demo/create_samples.ipynb

{
 "cells": [
  {
   "cell_type": "markdown",
   "id": "6d329258-7ec0-413f-ba69-dc8b375fd4a6",
   "metadata": {},
   "source": [
    "# Create samples from LLMs / endpoints\n",
    "In this notebook we ask LLMs to produce samples using given prompts. Results are saved as \"samples_....json\" files."
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 1,
   "id": "ad39f74d-59a7-452d-a58a-22733972468c",
   "metadata": {},
   "outputs": [],
   "source": [
    "from human_eval.data import write_jsonl, read_problems"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 2,
   "id": "53ee967e-c0ed-4327-93f4-1ba85e0139bd",
   "metadata": {},
   "outputs": [],
   "source": [
    "directory = \"../data/\"\n",
    "problem_file = 'human-eval-bia.jsonl'\n",
    "num_samples_per_task = 10"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 3,
   "id": "b19eea9c-ed76-4ea1-b855-875578e562d9",
   "metadata": {},
   "outputs": [],
   "source": [
    "use_reference = True\n",
    "use_gpt35 = True\n",
    "use_gpt4 = True\n",
    "use_gpt4_20240409 = True\n",
    "use_ollama_codellama = True\n",
    "use_blablador_mistral = False\n",
    "use_gemini_pro = True\n",
    "use_gemini_15_pro = False\n",
    "use_gemini_ultra = False\n",
    "use_claude = True"
   ]
  },
  {
   "cell_type": "markdown",
   "id": "03910e60-ea98-4d44-90aa-f487ee839510",
   "metadata": {},
   "source": [
    "## Helper functions"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 4,
   "id": "005dc6b0-8b18-4d4c-b7b4-dc59799c99ba",
   "metadata": {},
   "outputs": [],
   "source": [
    "def setup_prompt(input_code):\n",
    "    prompt = f\"\"\"Complete the following code. \n",
    "    First, write down a plan as comments how to solve the problem step-by-step.\n",
    "    Then, import the python libraries you think you will use.\n",
    "    Then, write the function you were asked for.\n",
    "    Write python code only.\n",
    "    Do NOT write any code for testing the function.\n",
    "    Return the complete code including my code.\n",
    "\n",
    "```python\n",
    "{input_code}\n",
    "```\n",
    "    \"\"\"\n",
    "    return prompt"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 5,
   "id": "824f29ac-4603-438c-8101-1ee0c0309994",
   "metadata": {},
   "outputs": [],
   "source": [
    "def extract_python(response):\n",
    "\n",
    "    if '[PYTHON]' in response and '[/PYTHON]' in response:\n",
    "        response = response.replace('[PYTHON]', '```')\n",
    "        response = response.replace('[/PYTHON]', '```')\n",
    "        \n",
    "    if '```' in response:\n",
    "        response = response.replace('```python', '```')\n",
    "        temp = response.split('```')\n",
    "        for i in range(0, len(temp), 2):\n",
    "            temp[i] = \"\"\n",
    "        response = \"\".join(temp)\n",
    "    \n",
    "    return response"
   ]
  },
  {
   "cell_type": "markdown",
   "id": "a936d83a-a405-4cab-9176-5c9379a153d1",
   "metadata": {},
   "source": [
    "## Models"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 6,
   "id": "3c7e637e-1100-4fbd-98ee-8853976f7df2",
   "metadata": {},
   "outputs": [],
   "source": [
    "code_generators = {}"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 7,
   "id": "42bc7ec5-4349-42ee-bd65-4d66fc24b6eb",
   "metadata": {},
   "outputs": [],
   "source": [
    "if use_reference:\n",
    "    # actually not a model, but to the evaluation framework it appears like:\n",
    "    model_reference = 'reference'\n",
    "    problems_data = read_problems(directory + problem_file)\n",
    "\n",
    "    def generate_reference(input_code):\n",
    "        # This is a computationally wasteful solution, \n",
    "        # but like this it fits well in the framework\n",
    "        for task_id, problem in problems_data.items():\n",
    "            if problem['prompt'] == input_code:\n",
    "                return problem['canonical_solution']\n",
    "    \n",
    "    code_generators[model_reference] = generate_reference"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 8,
   "id": "fc6a33cd-0401-4a7f-a4ef-6f1b72a03c12",
   "metadata": {},
   "outputs": [],
   "source": [
    "if use_gpt35:\n",
    "    model_gpt35 = \"gpt-3.5-turbo-1106\"\n",
    "    def generate_one_completion_gpt35(input_code):\n",
    "        import openai\n",
    "        client = openai.OpenAI()\n",
    "        response = client.chat.completions.create(\n",
    "            model=model_gpt35,\n",
    "            messages=[{\"role\": \"user\", \"content\": setup_prompt(input_code)}],\n",
    "        )\n",
    "        return response.choices[0].message.content.strip()\n",
    "\n",
    "    code_generators[model_gpt35] = generate_one_completion_gpt35"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 9,
   "id": "39e92e34-c5f6-497c-8860-2664d302efff",
   "metadata": {},
   "outputs": [],
   "source": [
    "if use_gpt4_20240409:\n",
    "    model_gpt4_20240409 = \"gpt-4-turbo-2024-04-09\"\n",
    "    def generate_one_completion_gpt4_20240409(input_code):\n",
    "        import openai\n",
    "        client = openai.OpenAI()\n",
    "        response = client.chat.completions.create(\n",
    "            model=model_gpt4_20240409,\n",
    "            messages=[{\"role\": \"user\", \"content\": setup_prompt(input_code)}],\n",
    "        )\n",
    "        return response.choices[0].message.content.strip()\n",
    "        \n",
    "    code_generators[model_gpt4_20240409] = generate_one_completion_gpt4_20240409"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 10,
   "id": "cf98338b-6535-43ec-99f7-936e0072585e",
   "metadata": {},
   "outputs": [],
   "source": [
    "if use_gpt4:\n",
    "    model_gpt4 = \"gpt-4-1106-preview\"\n",
    "    def generate_one_completion_gpt4(input_code):\n",
    "        import openai\n",
    "        client = openai.OpenAI()\n",
    "        response = client.chat.completions.create(\n",
    "            model=model_gpt4,\n",
    "            messages=[{\"role\": \"user\", \"content\": setup_prompt(input_code)}],\n",
    "        )\n",
    "        return response.choices[0].message.content.strip()\n",
    "        \n",
    "    code_generators[model_gpt4] = generate_one_completion_gpt4"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 11,
   "id": "c228a55c-895e-43b9-8721-c4c62a93c6d2",
   "metadata": {},
   "outputs": [],
   "source": [
    "if use_ollama_codellama:\n",
    "    model_ollama_codellama = \"codellama\"\n",
    "    def generate_one_completion_codellama(input_code):\n",
    "        import openai\n",
    "        \n",
    "        client = openai.OpenAI()\n",
    "        client.base_url = 'http://localhost:11434/v1'\n",
    "        response = client.chat.completions.create(\n",
    "            model=model_ollama_codellama,\n",
    "            messages=[{\"role\": \"user\", \"content\": setup_prompt(input_code)}],\n",
    "        )\n",
    "        return response.choices[0].message.content.strip()\n",
    "\n",
    "    code_generators[model_ollama_codellama] = generate_one_completion_codellama"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 12,
   "id": "924d9691-3c00-447e-98d6-8c6a7e8c862a",
   "metadata": {},
   "outputs": [],
   "source": [
    "if use_blablador_mistral:\n",
    "    model_blablador_mistral = \"Mistral-7B-Instruct-v0.2\"\n",
    "    def generate_one_completion_blablador_mistral(input_code):\n",
    "        import openai\n",
    "        import os\n",
    "\n",
    "        client = openai.OpenAI()\n",
    "        client.base_url = 'https://helmholtz-blablador.fz-juelich.de:8000/v1'\n",
    "        client.api_key = os.environ.get('BLABLADOR_API_KEY')\n",
