diff --git a/docs/02-chapter_of_course.md b/docs/02-chapter_of_course.md index 33e47b38..519aee35 100644 --- a/docs/02-chapter_of_course.md +++ b/docs/02-chapter_of_course.md @@ -52,7 +52,7 @@ And make plots too: hist_plot <- hist(iris$Sepal.Length) ``` - +![](resources/images/02-chapter_of_course_files/figure-docx/unnamed-chunk-4-1.png) You can also save these plots to file: @@ -100,7 +100,7 @@ dev.off() How to include a Google slide. It's simplest to use the `leanbuild` package: -Major point!! example image +![](resources/images/02-chapter_of_course_files/figure-docx//1YmwKdIy9BeQ3EShgZhvtb3MgR8P6iDX4DfFD65W_gdQ_gcc4fbee202_0_141.png) But if you have the slide or some other image locally downloaded you can also use html like this: @@ -116,7 +116,11 @@ You can use `knitr::include_url()` like this: knitr::include_url("https://www.youtube.com/embed/VOCYL-FNbr0") ``` - +``` +## PhantomJS not found. You can install it with webshot::install_phantomjs(). If it is installed, please make sure the phantomjs executable can be found via the PATH variable. +``` + + OR this works: @@ -126,7 +130,7 @@ OR this works: This works: - + Or this: @@ -147,7 +151,7 @@ This works: knitr::include_url("https://yihui.org") ``` - + OR this: @@ -197,8 +201,8 @@ sessionInfo() ## ## loaded via a namespace (and not attached): ## [1] knitr_1.33 hms_0.5.3 R6_2.4.1 rlang_0.4.10 -## [5] httr_1.4.2 stringr_1.4.0 highr_0.8 tools_4.0.2 -## [9] xfun_0.26 jquerylib_0.1.1 htmltools_0.5.0 ellipsis_0.3.1 +## [5] stringr_1.4.0 highr_0.8 httr_1.4.2 tools_4.0.2 +## [9] webshot_0.5.2 xfun_0.26 htmltools_0.5.0 ellipsis_0.3.1 ## [13] yaml_2.2.1 leanbuild_0.1.2 digest_0.6.25 tibble_3.0.3 ## [17] lifecycle_1.0.0 crayon_1.3.4 bookdown_0.24 readr_1.4.0 ## [21] vctrs_0.3.4 fs_1.5.0 curl_4.3 evaluate_0.14 diff --git a/docs/About.md b/docs/About.md index 3cbd010d..7a275ecd 100644 --- a/docs/About.md +++ b/docs/About.md @@ -51,7 +51,7 @@ These credits are based on our [course contributors table guidelines](https://gi ## collate en_US.UTF-8 ## ctype en_US.UTF-8 ## tz Etc/UTC -## date 2021-10-28 +## date 2021-11-03 ## ## ─ Packages ─────────────────────────────────────────────────────────────────── ## package * version date lib source @@ -70,7 +70,6 @@ These credits are based on our [course contributors table guidelines](https://gi ## fs 1.5.0 2020-07-31 [1] RSPM (R 4.0.3) ## glue 1.4.2 2020-08-27 [1] RSPM (R 4.0.3) ## htmltools 0.5.0 2020-06-16 [1] RSPM (R 4.0.1) -## jquerylib 0.1.1 2020-04-30 [1] RSPM (R 4.0.0) ## knitr 1.33 2021-09-29 [1] Github (yihui/knitr@a1052d1) ## lifecycle 1.0.0 2021-02-15 [1] CRAN (R 4.0.2) ## magrittr 1.5 2014-11-22 [1] RSPM (R 4.0.0) diff --git a/docs/Course_Name.docx b/docs/Course_Name.docx index fc748beb..c82dce5e 100644 Binary files a/docs/Course_Name.docx and b/docs/Course_Name.docx differ diff --git a/docs/about-the-authors.html b/docs/about-the-authors.html index d748aa9c..e079acd1 100644 --- a/docs/about-the-authors.html +++ b/docs/about-the-authors.html @@ -355,7 +355,7 @@

About the Authors

## collate en_US.UTF-8 ## ctype en_US.UTF-8 ## tz Etc/UTC -## date 2021-10-28 +## date 2021-11-03 ## ## ─ Packages ─────────────────────────────────────────────────────────────────── ## package * version date lib source diff --git a/docs/coursera/About.md b/docs/coursera/About.md index 152a49fe..c3439493 100644 --- a/docs/coursera/About.md +++ b/docs/coursera/About.md @@ -51,7 +51,7 @@ These credits are based on our [course contributors table guidelines](https://gi ## collate en_US.UTF-8 ## ctype en_US.UTF-8 ## tz Etc/UTC -## date 2021-10-28 +## date 2021-11-03 ## ## ─ Packages ─────────────────────────────────────────────────────────────────── ## package * version date lib source diff --git a/docs/coursera/about-the-authors.html b/docs/coursera/about-the-authors.html index a11498dc..0b7a4bb7 100644 --- a/docs/coursera/about-the-authors.html +++ b/docs/coursera/about-the-authors.html @@ -355,7 +355,7 @@

About the Authors

## collate en_US.UTF-8 ## ctype en_US.UTF-8 ## tz Etc/UTC -## date 2021-10-28 +## date 2021-11-03 ## ## ─ Packages ─────────────────────────────────────────────────────────────────── ## package * version date lib source diff --git a/docs/coursera/index.html b/docs/coursera/index.html index 021fc8d2..fdb625d1 100644 --- a/docs/coursera/index.html +++ b/docs/coursera/index.html @@ -215,7 +215,7 @@

About this Course

