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NAMESPACE
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# Generated by roxygen2: do not edit by hand
export(jamPDF)
export(plot.rev_cohort)
export(plot.rev_cohort_fit)
export(plot.rev_phylo)
export(print.rev_cohort)
export(print.rev_cohort_fit)
export(print.rev_phylo)
export(revolver_analyzer)
export(revolver_check_cohort)
export(revolver_cluster)
export(revolver_cohort)
export(revolver_compute_CLtrees)
export(revolver_compute_phylogenies)
export(revolver_deletePatients)
export(revolver_dumpStatistics)
export(revolver_evo_distance)
export(revolver_fit)
export(revolver_infoclustering)
export(revolver_jackknife)
export(revolver_phylogeny)
export(revolver_plt_DET_index)
export(revolver_plt_DET_index_driver)
export(revolver_plt_compare_dendrograms)
export(revolver_plt_dendrogram)
export(revolver_plt_evodistance)
export(revolver_plt_fit_by_group)
export(revolver_plt_fit_patient)
export(revolver_plt_group_trajectories)
export(revolver_plt_itransfer_patient)
export(revolver_plt_jackknife_coclust)
export(revolver_plt_jackknife_coclust_bplot)
export(revolver_plt_jackknife_edge_counts)
export(revolver_plt_jackknife_edge_prb)
export(revolver_plt_patient_data)
export(revolver_plt_patient_trees)
export(revolver_plt_patient_trees_scores)
export(revolver_plt_penalty_barplot)
export(revolver_plt_penalty_matrix)
export(revolver_plt_rbannerplot)
export(revolver_plt_rclusters)
export(revolver_plt_trajectories_patient)
export(revolver_plt_tree)
export(revolver_removeDriver)
export(revolver_report_fit_patient)
export(revolver_report_patient)
export(revolver_subsetDrivers)
export(stats.rev_phylo)
export(summary.rev_phylo)
import(cluster)
import(crayon)
import(dendextend)
import(doParallel)
import(dynamicTreeCut)
import(foreach)
import(grDevices)
import(parallel)
importFrom(graphics,abline)
importFrom(graphics,barplot)
importFrom(graphics,boxplot)
importFrom(graphics,hist)
importFrom(graphics,layout)
importFrom(graphics,legend)
importFrom(graphics,par)
importFrom(graphics,plot)
importFrom(graphics,title)
importFrom(igraph,E)
importFrom(igraph,V)
importFrom(igraph,as_edgelist)
importFrom(igraph,components)
importFrom(igraph,graph_from_adjacency_matrix)
importFrom(igraph,is_dag)
importFrom(igraph,layout.reingold.tilford)
importFrom(igraph,topo_sort)
importFrom(methods,is)
importFrom(pio,pioHdr)
importFrom(pio,pioTit)
importFrom(purrr,map_dbl)
importFrom(qualvar,VA)
importFrom(stats,as.dendrogram)
importFrom(stats,as.dist)
importFrom(stats,as.hclust)
importFrom(stats,dendrapply)
importFrom(stats,dist)
importFrom(stats,is.leaf)
importFrom(stats,median)
importFrom(stats,order.dendrogram)
importFrom(stats,quantile)
importFrom(stats,reorder)
importFrom(stats,rnorm)
importFrom(stats,sd)
importFrom(utils,capture.output)
importFrom(utils,combn)
importFrom(utils,head)
importFrom(utils,object.size)
importFrom(utils,setTxtProgressBar)
importFrom(utils,txtProgressBar)
importFrom(vegan,diversity)
importFrom(vegan,specnumber)
importFrom(writexl,write_xlsx)