    "        response = client.chat.completions.create(\n",
    "            model=model_blablador_mistral,\n",
    "            messages=[{\"role\": \"user\", \"content\": setup_prompt(input_code)}],\n",
    "        )\n",
    "        return response.choices[0].message.content.strip()\n",
    "\n",
    "    code_generators[model_blablador_mistral] = generate_one_completion_blablador_mistral"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 13,
   "id": "6fda77d0-af78-4712-ac47-b82490c542c7",
   "metadata": {},
   "outputs": [],
   "source": [
    "if use_gemini_pro:\n",
    "    model_gemini_pro = 'gemini-pro'\n",
    "    \n",
    "    def generate_one_completion_gemini_pro(input_code):\n",
    "        from vertexai.preview.generative_models import (\n",
    "            GenerationConfig,\n",
    "            GenerativeModel,\n",
    "            Image,\n",
    "            Part,\n",
    "            ChatSession,\n",
    "        )\n",
    "        gemini_model = GenerativeModel(model_gemini_pro)\n",
    "        client = gemini_model.start_chat()\n",
    "        response = client.send_message(setup_prompt(input_code)).text\n",
    "\n",
    "        return response\n",
    "\n",
    "    code_generators[model_gemini_pro] = generate_one_completion_gemini_pro"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 14,
   "id": "bb342866-3ac8-4077-a2a6-6369493b57fb",
   "metadata": {},
   "outputs": [],
   "source": [
    "if use_gemini_15_pro:\n",
    "    model_gemini_15_pro = 'gemini-1.5-pro-latest'\n",
    "\n",
    "    def generate_one_completion_gemini_15_pro(input_code):\n",
    "        from google import generativeai as genai\n",
    "        import os\n",
    "        genai.configure(api_key=os.environ['GOOGLE_API_KEY'])\n",
    "        client = genai.GenerativeModel(model_gemini_15_pro)\n",
    "        result = client.generate_content(setup_prompt(input_code))\n",
    "        return result.text\n",
    "        \n",
    "    code_generators[model_gemini_15_pro] = generate_one_completion_gemini_15_pro"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 15,
   "id": "c4605995-2db8-4315-a11c-a3f5345d75d4",
   "metadata": {},
   "outputs": [],
   "source": [
    "if use_gemini_ultra:\n",
    "    model_gemini_ultra = 'gemini-ultra'\n",
    "\n",
    "    def generate_one_completion_gemini_ultra(input_code):\n",
    "        from google import generativeai as genai\n",
    "        import os\n",
    "        genai.configure(api_key=os.environ['GOOGLE_API_KEY'])\n",
    "        client = genai.GenerativeModel(model_gemini_ultra)\n",
    "        result = client.generate_content(setup_prompt(input_code))\n",
    "        return result.text\n",
    "        \n",
    "    code_generators[model_gemini_ultra] = generate_one_completion_gemini_ultra"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 16,
   "id": "d2ebd867-e57f-4a18-9749-06e21c83edbf",
   "metadata": {},
   "outputs": [],
   "source": [
    "if use_claude:\n",
    "    model_claude = \"claude-3-opus-20240229\"\n",
    "\n",
    "    def generate_one_completion_claude(input_code):\n",
    "        #import os\n",
    "        from anthropic import Anthropic\n",
    "        \n",
    "        client = Anthropic(\n",
    "            # This is the default and can be omitted\n",
    "            #api_key=os.environ.get(\"ANTHROPIC_API_KEY\"),\n",
    "        )\n",
    "        \n",
    "        message = client.messages.create(\n",
    "            max_tokens=1024,\n",
    "            messages=[\n",
    "                {\n",
    "                    \"role\": \"user\",\n",
    "                    \"content\": setup_prompt(input_code),\n",
    "                }\n",
    "            ],\n",
    "            model=model_claude,\n",
    "        )\n",
    "        return message.content[0].text\n",
    "    code_generators[model_claude] = generate_one_completion_claude"
   ]
  },
  {
   "cell_type": "markdown",
   "id": "8c7f9051-6e0c-4ccf-9e03-fa2b9af88589",
   "metadata": {},
   "source": [
    "## Sanity check"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 17,
   "id": "e14dd9c9-4c96-409d-8ab8-4af0f6738f8b",
   "metadata": {},
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "reference None\n",
      "gpt-3.5-turbo-1106 ```python\n",
      "# Plan:\n",
      "# 1. Define a function named print_hello_world.\n",
      "# 2. Inside the function, print \"Hello, World!\".\n",
      "\n",
      "def print_hello_world():\n",
      "    print(\"Hello, World!\")\n",
      "```\n",
      "gpt-4-turbo-2024-04-09 ```python\n",
      "# Plan:\n",
      "# - Simply print \"Hello, World!\" as the requirement of the function is just to display this text.\n",
      "\n",
      "# No external libraries are needed for this function.\n",
      "\n",
      "def print_hello_world():\n",
      "    print(\"Hello, World!\")\n",
      "```\n",
      "gpt-4-1106-preview ```python\n",
      "# Plan:\n",
      "# Step 1: Define the function print_hello_world\n",
      "# Step 2: Inside the function, print \"Hello, World!\"\n",
      "\n",
      "# Import necessary libraries\n",
      "# (In this case, no import is necessary for the task)\n",
      "\n",
      "# Define the function\n",
      "def print_hello_world():\n",
      "    # Step 2: Print the message\n",
      "    print(\"Hello, World!\")\n",
      "\n",
      "# Note: There is no need to import any library for this simple function.\n",
      "```\n",
      "codellama Plan:\n",
      "\n",
      "1. Define a function `print_hello_world` that takes no arguments and returns nothing.\n",
      "2. Inside the function, use the `print()` function to print \"Hello World!\" to the console.\n",
      "\n",
      "Code:\n",
      "```python\n",
      "def print_hello_world():\n",
      "    print(\"Hello World!\")\n",
      "```\n",
      "Note: This code will print \"Hello World!\" to the console when the function is called.\n",
      "gemini-pro ```python\n",
      "# Step 1: Define the function print_hello_world()\n",
      "def print_hello_world():\n",
      "\n",
      "    # Step 2: Print the string \"Hello, World!\" to the console\n",
      "    print(\"Hello, World!\")\n",
      "\n",
      "```\n",
      "claude-3-opus-20240229 Here's the completed code:\n",
      "\n",
      "```python\n",
      "# Plan:\n",
      "# 1. Define the function print_hello_world().\n",
      "# 2. Inside the function, use the print() function to print \"Hello, World!\".\n",
      "\n",
      "# No additional libraries needed for this simple function.\n",
      "\n",
      "def print_hello_world():\n",
      "    print(\"Hello, World!\")\n",
      "```\n"
     ]
    }
   ],
   "source": [
    "for key, func in code_generators.items():\n",
    "    print(key, func(\"def print_hello_world():\\n\"))"
   ]
  },
  {
   "cell_type": "markdown",
   "id": "8e63a329-c2e7-4f04-9e89-399605c3963c",
   "metadata": {},
   "source": [
    "## Sampling"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 18,
   "id": "f0d7ccad-0e34-4790-ad5e-7898c0b0223a",
   "metadata": {},
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "reference ../test_cases/apply_otsu_threshold_and_count_postiive_pixels.ipynb 0\n",
      "reference ../test_cases/binary_closing.ipynb 0\n",
      "reference ../test_cases/binary_skeleton.ipynb 0\n",
      "reference ../test_cases/bland_altman.ipynb 0\n",
      "reference ../test_cases/combine_columns_of_tables.ipynb 0\n",
      "reference ../test_cases/convex_hull_measure_area.ipynb 0\n",
      "reference ../test_cases/convolve_images.ipynb 0\n",
      "reference ../test_cases/count_number_of_touching_neighbors.ipynb 0\n",
      "reference ../test_cases/count_objects_over_time.ipynb 0\n",