diff --git a/docs/coursera/index.md b/docs/coursera/index.md index 55220688..8e2bf471 100644 --- a/docs/coursera/index.md +++ b/docs/coursera/index.md @@ -1,6 +1,6 @@ --- title: "Course Name " -date: "October, 2021" +date: "November, 2021" site: bookdown::bookdown_site documentclass: book bibliography: [book.bib, packages.bib] @@ -8,6 +8,9 @@ biblio-style: apalike link-citations: yes description: "Description about Course/Book." favicon: assets/dasl_favicon.ico +output: + bookdown::word_document2: + toc: true --- diff --git a/docs/coursera/search_index.json b/docs/coursera/search_index.json index 055953f5..ad0b5374 100644 --- a/docs/coursera/search_index.json +++ b/docs/coursera/search_index.json @@ -1 +1 @@ -[["index.html", "Course Name About this Course", " Course Name October, 2021 About this Course "],["introduction.html", "Chapter 1 Introduction 1.1 Motivation 1.2 Target Audience 1.3 Curriculum 1.4 Learning Objectives 1.5 Libraries", " Chapter 1 Introduction 1.1 Motivation 1.2 Target Audience The course is intended for … 1.3 Curriculum The course covers… *If you haven’t yet read the getting started Wiki pages; start there Every chapter needs to start out with this chunk of code: 1.4 Learning Objectives *Every chapter also needs Learning objectives that will look like this: This chapter will cover: {You can use https://tips.uark.edu/using-blooms-taxonomy/ to define some learning objectives here} {Another learning objective} 1.5 Libraries For this chapter, we’ll need the following packages attached: *Remember to add any additional packages you need to your course’s own docker image. library(magrittr) "],["topic-of-section.html", "Chapter 2 Topic of Section 2.1 Subtopic 2.2 Print out session info", " Chapter 2 Topic of Section You can write all your text in sections like this! 2.1 Subtopic Here’s a subheading and some text in this subsection! 2.1.1 Code examples You can demonstrate code like this: output_dir <- file.path("resources", "code_output") if (!dir.exists(output_dir)) { dir.create(output_dir) } And make plots too: hist_plot <- hist(iris$Sepal.Length) You can also save these plots to file: png(file.path(output_dir, "test_plot.png")) hist_plot ## $breaks ## [1] 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 ## ## $counts ## [1] 5 27 27 30 31 18 6 6 ## ## $density ## [1] 0.06666667 0.36000000 0.36000000 0.40000000 0.41333333 0.24000000 0.08000000 ## [8] 0.08000000 ## ## $mids ## [1] 4.25 4.75 5.25 5.75 6.25 6.75 7.25 7.75 ## ## $xname ## [1] "iris$Sepal.Length" ## ## $equidist ## [1] TRUE ## ## attr(,"class") ## [1] "histogram" dev.off() ## png ## 2 2.1.2 Image example How to include a Google slide. It’s simplest to use the leanbuild package: But if you have the slide or some other image locally downloaded you can also use html like this: 2.1.3 Video examples You can use knitr::include_url() like this: knitr::include_url("https://www.youtube.com/embed/VOCYL-FNbr0") OR this works: 2.1.4 Links to files This works: Or this: This works. Or this: 2.1.5 Links to websites Examples of including a website link. This works: knitr::include_url("https://yihui.org") OR this: Another link OR this: 2.1.6 Citation examples We can put citations at the end of a sentence like this (Allaire et al. 2021). Or multiple citations Xie, Allaire, and Grolemund (2018). but they need a ; separator (Allaire et al. 2021; Xie, Allaire, and Grolemund 2018). In text, we can put citations like this Allaire et al. (2021). 2.2 Print out session info sessionInfo() ## R version 4.0.2 (2020-06-22) ## Platform: x86_64-pc-linux-gnu (64-bit) ## Running under: Ubuntu 20.04.2 LTS ## ## Matrix products: default ## BLAS/LAPACK: /usr/lib/x86_64-linux-gnu/openblas-pthread/libopenblasp-r0.3.8.so ## ## locale: ## [1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C ## [3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8 ## [5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=C ## [7] LC_PAPER=en_US.UTF-8 LC_NAME=C ## [9] LC_ADDRESS=C LC_TELEPHONE=C ## [11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C ## ## attached base packages: ## [1] stats graphics grDevices utils datasets methods base ## ## other attached packages: ## [1] magrittr_1.5 ## ## loaded via a namespace (and not attached): ## [1] knitr_1.33 hms_0.5.3 R6_2.4.1 rlang_0.4.10 ## [5] stringr_1.4.0 highr_0.8 httr_1.4.2 tools_4.0.2 ## [9] xfun_0.26 jquerylib_0.1.1 htmltools_0.5.0 ellipsis_0.3.1 ## [13] yaml_2.2.1 leanbuild_0.1.2 digest_0.6.25 tibble_3.0.3 ## [17] lifecycle_1.0.0 crayon_1.3.4 bookdown_0.24 readr_1.4.0 ## [21] vctrs_0.3.4 fs_1.5.0 curl_4.3 evaluate_0.14 ## [25] rmarkdown_2.10 stringi_1.5.3 compiler_4.0.2 pillar_1.4.6 ## [29] pkgconfig_2.0.3 References "],["about-the-authors.html", "About the Authors", " About the Authors These credits are based on our course contributors table guidelines.     