GUI=OFF -DENABLE_TUTORIALS=OFF ../OpenMS
    make

%files
    <<<INSERT PATH TO OPENMS SOURCE HERE>>> /Development/OpenMS

%environment
    # add OpenMS library
    export LD_LIBRARY_PATH="/Development/OpenMS/lib:$LD_LIBRARY_PATH"
    
    # add TOPP tools to path
    export PATH=$PATH:/Development/OpenMS-build/bin

%labels
    Author Joshua Charkow