      "reference ../test_cases/count_overlapping_regions.ipynb 0\n",
      "reference ../test_cases/create_umap.ipynb 0\n",
      "reference ../test_cases/crop_quarter_image.ipynb 0\n",
      "reference ../test_cases/deconvolve_image.ipynb 0\n",
      "reference ../test_cases/detect_edges.ipynb 0\n",
      "reference ../test_cases/expand_labels_without_overlap.ipynb 0\n",
      "reference ../test_cases/extract_surface_measure_area.ipynb 0\n",
      "reference ../test_cases/fit_circle.ipynb 0\n",
      "reference ../test_cases/label_binary_image_and_count_labels.ipynb 0\n",
      "reference ../test_cases/label_sequentially.ipynb 0\n",
      "reference ../test_cases/list_image_files_in_folder.ipynb 0\n",
      "reference ../test_cases/map_pixel_count_of_labels.ipynb 0\n",
      "reference ../test_cases/mask_image.ipynb 0\n",
      "reference ../test_cases/maximum_intensity_projection.ipynb 0\n",
      "reference ../test_cases/mean_squared_error.ipynb 0\n",
      "reference ../test_cases/mean_std_column.ipynb 0\n",
      "reference ../test_cases/measure_aspect_ratio_of_regions.ipynb 0\n",
      "reference ../test_cases/measure_intensity_of_labels.ipynb 0\n",
      "reference ../test_cases/measure_intensity_over_time.ipynb 0\n",
      "reference ../test_cases/measure_mean_image_intensity.ipynb 0\n",
      "reference ../test_cases/measure_pixel_count_of_labels.ipynb 0\n",
      "reference ../test_cases/measure_properties_of_regions.ipynb 0\n",
      "reference ../test_cases/open_image_read_voxel_size.ipynb 0\n",
      "reference ../test_cases/open_image_return_dimensions.ipynb 0\n",
      "reference ../test_cases/open_nifti_image.ipynb 0\n",
      "reference ../test_cases/open_zarr.ipynb 0\n",
      "reference ../test_cases/pair_wise_correlation_matrix.ipynb 0\n",
      "reference ../test_cases/radial_intensity_profile.ipynb 0\n",
      "reference ../test_cases/region_growing_segmentation.ipynb 0\n",
      "reference ../test_cases/remove_labels_on_edges.ipynb 0\n",
      "reference ../test_cases/remove_noise_edge_preserving.ipynb 0\n",
      "reference ../test_cases/remove_small_labels.ipynb 0\n",
      "reference ../test_cases/return_hello_world.ipynb 0\n",
      "reference ../test_cases/rgb_to_grey_image_transform.ipynb 0\n",
      "reference ../test_cases/rotate_image_by_90_degrees.ipynb 0\n",
      "reference ../test_cases/subsample_image.ipynb 0\n",
      "reference ../test_cases/subtract_background_tophat.ipynb 0\n",
      "reference ../test_cases/sum_images.ipynb 0\n",
      "reference ../test_cases/sum_intensity_projection.ipynb 0\n",
      "reference ../test_cases/tiled_image_processing.ipynb 0\n",
      "reference ../test_cases/transpose_image_axes.ipynb 0\n",
      "reference ../test_cases/t_test.ipynb 0\n",
      "reference ../test_cases/workflow_batch_process_folder_count_labels.ipynb 0\n",
      "reference ../test_cases/workflow_batch_process_folder_measure_intensity.ipynb 0\n",
      "reference ../test_cases/workflow_segmentation_counting.ipynb 0\n",
      "reference ../test_cases/workflow_segmentation_measurement_summary.ipynb 0\n",
      "reference ../test_cases/workflow_segment_measure_umap.ipynb 0\n",
      "reference ../test_cases/workflow_watershed_segmentation_correction_measurement.ipynb 0\n",
      "reference ../test_cases/apply_otsu_threshold_and_count_postiive_pixels.ipynb 1\n",
      "reference ../test_cases/binary_closing.ipynb 1\n",
      "reference ../test_cases/binary_skeleton.ipynb 1\n",
      "reference ../test_cases/bland_altman.ipynb 1\n",
      "reference ../test_cases/combine_columns_of_tables.ipynb 1\n",
      "reference ../test_cases/convex_hull_measure_area.ipynb 1\n",
      "reference ../test_cases/convolve_images.ipynb 1\n",
      "reference ../test_cases/count_number_of_touching_neighbors.ipynb 1\n",
      "reference ../test_cases/count_objects_over_time.ipynb 1\n",
      "reference ../test_cases/count_overlapping_regions.ipynb 1\n",
      "reference ../test_cases/create_umap.ipynb 1\n",
      "reference ../test_cases/crop_quarter_image.ipynb 1\n",
      "reference ../test_cases/deconvolve_image.ipynb 1\n",
      "reference ../test_cases/detect_edges.ipynb 1\n",
      "reference ../test_cases/expand_labels_without_overlap.ipynb 1\n",
      "reference ../test_cases/extract_surface_measure_area.ipynb 1\n",
      "reference ../test_cases/fit_circle.ipynb 1\n",
      "reference ../test_cases/label_binary_image_and_count_labels.ipynb 1\n",
      "reference ../test_cases/label_sequentially.ipynb 1\n",
      "reference ../test_cases/list_image_files_in_folder.ipynb 1\n",
      "reference ../test_cases/map_pixel_count_of_labels.ipynb 1\n",
      "reference ../test_cases/mask_image.ipynb 1\n",
      "reference ../test_cases/maximum_intensity_projection.ipynb 1\n",
      "reference ../test_cases/mean_squared_error.ipynb 1\n",
      "reference ../test_cases/mean_std_column.ipynb 1\n",
      "reference ../test_cases/measure_aspect_ratio_of_regions.ipynb 1\n",
      "reference ../test_cases/measure_intensity_of_labels.ipynb 1\n",
      "reference ../test_cases/measure_intensity_over_time.ipynb 1\n",
      "reference ../test_cases/measure_mean_image_intensity.ipynb 1\n",
      "reference ../test_cases/measure_pixel_count_of_labels.ipynb 1\n",
      "reference ../test_cases/measure_properties_of_regions.ipynb 1\n",
      "reference ../test_cases/open_image_read_voxel_size.ipynb 1\n",
      "reference ../test_cases/open_image_return_dimensions.ipynb 1\n",
      "reference ../test_cases/open_nifti_image.ipynb 1\n",
      "reference ../test_cases/open_zarr.ipynb 1\n",
      "reference ../test_cases/pair_wise_correlation_matrix.ipynb 1\n",
      "reference ../test_cases/radial_intensity_profile.ipynb 1\n",
      "reference ../test_cases/region_growing_segmentation.ipynb 1\n",
      "reference ../test_cases/remove_labels_on_edges.ipynb 1\n",
      "reference ../test_cases/remove_noise_edge_preserving.ipynb 1\n",
      "reference ../test_cases/remove_small_labels.ipynb 1\n",
      "reference ../test_cases/return_hello_world.ipynb 1\n",
      "reference ../test_cases/rgb_to_grey_image_transform.ipynb 1\n",
      "reference ../test_cases/rotate_image_by_90_degrees.ipynb 1\n",
      "reference ../test_cases/subsample_image.ipynb 1\n",
      "reference ../test_cases/subtract_background_tophat.ipynb 1\n",
      "reference ../test_cases/sum_images.ipynb 1\n",
      "reference ../test_cases/sum_intensity_projection.ipynb 1\n",
      "reference ../test_cases/tiled_image_processing.ipynb 1\n",
      "reference ../test_cases/transpose_image_axes.ipynb 1\n",
      "reference ../test_cases/t_test.ipynb 1\n",
      "reference ../test_cases/workflow_batch_process_folder_count_labels.ipynb 1\n",
      "reference ../test_cases/workflow_batch_process_folder_measure_intensity.ipynb 1\n",
      "reference ../test_cases/workflow_segmentation_counting.ipynb 1\n",
      "reference ../test_cases/workflow_segmentation_measurement_summary.ipynb 1\n",
      "reference ../test_cases/workflow_segment_measure_umap.ipynb 1\n",
      "reference ../test_cases/workflow_watershed_segmentation_correction_measurement.ipynb 1\n",
      "reference ../test_cases/apply_otsu_threshold_and_count_postiive_pixels.ipynb 2\n",
      "reference ../test_cases/binary_closing.ipynb 2\n",
      "reference ../test_cases/binary_skeleton.ipynb 2\n",
      "reference ../test_cases/bland_altman.ipynb 2\n",
      "reference ../test_cases/combine_columns_of_tables.ipynb 2\n",
      "reference ../test_cases/convex_hull_measure_area.ipynb 2\n",
      "reference ../test_cases/convolve_images.ipynb 2\n",
      "reference ../test_cases/count_number_of_touching_neighbors.ipynb 2\n",
      "reference ../test_cases/count_objects_over_time.ipynb 2\n",