Credits Names Pedagogy Lead Content Instructor(s) FirstName LastName Lecturer(s) (include chapter name/link in parentheses if only for specific chapters) - make new line if more than one chapter involved Delivered the course in some way - video or audio Content Author(s) (include chapter name/link in parentheses if only for specific chapters) - make new line if more than one chapter involved If any other authors besides lead instructor Content Contributor(s) (include section name/link in parentheses) - make new line if more than one section involved Wrote less than a chapter Content Editor(s)/Reviewer(s) Checked your content Content Director(s) Helped guide the content direction Content Consultants (include chapter name/link in parentheses or word “General”) - make new line if more than one chapter involved Gave high level advice on content Acknowledgments Gave small assistance to content but not to the level of consulting Production Content Publisher(s) Helped with publishing platform Content Publishing Reviewer(s) Reviewed overall content and aesthetics on publishing platform Technical Course Publishing Engineer(s) Helped with the code for the technical aspects related to the specific course generation Template Publishing Engineers Candace Savonen, Carrie Wright Publishing Maintenance Engineer Candace Savonen Technical Publishing Stylists Carrie Wright, Candace Savonen Package Developers (Leanbuild) John Muschelli, Candace Savonen, Carrie Wright Art and Design Illustrator(s) Created graphics for the course Figure Artist(s) Created figures/plots for course Videographer(s) Filmed videos Videography Editor(s) Edited film Audiographer(s) Recorded audio Audiography Editor(s) Edited audio recordings Funding Funder(s) Institution/individual who funded course including grant number Funding Staff Staff members who help with funding   ## ─ Session info ─────────────────────────────────────────────────────────────── ## setting value ## version R version 4.0.2 (2020-06-22) ## os Ubuntu 20.04.2 LTS ## system x86_64, linux-gnu ## ui X11 ## language (EN) ## collate en_US.UTF-8 ## ctype en_US.UTF-8 ## tz Etc/UTC ## date 2021-10-28 ## ## ─ Packages ─────────────────────────────────────────────────────────────────── ## package * version date lib source ## assertthat 0.2.1 2019-03-21 [1] RSPM (R 4.0.3) ## backports 1.1.10 2020-09-15 [1] RSPM (R 4.0.2) ## bookdown 0.24 2021-09-29 [1] Github (rstudio/bookdown@88bc4ea) ## callr 3.4.4 2020-09-07 [1] RSPM (R 4.0.2) ## cli 2.0.2 2020-02-28 [1] RSPM (R 4.0.0) ## crayon 1.3.4 2017-09-16 [1] RSPM (R 4.0.0) ## desc 1.2.0 2018-05-01 [1] RSPM (R 4.0.3) ## devtools 2.3.2 2020-09-18 [1] RSPM (R 4.0.3) ## digest 0.6.25 2020-02-23 [1] RSPM (R 4.0.0) ## ellipsis 0.3.1 2020-05-15 [1] RSPM (R 4.0.3) ## evaluate 0.14 2019-05-28 [1] RSPM (R 4.0.3) ## fansi 0.4.1 2020-01-08 [1] RSPM (R 4.0.0) ## fs 1.5.0 2020-07-31 [1] RSPM (R 4.0.3) ## glue 1.4.2 2020-08-27 [1] RSPM (R 4.0.3) ## hms 0.5.3 2020-01-08 [1] RSPM (R 4.0.0) ## htmltools 0.5.0 2020-06-16 [1] RSPM (R 4.0.1) ## jquerylib 0.1.1 2020-04-30 [1] RSPM (R 4.0.0) ## knitr 1.33 2021-09-29 [1] Github (yihui/knitr@a1052d1) ## leanbuild 0.1.2 2021-09-29 [1] Github (jhudsl/leanbuild@dc8f933) ## lifecycle 1.0.0 2021-02-15 [1] CRAN (R 4.0.2) ## magrittr 1.5 2014-11-22 [1] RSPM (R 4.0.0) ## memoise 1.1.0 2017-04-21 [1] RSPM (R 4.0.0) ## pillar 1.4.6 2020-07-10 [1] RSPM (R 4.0.2) ## pkgbuild 1.1.0 2020-07-13 [1] RSPM (R 4.0.2) ## pkgconfig 2.0.3 2019-09-22 [1] RSPM (R 4.0.3) ## pkgload 1.1.0 2020-05-29 [1] RSPM (R 4.0.3) ## prettyunits 1.1.1 2020-01-24 [1] RSPM (R 4.0.3) ## processx 3.4.4 2020-09-03 [1] RSPM (R 4.0.2) ## ps 1.3.4 2020-08-11 [1] RSPM (R 4.0.2) ## purrr 0.3.4 2020-04-17 [1] RSPM (R 4.0.3) ## R6 2.4.1 2019-11-12 [1] RSPM (R 4.0.0) ## readr 1.4.0 2020-10-05 [1] RSPM (R 4.0.2) ## remotes 2.2.0 2020-07-21 [1] RSPM (R 4.0.3) ## rlang 0.4.10 2021-09-29 [1] Github (r-lib/rlang@f0c9be5) ## rmarkdown 2.10 2021-09-29 [1] Github (rstudio/rmarkdown@02d3c25) ## rprojroot 1.3-2 2018-01-03 [1] RSPM (R 4.0.0) ## sessioninfo 1.1.1 2018-11-05 [1] RSPM (R 4.0.3) ## stringi 1.5.3 2020-09-09 [1] RSPM (R 4.0.3) ## stringr 1.4.0 2019-02-10 [1] RSPM (R 4.0.3) ## testthat 3.0.1 2021-09-29 [1] Github (R-lib/testthat@e99155a) ## tibble 3.0.3 2020-07-10 [1] RSPM (R 4.0.2) ## usethis 2.0.1.9000 2021-09-29 [1] Github (r-lib/usethis@3398055) ## vctrs 0.3.4 2020-08-29 [1] RSPM (R 4.0.2) ## withr 2.3.0 2020-09-22 [1] RSPM (R 4.0.2) ## xfun 0.26 2021-09-29 [1] Github (yihui/xfun@74c2a66) ## yaml 2.2.1 2020-02-01 [1] RSPM (R 4.0.3) ## ## [1] /usr/local/lib/R/site-library ## [2] /usr/local/lib/R/library "],["references.html", "References", " References "],["404.html", "Page not found", " Page not found The page you requested cannot be found (perhaps it was moved or renamed). You may want to try searching to find the page's new location, or use the table of contents to find the page you are looking for. "]] +[["index.html", "Course Name About this Course", " Course Name November, 2021 About this Course "],["introduction.html", "Chapter 1 Introduction 1.1 Motivation 1.2 Target Audience 1.3 Curriculum 1.4 Learning Objectives 1.5 Libraries", " Chapter 1 Introduction 1.1 Motivation 1.2 Target Audience The course is intended for … 1.3 Curriculum The course covers… *If you haven’t yet read the getting started Wiki pages; start there Every chapter needs to start out with this chunk of code: 1.4 Learning Objectives *Every chapter also needs Learning objectives that will look like this: This chapter will cover: {You can use https://tips.uark.edu/using-blooms-taxonomy/ to define some learning objectives here} {Another learning objective} 1.5 Libraries For this chapter, we’ll need the following packages attached: *Remember to add any additional packages you need to your course’s own docker image. library(magrittr) "],["topic-of-section.html", "Chapter 2 Topic of Section 2.1 Subtopic 2.2 Print out session info", " Chapter 2 Topic of Section You can write all your text in sections like this! 2.1 Subtopic Here’s a subheading and some text in this subsection! 2.1.1 Code examples You can demonstrate code like this: output_dir <- file.path("resources", "code_output") if (!dir.exists(output_dir)) { dir.create(output_dir) } And make plots too: hist_plot <- hist(iris$Sepal.Length) You can also save these plots to file: png(file.path(output_dir, "test_plot.png")) hist_plot ## $breaks ## [1] 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 ## ## $counts ## [1] 5 27 27 30 31 18 6 6 ## ## $density ## [1] 0.06666667 0.36000000 0.36000000 0.40000000 0.41333333 0.24000000 0.08000000 ## [8] 0.08000000 ## ## $mids ## [1] 4.25 4.75 5.25 5.75 6.25 6.75 7.25 7.75 ## ## $xname ## [1] "iris$Sepal.Length" ## ## $equidist ## [1] TRUE ## ## attr(,"class") ## [1] "histogram" dev.off() ## png ## 2 2.1.2 Image example How to include a Google slide. It’s simplest to use the leanbuild package: But if you have the slide or some other image locally downloaded you can also use html like this: 2.1.3 Video examples You can use knitr::include_url() like this: knitr::include_url("https://www.youtube.com/embed/VOCYL-FNbr0") OR this works: 2.1.4 Links to files This works: Or this: This works. Or this: 2.1.5 Links to websites Examples of including a website link. This works: knitr::include_url("https://yihui.org") OR this: Another link OR this: 2.1.6 Citation examples We can put citations at the end of a sentence like this (Allaire et al. 2021). Or multiple citations Xie, Allaire, and Grolemund (2018). but they need a ; separator (Allaire et al. 2021; Xie, Allaire, and Grolemund 2018). In text, we can put citations like this Allaire et al. (2021). 2.2 Print out session info sessionInfo() ## R version 4.0.2 (2020-06-22) ## Platform: x86_64-pc-linux-gnu (64-bit) ## Running under: Ubuntu 20.04.2 LTS ## ## Matrix products: default ## BLAS/LAPACK: /usr/lib/x86_64-linux-gnu/openblas-pthread/libopenblasp-r0.3.8.so ## ## locale: ## [1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C ## [3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8 ## [5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=C ## [7] LC_PAPER=en_US.UTF-8 LC_NAME=C ## [9] LC_ADDRESS=C LC_TELEPHONE=C ## [11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C ## ## attached base packages: ## [1] stats graphics grDevices utils datasets methods base ## ## other attached packages: ## [1] magrittr_1.5 ## ## loaded via a namespace (and not attached): ## [1] knitr_1.33 hms_0.5.3 R6_2.4.1 rlang_0.4.10 ## [5] stringr_1.4.0 highr_0.8 httr_1.4.2 tools_4.0.2 ## [9] xfun_0.26 jquerylib_0.1.1 htmltools_0.5.0 ellipsis_0.3.1 ## [13] yaml_2.2.1 leanbuild_0.1.2 digest_0.6.25 tibble_3.0.3 ## [17] lifecycle_1.0.0 crayon_1.3.4 bookdown_0.24 readr_1.4.0 ## [21] vctrs_0.3.4 fs_1.5.0 curl_4.3 evaluate_0.14 ## [25] rmarkdown_2.10 stringi_1.5.3 compiler_4.0.2 pillar_1.4.6 ## [29] pkgconfig_2.0.3 References "],["about-the-authors.html", "About the Authors", " About the Authors These credits are based on our course contributors table guidelines.     