dada2_SSU_hpcc.sb

#!/bin/bash --login
########## Define Resources Needed with SBATCH Lines ##########

#SBATCH --time=160:00:00   # limit of wall clock time - how long the job will run
#SBATCH --ntasks=1       # number of tasks - how many tasks (nodes) that you require
#SBATCH --cpus-per-task=16  # number of CPUs (or cores) per task (same as -c)
#SBATCH --mem=160G      # memory required per node - amount of memory (in bytes)
#SBATCH --job-name dada2SSU   # you can give your job a name for easier identification
#SBATCH --account shadeash-colej           # give a running priority for your job
#SBATCH --mail-user=jihoonyang0113@gmail.com  # enter your email address
#SBATCH --mail-type=BEGIN,END,FAIL  # will receive an email when job starts, ends, fails

########## Command Lines to Run ##########

### load necessary modules, e.g.
module purge; module load GCC/8.3.0 OpenMPI/3.1.4 R/4.0.2 UDUNITS/2.2.26
module load R

### change to the directory where your code is located
cd /mnt/scratch/f0008425/SSU

### call your executable
Rscript dada2_SSU_hpcc.R

scontrol show job $SLURM_JOB_ID     ### write job information to output file