      "reference ../test_cases/count_overlapping_regions.ipynb 2\n",
      "reference ../test_cases/create_umap.ipynb 2\n",
      "reference ../test_cases/crop_quarter_image.ipynb 2\n",
      "reference ../test_cases/deconvolve_image.ipynb 2\n",
      "reference ../test_cases/detect_edges.ipynb 2\n",
      "reference ../test_cases/expand_labels_without_overlap.ipynb 2\n",
      "reference ../test_cases/extract_surface_measure_area.ipynb 2\n",
      "reference ../test_cases/fit_circle.ipynb 2\n",
      "reference ../test_cases/label_binary_image_and_count_labels.ipynb 2\n",
      "reference ../test_cases/label_sequentially.ipynb 2\n",
      "reference ../test_cases/list_image_files_in_folder.ipynb 2\n",
      "reference ../test_cases/map_pixel_count_of_labels.ipynb 2\n",
      "reference ../test_cases/mask_image.ipynb 2\n",
      "reference ../test_cases/maximum_intensity_projection.ipynb 2\n",
      "reference ../test_cases/mean_squared_error.ipynb 2\n",
      "reference ../test_cases/mean_std_column.ipynb 2\n",
      "reference ../test_cases/measure_aspect_ratio_of_regions.ipynb 2\n",
      "reference ../test_cases/measure_intensity_of_labels.ipynb 2\n",
      "reference ../test_cases/measure_intensity_over_time.ipynb 2\n",
      "reference ../test_cases/measure_mean_image_intensity.ipynb 2\n",
      "reference ../test_cases/measure_pixel_count_of_labels.ipynb 2\n",
      "reference ../test_cases/measure_properties_of_regions.ipynb 2\n",
      "reference ../test_cases/open_image_read_voxel_size.ipynb 2\n",
      "reference ../test_cases/open_image_return_dimensions.ipynb 2\n",
      "reference ../test_cases/open_nifti_image.ipynb 2\n",
      "reference ../test_cases/open_zarr.ipynb 2\n",
      "reference ../test_cases/pair_wise_correlation_matrix.ipynb 2\n",
      "reference ../test_cases/radial_intensity_profile.ipynb 2\n",
      "reference ../test_cases/region_growing_segmentation.ipynb 2\n",
      "reference ../test_cases/remove_labels_on_edges.ipynb 2\n",
      "reference ../test_cases/remove_noise_edge_preserving.ipynb 2\n",
      "reference ../test_cases/remove_small_labels.ipynb 2\n",
      "reference ../test_cases/return_hello_world.ipynb 2\n",
      "reference ../test_cases/rgb_to_grey_image_transform.ipynb 2\n",
      "reference ../test_cases/rotate_image_by_90_degrees.ipynb 2\n",
      "reference ../test_cases/subsample_image.ipynb 2\n",
      "reference ../test_cases/subtract_background_tophat.ipynb 2\n",
      "reference ../test_cases/sum_images.ipynb 2\n",
      "reference ../test_cases/sum_intensity_projection.ipynb 2\n",
      "reference ../test_cases/tiled_image_processing.ipynb 2\n",
      "reference ../test_cases/transpose_image_axes.ipynb 2\n",
      "reference ../test_cases/t_test.ipynb 2\n",
      "reference ../test_cases/workflow_batch_process_folder_count_labels.ipynb 2\n",
      "reference ../test_cases/workflow_batch_process_folder_measure_intensity.ipynb 2\n",
      "reference ../test_cases/workflow_segmentation_counting.ipynb 2\n",
      "reference ../test_cases/workflow_segmentation_measurement_summary.ipynb 2\n",
      "reference ../test_cases/workflow_segment_measure_umap.ipynb 2\n",
      "reference ../test_cases/workflow_watershed_segmentation_correction_measurement.ipynb 2\n",
      "reference ../test_cases/apply_otsu_threshold_and_count_postiive_pixels.ipynb 3\n",
      "reference ../test_cases/binary_closing.ipynb 3\n",
      "reference ../test_cases/binary_skeleton.ipynb 3\n",
      "reference ../test_cases/bland_altman.ipynb 3\n",
      "reference ../test_cases/combine_columns_of_tables.ipynb 3\n",
      "reference ../test_cases/convex_hull_measure_area.ipynb 3\n",
      "reference ../test_cases/convolve_images.ipynb 3\n",
      "reference ../test_cases/count_number_of_touching_neighbors.ipynb 3\n",
      "reference ../test_cases/count_objects_over_time.ipynb 3\n",
      "reference ../test_cases/count_overlapping_regions.ipynb 3\n",
      "reference ../test_cases/create_umap.ipynb 3\n",
      "reference ../test_cases/crop_quarter_image.ipynb 3\n",
      "reference ../test_cases/deconvolve_image.ipynb 3\n",
      "reference ../test_cases/detect_edges.ipynb 3\n",
      "reference ../test_cases/expand_labels_without_overlap.ipynb 3\n",
      "reference ../test_cases/extract_surface_measure_area.ipynb 3\n",
      "reference ../test_cases/fit_circle.ipynb 3\n",
      "reference ../test_cases/label_binary_image_and_count_labels.ipynb 3\n",
      "reference ../test_cases/label_sequentially.ipynb 3\n",
      "reference ../test_cases/list_image_files_in_folder.ipynb 3\n",
      "reference ../test_cases/map_pixel_count_of_labels.ipynb 3\n",
      "reference ../test_cases/mask_image.ipynb 3\n",
      "reference ../test_cases/maximum_intensity_projection.ipynb 3\n",
      "reference ../test_cases/mean_squared_error.ipynb 3\n",
      "reference ../test_cases/mean_std_column.ipynb 3\n",
      "reference ../test_cases/measure_aspect_ratio_of_regions.ipynb 3\n",
      "reference ../test_cases/measure_intensity_of_labels.ipynb 3\n",
      "reference ../test_cases/measure_intensity_over_time.ipynb 3\n",
      "reference ../test_cases/measure_mean_image_intensity.ipynb 3\n",
      "reference ../test_cases/measure_pixel_count_of_labels.ipynb 3\n",
      "reference ../test_cases/measure_properties_of_regions.ipynb 3\n",
      "reference ../test_cases/open_image_read_voxel_size.ipynb 3\n",
      "reference ../test_cases/open_image_return_dimensions.ipynb 3\n",
      "reference ../test_cases/open_nifti_image.ipynb 3\n",
      "reference ../test_cases/open_zarr.ipynb 3\n",
      "reference ../test_cases/pair_wise_correlation_matrix.ipynb 3\n",
      "reference ../test_cases/radial_intensity_profile.ipynb 3\n",
      "reference ../test_cases/region_growing_segmentation.ipynb 3\n",
      "reference ../test_cases/remove_labels_on_edges.ipynb 3\n",
      "reference ../test_cases/remove_noise_edge_preserving.ipynb 3\n",
      "reference ../test_cases/remove_small_labels.ipynb 3\n",
      "reference ../test_cases/return_hello_world.ipynb 3\n",
      "reference ../test_cases/rgb_to_grey_image_transform.ipynb 3\n",
      "reference ../test_cases/rotate_image_by_90_degrees.ipynb 3\n",
      "reference ../test_cases/subsample_image.ipynb 3\n",
      "reference ../test_cases/subtract_background_tophat.ipynb 3\n",
      "reference ../test_cases/sum_images.ipynb 3\n",
      "reference ../test_cases/sum_intensity_projection.ipynb 3\n",
      "reference ../test_cases/tiled_image_processing.ipynb 3\n",
      "reference ../test_cases/transpose_image_axes.ipynb 3\n",
      "reference ../test_cases/t_test.ipynb 3\n",
      "reference ../test_cases/workflow_batch_process_folder_count_labels.ipynb 3\n",
      "reference ../test_cases/workflow_batch_process_folder_measure_intensity.ipynb 3\n",
      "reference ../test_cases/workflow_segmentation_counting.ipynb 3\n",
      "reference ../test_cases/workflow_segmentation_measurement_summary.ipynb 3\n",
      "reference ../test_cases/workflow_segment_measure_umap.ipynb 3\n",
      "reference ../test_cases/workflow_watershed_segmentation_correction_measurement.ipynb 3\n",
      "reference ../test_cases/apply_otsu_threshold_and_count_postiive_pixels.ipynb 4\n",
      "reference ../test_cases/binary_closing.ipynb 4\n",
      "reference ../test_cases/binary_skeleton.ipynb 4\n",
      "reference ../test_cases/bland_altman.ipynb 4\n",
      "reference ../test_cases/combine_columns_of_tables.ipynb 4\n",
      "reference ../test_cases/convex_hull_measure_area.ipynb 4\n",
      "reference ../test_cases/convolve_images.ipynb 4\n",
      "reference ../test_cases/count_number_of_touching_neighbors.ipynb 4\n",
      "reference ../test_cases/count_objects_over_time.ipynb 4\n",