Credits Names Pedagogy Lead Content Instructor(s) FirstName LastName Lecturer(s) (include chapter name/link in parentheses if only for specific chapters) - make new line if more than one chapter involved Delivered the course in some way - video or audio Content Author(s) (include chapter name/link in parentheses if only for specific chapters) - make new line if more than one chapter involved If any other authors besides lead instructor Content Contributor(s) (include section name/link in parentheses) - make new line if more than one section involved Wrote less than a chapter Content Editor(s)/Reviewer(s) Checked your content Content Director(s) Helped guide the content direction Content Consultants (include chapter name/link in parentheses or word “General”) - make new line if more than one chapter involved Gave high level advice on content Acknowledgments Gave small assistance to content but not to the level of consulting Production Content Publisher(s) Helped with publishing platform Content Publishing Reviewer(s) Reviewed overall content and aesthetics on publishing platform Technical Course Publishing Engineer(s) Helped with the code for the technical aspects related to the specific course generation Template Publishing Engineers Candace Savonen, Carrie Wright Publishing Maintenance Engineer Candace Savonen Technical Publishing Stylists Carrie Wright, Candace Savonen Package Developers (Leanbuild) John Muschelli, Candace Savonen, Carrie Wright Art and Design Illustrator(s) Created graphics for the course Figure Artist(s) Created figures/plots for course Videographer(s) Filmed videos Videography Editor(s) Edited film Audiographer(s) Recorded audio Audiography Editor(s) Edited audio recordings Funding Funder(s) Institution/individual who funded course including grant number Funding Staff Staff members who help with funding   ## ─ Session info ─────────────────────────────────────────────────────────────── ## setting value ## version R version 4.0.2 (2020-06-22) ## os Ubuntu 20.04.2 LTS ## system x86_64, linux-gnu ## ui X11 ## language (EN) ## collate en_US.UTF-8 ## ctype en_US.UTF-8 ## tz Etc/UTC ## date 2021-11-03 ## ## ─ Packages ─────────────────────────────────────────────────────────────────── ## package * version date lib source ## assertthat 0.2.1 2019-03-21 [1] RSPM (R 4.0.3) ## backports 1.1.10 2020-09-15 [1] RSPM (R 4.0.2) ## bookdown 0.24 2021-09-29 [1] Github (rstudio/bookdown@88bc4ea) ## callr 3.4.4 2020-09-07 [1] RSPM (R 4.0.2) ## cli 2.0.2 2020-02-28 [1] RSPM (R 4.0.0) ## crayon 1.3.4 2017-09-16 [1] RSPM (R 4.0.0) ## desc 1.2.0 2018-05-01 [1] RSPM (R 4.0.3) ## devtools 2.3.2 2020-09-18 [1] RSPM (R 4.0.3) ## digest 0.6.25 2020-02-23 [1] RSPM (R 4.0.0) ## ellipsis 0.3.1 2020-05-15 [1] RSPM (R 4.0.3) ## evaluate 0.14 2019-05-28 [1] RSPM (R 4.0.3) ## fansi 0.4.1 2020-01-08 [1] RSPM (R 4.0.0) ## fs 1.5.0 2020-07-31 [1] RSPM (R 4.0.3) ## glue 1.4.2 2020-08-27 [1] RSPM (R 4.0.3) ## hms 0.5.3 2020-01-08 [1] RSPM (R 4.0.0) ## htmltools 0.5.0 2020-06-16 [1] RSPM (R 4.0.1) ## jquerylib 0.1.1 2020-04-30 [1] RSPM (R 4.0.0) ## knitr 1.33 2021-09-29 [1] Github (yihui/knitr@a1052d1) ## leanbuild 0.1.2 2021-09-29 [1] Github (jhudsl/leanbuild@dc8f933) ## lifecycle 1.0.0 2021-02-15 [1] CRAN (R 4.0.2) ## magrittr 1.5 2014-11-22 [1] RSPM (R 4.0.0) ## memoise 1.1.0 2017-04-21 [1] RSPM (R 4.0.0) ## pillar 1.4.6 2020-07-10 [1] RSPM (R 4.0.2) ## pkgbuild 1.1.0 2020-07-13 [1] RSPM (R 4.0.2) ## pkgconfig 2.0.3 2019-09-22 [1] RSPM (R 4.0.3) ## pkgload 1.1.0 2020-05-29 [1] RSPM (R 4.0.3) ## prettyunits 1.1.1 2020-01-24 [1] RSPM (R 4.0.3) ## processx 3.4.4 2020-09-03 [1] RSPM (R 4.0.2) ## ps 1.3.4 2020-08-11 [1] RSPM (R 4.0.2) ## purrr 0.3.4 2020-04-17 [1] RSPM (R 4.0.3) ## R6 2.4.1 2019-11-12 [1] RSPM (R 4.0.0) ## readr 1.4.0 2020-10-05 [1] RSPM (R 4.0.2) ## remotes 2.2.0 2020-07-21 [1] RSPM (R 4.0.3) ## rlang 0.4.10 2021-09-29 [1] Github (r-lib/rlang@f0c9be5) ## rmarkdown 2.10 2021-09-29 [1] Github (rstudio/rmarkdown@02d3c25) ## rprojroot 1.3-2 2018-01-03 [1] RSPM (R 4.0.0) ## sessioninfo 1.1.1 2018-11-05 [1] RSPM (R 4.0.3) ## stringi 1.5.3 2020-09-09 [1] RSPM (R 4.0.3) ## stringr 1.4.0 2019-02-10 [1] RSPM (R 4.0.3) ## testthat 3.0.1 2021-09-29 [1] Github (R-lib/testthat@e99155a) ## tibble 3.0.3 2020-07-10 [1] RSPM (R 4.0.2) ## usethis 2.0.1.9000 2021-09-29 [1] Github (r-lib/usethis@3398055) ## vctrs 0.3.4 2020-08-29 [1] RSPM (R 4.0.2) ## withr 2.3.0 2020-09-22 [1] RSPM (R 4.0.2) ## xfun 0.26 2021-09-29 [1] Github (yihui/xfun@74c2a66) ## yaml 2.2.1 2020-02-01 [1] RSPM (R 4.0.3) ## ## [1] /usr/local/lib/R/site-library ## [2] /usr/local/lib/R/library "],["references.html", "References", " References "],["404.html", "Page not found", " Page not found The page you requested cannot be found (perhaps it was moved or renamed). You may want to try searching to find the page's new location, or use the table of contents to find the page you are looking for. "]] diff --git a/docs/index.html b/docs/index.html index 021fc8d2..fdb625d1 100644 --- a/docs/index.html +++ b/docs/index.html @@ -215,7 +215,7 @@