      "reference ../test_cases/count_overlapping_regions.ipynb 4\n",
      "reference ../test_cases/create_umap.ipynb 4\n",
      "reference ../test_cases/crop_quarter_image.ipynb 4\n",
      "reference ../test_cases/deconvolve_image.ipynb 4\n",
      "reference ../test_cases/detect_edges.ipynb 4\n",
      "reference ../test_cases/expand_labels_without_overlap.ipynb 4\n",
      "reference ../test_cases/extract_surface_measure_area.ipynb 4\n",
      "reference ../test_cases/fit_circle.ipynb 4\n",
      "reference ../test_cases/label_binary_image_and_count_labels.ipynb 4\n",
      "reference ../test_cases/label_sequentially.ipynb 4\n",
      "reference ../test_cases/list_image_files_in_folder.ipynb 4\n",
      "reference ../test_cases/map_pixel_count_of_labels.ipynb 4\n",
      "reference ../test_cases/mask_image.ipynb 4\n",
      "reference ../test_cases/maximum_intensity_projection.ipynb 4\n",
      "reference ../test_cases/mean_squared_error.ipynb 4\n",
      "reference ../test_cases/mean_std_column.ipynb 4\n",
      "reference ../test_cases/measure_aspect_ratio_of_regions.ipynb 4\n",
      "reference ../test_cases/measure_intensity_of_labels.ipynb 4\n",
      "reference ../test_cases/measure_intensity_over_time.ipynb 4\n",
      "reference ../test_cases/measure_mean_image_intensity.ipynb 4\n",
      "reference ../test_cases/measure_pixel_count_of_labels.ipynb 4\n",
      "reference ../test_cases/measure_properties_of_regions.ipynb 4\n",
      "reference ../test_cases/open_image_read_voxel_size.ipynb 4\n",
      "reference ../test_cases/open_image_return_dimensions.ipynb 4\n",
      "reference ../test_cases/open_nifti_image.ipynb 4\n",
      "reference ../test_cases/open_zarr.ipynb 4\n",
      "reference ../test_cases/pair_wise_correlation_matrix.ipynb 4\n",
      "reference ../test_cases/radial_intensity_profile.ipynb 4\n",
      "reference ../test_cases/region_growing_segmentation.ipynb 4\n",
      "reference ../test_cases/remove_labels_on_edges.ipynb 4\n",
      "reference ../test_cases/remove_noise_edge_preserving.ipynb 4\n",
      "reference ../test_cases/remove_small_labels.ipynb 4\n",
      "reference ../test_cases/return_hello_world.ipynb 4\n",
      "reference ../test_cases/rgb_to_grey_image_transform.ipynb 4\n",
      "reference ../test_cases/rotate_image_by_90_degrees.ipynb 4\n",
      "reference ../test_cases/subsample_image.ipynb 4\n",
      "reference ../test_cases/subtract_background_tophat.ipynb 4\n",
      "reference ../test_cases/sum_images.ipynb 4\n",
      "reference ../test_cases/sum_intensity_projection.ipynb 4\n",
      "reference ../test_cases/tiled_image_processing.ipynb 4\n",
      "reference ../test_cases/transpose_image_axes.ipynb 4\n",
      "reference ../test_cases/t_test.ipynb 4\n",
      "reference ../test_cases/workflow_batch_process_folder_count_labels.ipynb 4\n",
      "reference ../test_cases/workflow_batch_process_folder_measure_intensity.ipynb 4\n",
      "reference ../test_cases/workflow_segmentation_counting.ipynb 4\n",
      "reference ../test_cases/workflow_segmentation_measurement_summary.ipynb 4\n",
      "reference ../test_cases/workflow_segment_measure_umap.ipynb 4\n",
      "reference ../test_cases/workflow_watershed_segmentation_correction_measurement.ipynb 4\n",
      "reference ../test_cases/apply_otsu_threshold_and_count_postiive_pixels.ipynb 5\n",
      "reference ../test_cases/binary_closing.ipynb 5\n",
      "reference ../test_cases/binary_skeleton.ipynb 5\n",
      "reference ../test_cases/bland_altman.ipynb 5\n",
      "reference ../test_cases/combine_columns_of_tables.ipynb 5\n",
      "reference ../test_cases/convex_hull_measure_area.ipynb 5\n",
      "reference ../test_cases/convolve_images.ipynb 5\n",
      "reference ../test_cases/count_number_of_touching_neighbors.ipynb 5\n",
      "reference ../test_cases/count_objects_over_time.ipynb 5\n",
      "reference ../test_cases/count_overlapping_regions.ipynb 5\n",
      "reference ../test_cases/create_umap.ipynb 5\n",
      "reference ../test_cases/crop_quarter_image.ipynb 5\n",
      "reference ../test_cases/deconvolve_image.ipynb 5\n",
      "reference ../test_cases/detect_edges.ipynb 5\n",
      "reference ../test_cases/expand_labels_without_overlap.ipynb 5\n",
      "reference ../test_cases/extract_surface_measure_area.ipynb 5\n",
      "reference ../test_cases/fit_circle.ipynb 5\n",
      "reference ../test_cases/label_binary_image_and_count_labels.ipynb 5\n",
      "reference ../test_cases/label_sequentially.ipynb 5\n",
      "reference ../test_cases/list_image_files_in_folder.ipynb 5\n",
      "reference ../test_cases/map_pixel_count_of_labels.ipynb 5\n",
      "reference ../test_cases/mask_image.ipynb 5\n",
      "reference ../test_cases/maximum_intensity_projection.ipynb 5\n",
      "reference ../test_cases/mean_squared_error.ipynb 5\n",
      "reference ../test_cases/mean_std_column.ipynb 5\n",
      "reference ../test_cases/measure_aspect_ratio_of_regions.ipynb 5\n",
      "reference ../test_cases/measure_intensity_of_labels.ipynb 5\n",
      "reference ../test_cases/measure_intensity_over_time.ipynb 5\n",
      "reference ../test_cases/measure_mean_image_intensity.ipynb 5\n",
      "reference ../test_cases/measure_pixel_count_of_labels.ipynb 5\n",
      "reference ../test_cases/measure_properties_of_regions.ipynb 5\n",
      "reference ../test_cases/open_image_read_voxel_size.ipynb 5\n",
      "reference ../test_cases/open_image_return_dimensions.ipynb 5\n",
      "reference ../test_cases/open_nifti_image.ipynb 5\n",
      "reference ../test_cases/open_zarr.ipynb 5\n",
      "reference ../test_cases/pair_wise_correlation_matrix.ipynb 5\n",
      "reference ../test_cases/radial_intensity_profile.ipynb 5\n",
      "reference ../test_cases/region_growing_segmentation.ipynb 5\n",
      "reference ../test_cases/remove_labels_on_edges.ipynb 5\n",
      "reference ../test_cases/remove_noise_edge_preserving.ipynb 5\n",
      "reference ../test_cases/remove_small_labels.ipynb 5\n",
      "reference ../test_cases/return_hello_world.ipynb 5\n",
      "reference ../test_cases/rgb_to_grey_image_transform.ipynb 5\n",
      "reference ../test_cases/rotate_image_by_90_degrees.ipynb 5\n",
      "reference ../test_cases/subsample_image.ipynb 5\n",
      "reference ../test_cases/subtract_background_tophat.ipynb 5\n",
      "reference ../test_cases/sum_images.ipynb 5\n",
      "reference ../test_cases/sum_intensity_projection.ipynb 5\n",
      "reference ../test_cases/tiled_image_processing.ipynb 5\n",
      "reference ../test_cases/transpose_image_axes.ipynb 5\n",
      "reference ../test_cases/t_test.ipynb 5\n",
      "reference ../test_cases/workflow_batch_process_folder_count_labels.ipynb 5\n",
      "reference ../test_cases/workflow_batch_process_folder_measure_intensity.ipynb 5\n",
      "reference ../test_cases/workflow_segmentation_counting.ipynb 5\n",
      "reference ../test_cases/workflow_segmentation_measurement_summary.ipynb 5\n",
      "reference ../test_cases/workflow_segment_measure_umap.ipynb 5\n",
      "reference ../test_cases/workflow_watershed_segmentation_correction_measurement.ipynb 5\n",
      "reference ../test_cases/apply_otsu_threshold_and_count_postiive_pixels.ipynb 6\n",
      "reference ../test_cases/binary_closing.ipynb 6\n",
      "reference ../test_cases/binary_skeleton.ipynb 6\n",
      "reference ../test_cases/bland_altman.ipynb 6\n",
      "reference ../test_cases/combine_columns_of_tables.ipynb 6\n",
      "reference ../test_cases/convex_hull_measure_area.ipynb 6\n",
      "reference ../test_cases/convolve_images.ipynb 6\n",
      "reference ../test_cases/count_number_of_touching_neighbors.ipynb 6\n",
      "reference ../test_cases/count_objects_over_time.ipynb 6\n",
      "reference ../test_cases/count_overlapping_regions.ipynb 6\n",
      "reference ../test_cases/create_umap.ipynb 6\n",
      "reference ../test_cases/crop_quarter_image.ipynb 6\n",
      "reference ../test_cases/deconvolve_image.ipynb 6\n",
      "reference ../test_cases/detect_edges.ipynb 6\n",
      "reference ../test_cases/expand_labels_without_overlap.ipynb 6\n",
      "reference ../test_cases/extract_surface_measure_area.ipynb 6\n",
      "reference ../test_cases/fit_circle.ipynb 6\n",
      "reference ../test_cases/label_binary_image_and_count_labels.ipynb 6\n",
      "reference ../test_cases/label_sequentially.ipynb 6\n",
      "reference ../test_cases/list_image_files_in_folder.ipynb 6\n",
      "reference ../test_cases/map_pixel_count_of_labels.ipynb 6\n",
      "reference ../test_cases/mask_image.ipynb 6\n",
      "reference ../test_cases/maximum_intensity_projection.ipynb 6\n",
      "reference ../test_cases/mean_squared_error.ipynb 6\n",
      "reference ../test_cases/mean_std_column.ipynb 6\n",
      "reference ../test_cases/measure_aspect_ratio_of_regions.ipynb 6\n",
      "reference ../test_cases/measure_intensity_of_labels.ipynb 6\n",
      "reference ../test_cases/measure_intensity_over_time.ipynb 6\n",
      "reference ../test_cases/measure_mean_image_intensity.ipynb 6\n",
      "reference ../test_cases/measure_pixel_count_of_labels.ipynb 6\n",
      "reference ../test_cases/measure_properties_of_regions.ipynb 6\n",
      "reference ../test_cases/open_image_read_voxel_size.ipynb 6\n",
      "reference ../test_cases/open_image_return_dimensions.ipynb 6\n",
      "reference ../test_cases/open_nifti_image.ipynb 6\n",
      "reference ../test_cases/open_zarr.ipynb 6\n",
      "reference ../test_cases/pair_wise_correlation_matrix.ipynb 6\n",
      "reference ../test_cases/radial_intensity_profile.ipynb 6\n",
      "reference ../test_cases/region_growing_segmentation.ipynb 6\n",
      "reference ../test_cases/remove_labels_on_edges.ipynb 6\n",
      "reference ../test_cases/remove_noise_edge_preserving.ipynb 6\n",
      "reference ../test_cases/remove_small_labels.ipynb 6\n",
      "reference ../test_cases/return_hello_world.ipynb 6\n",
      "reference ../test_cases/rgb_to_grey_image_transform.ipynb 6\n",
      "reference ../test_cases/rotate_image_by_90_degrees.ipynb 6\n",
      "reference ../test_cases/subsample_image.ipynb 6\n",
      "reference ../test_cases/subtract_background_tophat.ipynb 6\n",
      "reference ../test_cases/sum_images.ipynb 6\n",
      "reference ../test_cases/sum_intensity_projection.ipynb 6\n",
      "reference ../test_cases/tiled_image_processing.ipynb 6\n",
      "reference ../test_cases/transpose_image_axes.ipynb 6\n",
      "reference ../test_cases/t_test.ipynb 6\n",
      "reference ../test_cases/workflow_batch_process_folder_count_labels.ipynb 6\n",
      "reference ../test_cases/workflow_batch_process_folder_measure_intensity.ipynb 6\n",
      "reference ../test_cases/workflow_segmentation_counting.ipynb 6\n",
      "reference ../test_cases/workflow_segmentation_measurement_summary.ipynb 6\n",
      "reference ../test_cases/workflow_segment_measure_umap.ipynb 6\n",
      "reference ../test_cases/workflow_watershed_segmentation_correction_measurement.ipynb 6\n",
      "reference ../test_cases/apply_otsu_threshold_and_count_postiive_pixels.ipynb 7\n",
      "reference ../test_cases/binary_closing.ipynb 7\n",
      "reference ../test_cases/binary_skeleton.ipynb 7\n",
      "reference ../test_cases/bland_altman.ipynb 7\n",
      "reference ../test_cases/combine_columns_of_tables.ipynb 7\n",
      "reference ../test_cases/convex_hull_measure_area.ipynb 7\n",
      "reference ../test_cases/convolve_images.ipynb 7\n",
      "reference ../test_cases/count_number_of_touching_neighbors.ipynb 7\n",
      "reference ../test_cases/count_objects_over_time.ipynb 7\n",
      "reference ../test_cases/count_overlapping_regions.ipynb 7\n",
      "reference ../test_cases/create_umap.ipynb 7\n",
      "reference ../test_cases/crop_quarter_image.ipynb 7\n",
      "reference ../test_cases/deconvolve_image.ipynb 7\n",
      "reference ../test_cases/detect_edges.ipynb 7\n",
      "reference ../test_cases/expand_labels_without_overlap.ipynb 7\n",
      "reference ../test_cases/extract_surface_measure_area.ipynb 7\n",
      "reference ../test_cases/fit_circle.ipynb 7\n",
      "reference ../test_cases/label_binary_image_and_count_labels.ipynb 7\n",
      "reference ../test_cases/label_sequentially.ipynb 7\n",
      "reference ../test_cases/list_image_files_in_folder.ipynb 7\n",
      "reference ../test_cases/map_pixel_count_of_labels.ipynb 7\n",
      "reference ../test_cases/mask_image.ipynb 7\n",
      "reference ../test_cases/maximum_intensity_projection.ipynb 7\n",
      "reference ../test_cases/mean_squared_error.ipynb 7\n",
      "reference ../test_cases/mean_std_column.ipynb 7\n",
      "reference ../test_cases/measure_aspect_ratio_of_regions.ipynb 7\n",
      "reference ../test_cases/measure_intensity_of_labels.ipynb 7\n",
      "reference ../test_cases/measure_intensity_over_time.ipynb 7\n",
      "reference ../test_cases/measure_mean_image_intensity.ipynb 7\n",
      "reference ../test_cases/measure_pixel_count_of_labels.ipynb 7\n",
      "reference ../test_cases/measure_properties_of_regions.ipynb 7\n",
      "reference ../test_cases/open_image_read_voxel_size.ipynb 7\n",
      "reference ../test_cases/open_image_return_dimensions.ipynb 7\n",
      "reference ../test_cases/open_nifti_image.ipynb 7\n",
      "reference ../test_cases/open_zarr.ipynb 7\n",
      "reference ../test_cases/pair_wise_correlation_matrix.ipynb 7\n",
      "reference ../test_cases/radial_intensity_profile.ipynb 7\n",
      "reference ../test_cases/region_growing_segmentation.ipynb 7\n",
      "reference ../test_cases/remove_labels_on_edges.ipynb 7\n",
      "reference ../test_cases/remove_noise_edge_preserving.ipynb 7\n",
      "reference ../test_cases/remove_small_labels.ipynb 7\n",
      "reference ../test_cases/return_hello_world.ipynb 7\n",
      "reference ../test_cases/rgb_to_grey_image_transform.ipynb 7\n",
      "reference ../test_cases/rotate_image_by_90_degrees.ipynb 7\n",
      "reference ../test_cases/subsample_image.ipynb 7\n",
      "reference ../test_cases/subtract_background_tophat.ipynb 7\n",
      "reference ../test_cases/sum_images.ipynb 7\n",
      "reference ../test_cases/sum_intensity_projection.ipynb 7\n",
      "reference ../test_cases/tiled_image_processing.ipynb 7\n",
      "reference ../test_cases/transpose_image_axes.ipynb 7\n",
      "reference ../test_cases/t_test.ipynb 7\n",
      "reference ../test_cases/workflow_batch_process_folder_count_labels.ipynb 7\n",
      "reference ../test_cases/workflow_batch_process_folder_measure_intensity.ipynb 7\n",
      "reference ../test_cases/workflow_segmentation_counting.ipynb 7\n",
      "reference ../test_cases/workflow_segmentation_measurement_summary.ipynb 7\n",
      "reference ../test_cases/workflow_segment_measure_umap.ipynb 7\n",
      "reference ../test_cases/workflow_watershed_segmentation_correction_measurement.ipynb 7\n",
      "reference ../test_cases/apply_otsu_threshold_and_count_postiive_pixels.ipynb 8\n",
      "reference ../test_cases/binary_closing.ipynb 8\n",
      "reference ../test_cases/binary_skeleton.ipynb 8\n",
      "reference ../test_cases/bland_altman.ipynb 8\n",
      "reference ../test_cases/combine_columns_of_tables.ipynb 8\n",
      "reference ../test_cases/convex_hull_measure_area.ipynb 8\n",
      "reference ../test_cases/convolve_images.ipynb 8\n",
      "reference ../test_cases/count_number_of_touching_neighbors.ipynb 8\n",
      "reference ../test_cases/count_objects_over_time.ipynb 8\n",