About this Course

diff --git a/docs/index.md b/docs/index.md index 55220688..8e2bf471 100644 --- a/docs/index.md +++ b/docs/index.md @@ -1,6 +1,6 @@ --- title: "Course Name " -date: "October, 2021" +date: "November, 2021" site: bookdown::bookdown_site documentclass: book bibliography: [book.bib, packages.bib] @@ -8,6 +8,9 @@ biblio-style: apalike link-citations: yes description: "Description about Course/Book." favicon: assets/dasl_favicon.ico +output: + bookdown::word_document2: + toc: true --- diff --git a/docs/search_index.json b/docs/search_index.json index ae29103e..a04b2f42 100644 --- a/docs/search_index.json +++ b/docs/search_index.json @@ -1 +1 @@ -[["index.html", "Course Name About this Course", " Course Name October, 2021 About this Course "],["introduction.html", "Chapter 1 Introduction 1.1 Motivation 1.2 Target Audience 1.3 Curriculum 1.4 Learning Objectives 1.5 Libraries", " Chapter 1 Introduction 1.1 Motivation 1.2 Target Audience The course is intended for … 1.3 Curriculum The course covers… *If you haven’t yet read the getting started Wiki pages; start there Every chapter needs to start out with this chunk of code: 1.4 Learning Objectives *Every chapter also needs Learning objectives that will look like this: This chapter will cover: {You can use https://tips.uark.edu/using-blooms-taxonomy/ to define some learning objectives here} {Another learning objective} 1.5 Libraries For this chapter, we’ll need the following packages attached: *Remember to add any additional packages you need to your course’s own docker image. library(magrittr) "],["topic-of-section.html", "Chapter 2 Topic of Section 2.1 Subtopic 2.2 Print out session info", " Chapter 2 Topic of Section You can write all your text in sections like this! 2.1 Subtopic Here’s a subheading and some text in this subsection! 2.1.1 Code examples You can demonstrate code like this: output_dir <- file.path("resources", "code_output") if (!dir.exists(output_dir)) { dir.create(output_dir) } And make plots too: hist_plot <- hist(iris$Sepal.Length) You can also save these plots to file: png(file.path(output_dir, "test_plot.png")) hist_plot ## $breaks ## [1] 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 ## ## $counts ## [1] 5 27 27 30 31 18 6 6 ## ## $density ## [1] 0.06666667 0.36000000 0.36000000 0.40000000 0.41333333 0.24000000 0.08000000 ## [8] 0.08000000 ## ## $mids ## [1] 4.25 4.75 5.25 5.75 6.25 6.75 7.25 7.75 ## ## $xname ## [1] "iris$Sepal.Length" ## ## $equidist ## [1] TRUE ## ## attr(,"class") ## [1] "histogram" dev.off() ## png ## 2 2.1.2 Image example How to include a Google slide. It’s simplest to use the leanbuild package: But if you have the slide or some other image locally downloaded you can also use html like this: 2.1.3 Video examples You can use knitr::include_url() like this: knitr::include_url("https://www.youtube.com/embed/VOCYL-FNbr0") OR this works: 2.1.4 Links to files This works: Or this: This works. Or this: 2.1.5 Links to websites Examples of including a website link. This works: knitr::include_url("https://yihui.org") OR this: Another link OR this: 2.1.6 Citation examples We can put citations at the end of a sentence like this (Allaire et al. 2021). Or multiple citations Xie, Allaire, and Grolemund (2018). but they need a ; separator (Allaire et al. 2021; Xie, Allaire, and Grolemund 2018). In text, we can put citations like this Allaire et al. (2021). 2.2 Print out session info sessionInfo() ## R version 4.0.2 (2020-06-22) ## Platform: x86_64-pc-linux-gnu (64-bit) ## Running under: Ubuntu 20.04.2 LTS ## ## Matrix products: default ## BLAS/LAPACK: /usr/lib/x86_64-linux-gnu/openblas-pthread/libopenblasp-r0.3.8.so ## ## locale: ## [1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C ## [3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8 ## [5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=C ## [7] LC_PAPER=en_US.UTF-8 LC_NAME=C ## [9] LC_ADDRESS=C LC_TELEPHONE=C ## [11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C ## ## attached base packages: ## [1] stats graphics grDevices utils datasets methods base ## ## other attached packages: ## [1] magrittr_1.5 ## ## loaded via a namespace (and not attached): ## [1] knitr_1.33 hms_0.5.3 R6_2.4.1 rlang_0.4.10 ## [5] httr_1.4.2 stringr_1.4.0 highr_0.8 tools_4.0.2 ## [9] xfun_0.26 jquerylib_0.1.1 htmltools_0.5.0 ellipsis_0.3.1 ## [13] yaml_2.2.1 leanbuild_0.1.2 digest_0.6.25 tibble_3.0.3 ## [17] lifecycle_1.0.0 crayon_1.3.4 bookdown_0.24 readr_1.4.0 ## [21] vctrs_0.3.4 fs_1.5.0 curl_4.3 evaluate_0.14 ## [25] rmarkdown_2.10 stringi_1.5.3 compiler_4.0.2 pillar_1.4.6 ## [29] pkgconfig_2.0.3 References "],["about-the-authors.html", "About the Authors", " About the Authors These credits are based on our course contributors table guidelines.     