      "reference ../test_cases/count_overlapping_regions.ipynb 8\n",
      "reference ../test_cases/create_umap.ipynb 8\n",
      "reference ../test_cases/crop_quarter_image.ipynb 8\n",
      "reference ../test_cases/deconvolve_image.ipynb 8\n",
      "reference ../test_cases/detect_edges.ipynb 8\n",
      "reference ../test_cases/expand_labels_without_overlap.ipynb 8\n",
      "reference ../test_cases/extract_surface_measure_area.ipynb 8\n",
      "reference ../test_cases/fit_circle.ipynb 8\n",
      "reference ../test_cases/label_binary_image_and_count_labels.ipynb 8\n",
      "reference ../test_cases/label_sequentially.ipynb 8\n",
      "reference ../test_cases/list_image_files_in_folder.ipynb 8\n",
      "reference ../test_cases/map_pixel_count_of_labels.ipynb 8\n",
      "reference ../test_cases/mask_image.ipynb 8\n",
      "reference ../test_cases/maximum_intensity_projection.ipynb 8\n",
      "reference ../test_cases/mean_squared_error.ipynb 8\n",
      "reference ../test_cases/mean_std_column.ipynb 8\n",
      "reference ../test_cases/measure_aspect_ratio_of_regions.ipynb 8\n",
      "reference ../test_cases/measure_intensity_of_labels.ipynb 8\n",
      "reference ../test_cases/measure_intensity_over_time.ipynb 8\n",
      "reference ../test_cases/measure_mean_image_intensity.ipynb 8\n",
      "reference ../test_cases/measure_pixel_count_of_labels.ipynb 8\n",
      "reference ../test_cases/measure_properties_of_regions.ipynb 8\n",
      "reference ../test_cases/open_image_read_voxel_size.ipynb 8\n",
      "reference ../test_cases/open_image_return_dimensions.ipynb 8\n",
      "reference ../test_cases/open_nifti_image.ipynb 8\n",
      "reference ../test_cases/open_zarr.ipynb 8\n",
      "reference ../test_cases/pair_wise_correlation_matrix.ipynb 8\n",
      "reference ../test_cases/radial_intensity_profile.ipynb 8\n",
      "reference ../test_cases/region_growing_segmentation.ipynb 8\n",
      "reference ../test_cases/remove_labels_on_edges.ipynb 8\n",
      "reference ../test_cases/remove_noise_edge_preserving.ipynb 8\n",
      "reference ../test_cases/remove_small_labels.ipynb 8\n",
      "reference ../test_cases/return_hello_world.ipynb 8\n",
      "reference ../test_cases/rgb_to_grey_image_transform.ipynb 8\n",
      "reference ../test_cases/rotate_image_by_90_degrees.ipynb 8\n",
      "reference ../test_cases/subsample_image.ipynb 8\n",
      "reference ../test_cases/subtract_background_tophat.ipynb 8\n",
      "reference ../test_cases/sum_images.ipynb 8\n",
      "reference ../test_cases/sum_intensity_projection.ipynb 8\n",
      "reference ../test_cases/tiled_image_processing.ipynb 8\n",
      "reference ../test_cases/transpose_image_axes.ipynb 8\n",
      "reference ../test_cases/t_test.ipynb 8\n",
      "reference ../test_cases/workflow_batch_process_folder_count_labels.ipynb 8\n",
      "reference ../test_cases/workflow_batch_process_folder_measure_intensity.ipynb 8\n",
      "reference ../test_cases/workflow_segmentation_counting.ipynb 8\n",
      "reference ../test_cases/workflow_segmentation_measurement_summary.ipynb 8\n",
      "reference ../test_cases/workflow_segment_measure_umap.ipynb 8\n",
      "reference ../test_cases/workflow_watershed_segmentation_correction_measurement.ipynb 8\n",
      "reference ../test_cases/apply_otsu_threshold_and_count_postiive_pixels.ipynb 9\n",
      "reference ../test_cases/binary_closing.ipynb 9\n",
      "reference ../test_cases/binary_skeleton.ipynb 9\n",
      "reference ../test_cases/bland_altman.ipynb 9\n",
      "reference ../test_cases/combine_columns_of_tables.ipynb 9\n",
      "reference ../test_cases/convex_hull_measure_area.ipynb 9\n",
      "reference ../test_cases/convolve_images.ipynb 9\n",
      "reference ../test_cases/count_number_of_touching_neighbors.ipynb 9\n",
      "reference ../test_cases/count_objects_over_time.ipynb 9\n",
      "reference ../test_cases/count_overlapping_regions.ipynb 9\n",
      "reference ../test_cases/create_umap.ipynb 9\n",
      "reference ../test_cases/crop_quarter_image.ipynb 9\n",
      "reference ../test_cases/deconvolve_image.ipynb 9\n",
      "reference ../test_cases/detect_edges.ipynb 9\n",
      "reference ../test_cases/expand_labels_without_overlap.ipynb 9\n",
      "reference ../test_cases/extract_surface_measure_area.ipynb 9\n",
      "reference ../test_cases/fit_circle.ipynb 9\n",
      "reference ../test_cases/label_binary_image_and_count_labels.ipynb 9\n",
      "reference ../test_cases/label_sequentially.ipynb 9\n",
      "reference ../test_cases/list_image_files_in_folder.ipynb 9\n",
      "reference ../test_cases/map_pixel_count_of_labels.ipynb 9\n",
      "reference ../test_cases/mask_image.ipynb 9\n",
      "reference ../test_cases/maximum_intensity_projection.ipynb 9\n",
      "reference ../test_cases/mean_squared_error.ipynb 9\n",
      "reference ../test_cases/mean_std_column.ipynb 9\n",
      "reference ../test_cases/measure_aspect_ratio_of_regions.ipynb 9\n",
      "reference ../test_cases/measure_intensity_of_labels.ipynb 9\n",
      "reference ../test_cases/measure_intensity_over_time.ipynb 9\n",
      "reference ../test_cases/measure_mean_image_intensity.ipynb 9\n",
      "reference ../test_cases/measure_pixel_count_of_labels.ipynb 9\n",
      "reference ../test_cases/measure_properties_of_regions.ipynb 9\n",
      "reference ../test_cases/open_image_read_voxel_size.ipynb 9\n",
      "reference ../test_cases/open_image_return_dimensions.ipynb 9\n",
      "reference ../test_cases/open_nifti_image.ipynb 9\n",
      "reference ../test_cases/open_zarr.ipynb 9\n",
      "reference ../test_cases/pair_wise_correlation_matrix.ipynb 9\n",
      "reference ../test_cases/radial_intensity_profile.ipynb 9\n",
      "reference ../test_cases/region_growing_segmentation.ipynb 9\n",
      "reference ../test_cases/remove_labels_on_edges.ipynb 9\n",
      "reference ../test_cases/remove_noise_edge_preserving.ipynb 9\n",
      "reference ../test_cases/remove_small_labels.ipynb 9\n",
      "reference ../test_cases/return_hello_world.ipynb 9\n",
      "reference ../test_cases/rgb_to_grey_image_transform.ipynb 9\n",
      "reference ../test_cases/rotate_image_by_90_degrees.ipynb 9\n",
      "reference ../test_cases/subsample_image.ipynb 9\n",
      "reference ../test_cases/subtract_background_tophat.ipynb 9\n",
      "reference ../test_cases/sum_images.ipynb 9\n",
      "reference ../test_cases/sum_intensity_projection.ipynb 9\n",
      "reference ../test_cases/tiled_image_processing.ipynb 9\n",
      "reference ../test_cases/transpose_image_axes.ipynb 9\n",
      "reference ../test_cases/t_test.ipynb 9\n",
      "reference ../test_cases/workflow_batch_process_folder_count_labels.ipynb 9\n",
      "reference ../test_cases/workflow_batch_process_folder_measure_intensity.ipynb 9\n",
      "reference ../test_cases/workflow_segmentation_counting.ipynb 9\n",
      "reference ../test_cases/workflow_segmentation_measurement_summary.ipynb 9\n",
      "reference ../test_cases/workflow_segment_measure_umap.ipynb 9\n",
      "reference ../test_cases/workflow_watershed_segmentation_correction_measurement.ipynb 9\n",
      "gpt-3.5-turbo-1106 ../test_cases/apply_otsu_threshold_and_count_postiive_pixels.ipynb 0\n",
      "gpt-3.5-turbo-1106 ../test_cases/binary_closing.ipynb 0\n",
      "gpt-3.5-turbo-1106 ../test_cases/binary_skeleton.ipynb 0\n",
      "gpt-3.5-turbo-1106 ../test_cases/bland_altman.ipynb 0\n",
      "gpt-3.5-turbo-1106 ../test_cases/combine_columns_of_tables.ipynb 0\n",
      "gpt-3.5-turbo-1106 ../test_cases/convex_hull_measure_area.ipynb 0\n",
      "gpt-3.5-turbo-1106 ../test_cases/convolve_images.ipynb 0\n",
      "gpt-3.5-turbo-1106 ../test_cases/count_number_of_touching_neighbors.ipynb 0\n",