Credits Names Pedagogy Lead Content Instructor(s) FirstName LastName Lecturer(s) (include chapter name/link in parentheses if only for specific chapters) - make new line if more than one chapter involved Delivered the course in some way - video or audio Content Author(s) (include chapter name/link in parentheses if only for specific chapters) - make new line if more than one chapter involved If any other authors besides lead instructor Content Contributor(s) (include section name/link in parentheses) - make new line if more than one section involved Wrote less than a chapter Content Editor(s)/Reviewer(s) Checked your content Content Director(s) Helped guide the content direction Content Consultants (include chapter name/link in parentheses or word “General”) - make new line if more than one chapter involved Gave high level advice on content Acknowledgments Gave small assistance to content but not to the level of consulting Production Content Publisher(s) Helped with publishing platform Content Publishing Reviewer(s) Reviewed overall content and aesthetics on publishing platform Technical Course Publishing Engineer(s) Helped with the code for the technical aspects related to the specific course generation Template Publishing Engineers Candace Savonen, Carrie Wright Publishing Maintenance Engineer Candace Savonen Technical Publishing Stylists Carrie Wright, Candace Savonen Package Developers (Leanbuild) John Muschelli, Candace Savonen, Carrie Wright Art and Design Illustrator(s) Created graphics for the course Figure Artist(s) Created figures/plots for course Videographer(s) Filmed videos Videography Editor(s) Edited film Audiographer(s) Recorded audio Audiography Editor(s) Edited audio recordings Funding Funder(s) Institution/individual who funded course including grant number Funding Staff Staff members who help with funding   ## ─ Session info ─────────────────────────────────────────────────────────────── ## setting value ## version R version 4.0.2 (2020-06-22) ## os Ubuntu 20.04.2 LTS ## system x86_64, linux-gnu ## ui X11 ## language (EN) ## collate en_US.UTF-8 ## ctype en_US.UTF-8 ## tz Etc/UTC ## date 2021-10-28 ## ## ─ Packages ─────────────────────────────────────────────────────────────────── ## package * version date lib source ## assertthat 0.2.1 2019-03-21 [1] RSPM (R 4.0.3) ## backports 1.1.10 2020-09-15 [1] RSPM (R 4.0.2) ## bookdown 0.24 2021-09-29 [1] Github (rstudio/bookdown@88bc4ea) ## callr 3.4.4 2020-09-07 [1] RSPM (R 4.0.2) ## cli 2.0.2 2020-02-28 [1] RSPM (R 4.0.0) ## crayon 1.3.4 2017-09-16 [1] RSPM (R 4.0.0) ## desc 1.2.0 2018-05-01 [1] RSPM (R 4.0.3) ## devtools 2.3.2 2020-09-18 [1] RSPM (R 4.0.3) ## digest 0.6.25 2020-02-23 [1] RSPM (R 4.0.0) ## ellipsis 0.3.1 2020-05-15 [1] RSPM (R 4.0.3) ## evaluate 0.14 2019-05-28 [1] RSPM (R 4.0.3) ## fansi 0.4.1 2020-01-08 [1] RSPM (R 4.0.0) ## fs 1.5.0 2020-07-31 [1] RSPM (R 4.0.3) ## glue 1.4.2 2020-08-27 [1] RSPM (R 4.0.3) ## htmltools 0.5.0 2020-06-16 [1] RSPM (R 4.0.1) ## jquerylib 0.1.1 2020-04-30 [1] RSPM (R 4.0.0) ## knitr 1.33 2021-09-29 [1] Github (yihui/knitr@a1052d1) ## lifecycle 1.0.0 2021-02-15 [1] CRAN (R 4.0.2) ## magrittr 1.5 2014-11-22 [1] RSPM (R 4.0.0) ## memoise 1.1.0 2017-04-21 [1] RSPM (R 4.0.0) ## pkgbuild 1.1.0 2020-07-13 [1] RSPM (R 4.0.2) ## pkgload 1.1.0 2020-05-29 [1] RSPM (R 4.0.3) ## prettyunits 1.1.1 2020-01-24 [1] RSPM (R 4.0.3) ## processx 3.4.4 2020-09-03 [1] RSPM (R 4.0.2) ## ps 1.3.4 2020-08-11 [1] RSPM (R 4.0.2) ## purrr 0.3.4 2020-04-17 [1] RSPM (R 4.0.3) ## R6 2.4.1 2019-11-12 [1] RSPM (R 4.0.0) ## remotes 2.2.0 2020-07-21 [1] RSPM (R 4.0.3) ## rlang 0.4.10 2021-09-29 [1] Github (r-lib/rlang@f0c9be5) ## rmarkdown 2.10 2021-09-29 [1] Github (rstudio/rmarkdown@02d3c25) ## rprojroot 1.3-2 2018-01-03 [1] RSPM (R 4.0.0) ## sessioninfo 1.1.1 2018-11-05 [1] RSPM (R 4.0.3) ## stringi 1.5.3 2020-09-09 [1] RSPM (R 4.0.3) ## stringr 1.4.0 2019-02-10 [1] RSPM (R 4.0.3) ## testthat 3.0.1 2021-09-29 [1] Github (R-lib/testthat@e99155a) ## usethis 2.0.1.9000 2021-09-29 [1] Github (r-lib/usethis@3398055) ## withr 2.3.0 2020-09-22 [1] RSPM (R 4.0.2) ## xfun 0.26 2021-09-29 [1] Github (yihui/xfun@74c2a66) ## yaml 2.2.1 2020-02-01 [1] RSPM (R 4.0.3) ## ## [1] /usr/local/lib/R/site-library ## [2] /usr/local/lib/R/library "],["references.html", "References", " References "],["404.html", "Page not found", " Page not found The page you requested cannot be found (perhaps it was moved or renamed). You may want to try searching to find the page's new location, or use the table of contents to find the page you are looking for. "]] +[["index.html", "Course Name About this Course", " Course Name November, 2021 About this Course "],["introduction.html", "Chapter 1 Introduction 1.1 Motivation 1.2 Target Audience 1.3 Curriculum 1.4 Learning Objectives 1.5 Libraries", " Chapter 1 Introduction 1.1 Motivation 1.2 Target Audience The course is intended for … 1.3 Curriculum The course covers… *If you haven’t yet read the getting started Wiki pages; start there Every chapter needs to start out with this chunk of code: 1.4 Learning Objectives *Every chapter also needs Learning objectives that will look like this: This chapter will cover: {You can use https://tips.uark.edu/using-blooms-taxonomy/ to define some learning objectives here} {Another learning objective} 1.5 Libraries For this chapter, we’ll need the following packages attached: *Remember to add any additional packages you need to your course’s own docker image. library(magrittr) "],["topic-of-section.html", "Chapter 2 Topic of Section 2.1 Subtopic 2.2 Print out session info", " Chapter 2 Topic of Section You can write all your text in sections like this! 2.1 Subtopic Here’s a subheading and some text in this subsection! 2.1.1 Code examples You can demonstrate code like this: output_dir <- file.path("resources", "code_output") if (!dir.exists(output_dir)) { dir.create(output_dir) } And make plots too: hist_plot <- hist(iris$Sepal.Length) You can also save these plots to file: png(file.path(output_dir, "test_plot.png")) hist_plot ## $breaks ## [1] 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 ## ## $counts ## [1] 5 27 27 30 31 18 6 6 ## ## $density ## [1] 0.06666667 0.36000000 0.36000000 0.40000000 0.41333333 0.24000000 0.08000000 ## [8] 0.08000000 ## ## $mids ## [1] 4.25 4.75 5.25 5.75 6.25 6.75 7.25 7.75 ## ## $xname ## [1] "iris$Sepal.Length" ## ## $equidist ## [1] TRUE ## ## attr(,"class") ## [1] "histogram" dev.off() ## png ## 2 2.1.2 Image example How to include a Google slide. It’s simplest to use the leanbuild package: But if you have the slide or some other image locally downloaded you can also use html like this: 2.1.3 Video examples You can use knitr::include_url() like this: knitr::include_url("https://www.youtube.com/embed/VOCYL-FNbr0") OR this works: 2.1.4 Links to files This works: Or this: This works. Or this: 2.1.5 Links to websites Examples of including a website link. This works: knitr::include_url("https://yihui.org") OR this: Another link OR this: 2.1.6 Citation examples We can put citations at the end of a sentence like this (Allaire et al. 2021). Or multiple citations Xie, Allaire, and Grolemund (2018). but they need a ; separator (Allaire et al. 2021; Xie, Allaire, and Grolemund 2018). In text, we can put citations like this Allaire et al. (2021). 2.2 Print out session info sessionInfo() ## R version 4.0.2 (2020-06-22) ## Platform: x86_64-pc-linux-gnu (64-bit) ## Running under: Ubuntu 20.04.2 LTS ## ## Matrix products: default ## BLAS/LAPACK: /usr/lib/x86_64-linux-gnu/openblas-pthread/libopenblasp-r0.3.8.so ## ## locale: ## [1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C ## [3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8 ## [5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=C ## [7] LC_PAPER=en_US.UTF-8 LC_NAME=C ## [9] LC_ADDRESS=C LC_TELEPHONE=C ## [11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C ## ## attached base packages: ## [1] stats graphics grDevices utils datasets methods base ## ## other attached packages: ## [1] magrittr_1.5 ## ## loaded via a namespace (and not attached): ## [1] knitr_1.33 hms_0.5.3 R6_2.4.1 rlang_0.4.10 ## [5] httr_1.4.2 stringr_1.4.0 highr_0.8 tools_4.0.2 ## [9] xfun_0.26 jquerylib_0.1.1 htmltools_0.5.0 ellipsis_0.3.1 ## [13] yaml_2.2.1 leanbuild_0.1.2 digest_0.6.25 tibble_3.0.3 ## [17] lifecycle_1.0.0 crayon_1.3.4 bookdown_0.24 readr_1.4.0 ## [21] vctrs_0.3.4 fs_1.5.0 curl_4.3 evaluate_0.14 ## [25] rmarkdown_2.10 stringi_1.5.3 compiler_4.0.2 pillar_1.4.6 ## [29] pkgconfig_2.0.3 References "],["about-the-authors.html", "About the Authors", " About the Authors These credits are based on our course contributors table guidelines.     Credits Names Pedagogy Lead Content Instructor(s) FirstName LastName Lecturer(s) (include chapter name/link in parentheses if only for specific chapters) - 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