      "gpt-3.5-turbo-1106 ../test_cases/count_objects_over_time.ipynb 0\n",
      "gpt-3.5-turbo-1106 ../test_cases/count_overlapping_regions.ipynb 0\n",
      "gpt-3.5-turbo-1106 ../test_cases/create_umap.ipynb 0\n",
      "gpt-3.5-turbo-1106 ../test_cases/crop_quarter_image.ipynb 0\n",
      "gpt-3.5-turbo-1106 ../test_cases/deconvolve_image.ipynb 0\n",
      "gpt-3.5-turbo-1106 ../test_cases/detect_edges.ipynb 0\n",
      "gpt-3.5-turbo-1106 ../test_cases/expand_labels_without_overlap.ipynb 0\n",
      "gpt-3.5-turbo-1106 ../test_cases/extract_surface_measure_area.ipynb 0\n",
      "gpt-3.5-turbo-1106 ../test_cases/fit_circle.ipynb 0\n",
      "gpt-3.5-turbo-1106 ../test_cases/label_binary_image_and_count_labels.ipynb 0\n",
      "gpt-3.5-turbo-1106 ../test_cases/label_sequentially.ipynb 0\n",
      "gpt-3.5-turbo-1106 ../test_cases/list_image_files_in_folder.ipynb 0\n",
      "gpt-3.5-turbo-1106 ../test_cases/map_pixel_count_of_labels.ipynb 0\n",
      "gpt-3.5-turbo-1106 ../test_cases/mask_image.ipynb 0\n",
      "gpt-3.5-turbo-1106 ../test_cases/maximum_intensity_projection.ipynb 0\n",
      "gpt-3.5-turbo-1106 ../test_cases/mean_squared_error.ipynb 0\n",
      "gpt-3.5-turbo-1106 ../test_cases/mean_std_column.ipynb 0\n",
      "gpt-3.5-turbo-1106 ../test_cases/measure_aspect_ratio_of_regions.ipynb 0\n",
      "gpt-3.5-turbo-1106 ../test_cases/measure_intensity_of_labels.ipynb 0\n",
      "gpt-3.5-turbo-1106 ../test_cases/measure_intensity_over_time.ipynb 0\n",
      "gpt-3.5-turbo-1106 ../test_cases/measure_mean_image_intensity.ipynb 0\n",
      "gpt-3.5-turbo-1106 ../test_cases/measure_pixel_count_of_labels.ipynb 0\n",
      "gpt-3.5-turbo-1106 ../test_cases/measure_properties_of_regions.ipynb 0\n",
      "gpt-3.5-turbo-1106 ../test_cases/open_image_read_voxel_size.ipynb 0\n",
      "gpt-3.5-turbo-1106 ../test_cases/open_image_return_dimensions.ipynb 0\n",
      "gpt-3.5-turbo-1106 ../test_cases/open_nifti_image.ipynb 0\n",
      "gpt-3.5-turbo-1106 ../test_cases/open_zarr.ipynb 0\n",
      "gpt-3.5-turbo-1106 ../test_cases/pair_wise_correlation_matrix.ipynb 0\n",
      "gpt-3.5-turbo-1106 ../test_cases/radial_intensity_profile.ipynb 0\n",
      "gpt-3.5-turbo-1106 ../test_cases/region_growing_segmentation.ipynb 0\n",
      "gpt-3.5-turbo-1106 ../test_cases/remove_labels_on_edges.ipynb 0\n",
      "gpt-3.5-turbo-1106 ../test_cases/remove_noise_edge_preserving.ipynb 0\n",
      "gpt-3.5-turbo-1106 ../test_cases/remove_small_labels.ipynb 0\n",
      "gpt-3.5-turbo-1106 ../test_cases/return_hello_world.ipynb 0\n",
      "gpt-3.5-turbo-1106 ../test_cases/rgb_to_grey_image_transform.ipynb 0\n",
      "gpt-3.5-turbo-1106 ../test_cases/rotate_image_by_90_degrees.ipynb 0\n",
      "gpt-3.5-turbo-1106 ../test_cases/subsample_image.ipynb 0\n",
      "gpt-3.5-turbo-1106 ../test_cases/subtract_background_tophat.ipynb 0\n",
      "gpt-3.5-turbo-1106 ../test_cases/sum_images.ipynb 0\n",
      "gpt-3.5-turbo-1106 ../test_cases/sum_intensity_projection.ipynb 0\n",
      "gpt-3.5-turbo-1106 ../test_cases/tiled_image_processing.ipynb 0\n",
      "gpt-3.5-turbo-1106 ../test_cases/transpose_image_axes.ipynb 0\n",
      "gpt-3.5-turbo-1106 ../test_cases/t_test.ipynb 0\n",
      "gpt-3.5-turbo-1106 ../test_cases/workflow_batch_process_folder_count_labels.ipynb 0\n",
      "gpt-3.5-turbo-1106 ../test_cases/workflow_batch_process_folder_measure_intensity.ipynb 0\n",
      "gpt-3.5-turbo-1106 ../test_cases/workflow_segmentation_counting.ipynb 0\n",
      "gpt-3.5-turbo-1106 ../test_cases/workflow_segmentation_measurement_summary.ipynb 0\n",
      "gpt-3.5-turbo-1106 ../test_cases/workflow_segment_measure_umap.ipynb 0\n",
      "gpt-3.5-turbo-1106 ../test_cases/workflow_watershed_segmentation_correction_measurement.ipynb 0\n",
      "gpt-3.5-turbo-1106 ../test_cases/apply_otsu_threshold_and_count_postiive_pixels.ipynb 1\n",
      "gpt-3.5-turbo-1106 ../test_cases/binary_closing.ipynb 1\n",
      "gpt-3.5-turbo-1106 ../test_cases/binary_skeleton.ipynb 1\n",
      "gpt-3.5-turbo-1106 ../test_cases/bland_altman.ipynb 1\n",
      "gpt-3.5-turbo-1106 ../test_cases/combine_columns_of_tables.ipynb 1\n",
      "gpt-3.5-turbo-1106 ../test_cases/convex_hull_measure_area.ipynb 1\n",
      "gpt-3.5-turbo-1106 ../test_cases/convolve_images.ipynb 1\n",
      "gpt-3.5-turbo-1106 ../test_cases/count_number_of_touching_neighbors.ipynb 1\n",
      "gpt-3.5-turbo-1106 ../test_cases/count_objects_over_time.ipynb 1\n",
      "gpt-3.5-turbo-1106 ../test_cases/count_overlapping_regions.ipynb 1\n",
      "gpt-3.5-turbo-1106 ../test_cases/create_umap.ipynb 1\n",
      "gpt-3.5-turbo-1106 ../test_cases/crop_quarter_image.ipynb 1\n",
      "gpt-3.5-turbo-1106 ../test_cases/deconvolve_image.ipynb 1\n",
      "gpt-3.5-turbo-1106 ../test_cases/detect_edges.ipynb 1\n",
      "gpt-3.5-turbo-1106 ../test_cases/expand_labels_without_overlap.ipynb 1\n",
      "gpt-3.5-turbo-1106 ../test_cases/extract_surface_measure_area.ipynb 1\n",
      "gpt-3.5-turbo-1106 ../test_cases/fit_circle.ipynb 1\n",
      "gpt-3.5-turbo-1106 ../test_cases/label_binary_image_and_count_labels.ipynb 1\n",
      "gpt-3.5-turbo-1106 ../test_cases/label_sequentially.ipynb 1\n",
      "gpt-3.5-turbo-1106 ../test_cases/list_image_files_in_folder.ipynb 1\n",
      "gpt-3.5-turbo-1106 ../test_cases/map_pixel_count_of_labels.ipynb 1\n",
      "gpt-3.5-turbo-1106 ../test_cases/mask_image.ipynb 1\n",
      "gpt-3.5-turbo-1106 ../test_cases/maximum_intensity_projection.ipynb 1\n",
      "gpt-3.5-turbo-1106 ../test_cases/mean_squared_error.ipynb 1\n",
      "gpt-3.5-turbo-1106 ../test_cases/mean_std_column.ipynb 1\n",
      "gpt-3.5-turbo-1106 ../test_cases/measure_aspect_ratio_of_regions.ipynb 1\n",
      "gpt-3.5-turbo-1106 ../test_cases/measure_intensity_of_labels.ipynb 1\n",
      "gpt-3.5-turbo-1106 ../test_cases/measure_intensity_over_time.ipynb 1\n",
      "gpt-3.5-turbo-1106 ../test_cases/measure_mean_image_intensity.ipynb 1\n",
      "gpt-3.5-turbo-1106 ../test_cases/measure_pixel_count_of_labels.ipynb 1\n",
      "gpt-3.5-turbo-1106 ../test_cases/measure_properties_of_regions.ipynb 1\n",
      "gpt-3.5-turbo-1106 ../test_cases/open_image_read_voxel_size.ipynb 1\n",
      "gpt-3.5-turbo-1106 ../test_cases/open_image_return_dimensions.ipynb 1\n",
      "gpt-3.5-turbo-1106 ../test_cases/open_nifti_image.ipynb 1\n",
      "gpt-3.5-turbo-1106 ../test_cases/open_zarr.ipynb 1\n",
      "gpt-3.5-turbo-1106 ../test_cases/pair_wise_correlation_matrix.ipynb 1\n",
      "gpt-3.5-turbo-1106 ../test_cases/radial_intensity_profile.ipynb 1\n",
      "gpt-3.5-turbo-1106 ../test_cases/region_growing_segmentation.ipynb 1\n",
      "gpt-3.5-turbo-1106 ../test_cases/remove_labels_on_edges.ipynb 1\n",
      "gpt-3.5-turbo-1106 ../test_cases/remove_noise_edge_preserving.ipynb 1\n",
      "gpt-3.5-turbo-1106 ../test_cases/remove_small_labels.ipynb 1\n",
      "gpt-3.5-turbo-1106 ../test_cases/return_hello_world.ipynb 1\n",
      "gpt-3.5-turbo-1106 ../test_cases/rgb_to_grey_image_transform.ipynb 1\n",
      "gpt-3.5-turbo-1106 ../test_cases/rotate_image_by_90_degrees.ipynb 1\n",
      "gpt-3.5-turbo-1106 ../test_cases/subsample_image.ipynb 1\n",
      "gpt-3.5-turbo-1106 ../test_cases/subtract_background_tophat.ipynb 1\n",
      "gpt-3.5-turbo-1106 ../test_cases/sum_images.ipynb 1\n",
      "gpt-3.5-turbo-1106 ../test_cases/sum_intensity_projection.ipynb 1\n",
      "gpt-3.5-turbo-1106 ../test_cases/tiled_image_processing.ipynb 1\n",
      "gpt-3.5-turbo-1106 ../test_cases/transpose_image_axes.ipynb 1\n",
      "gpt-3.5-turbo-1106 ../test_cases/t_test.ipynb 1\n",
      "gpt-3.5-turbo-1106 ../test_cases/workflow_batch_process_folder_count_labels.ipynb 1\n",
      "gpt-3.5-turbo-1106 ../test_cases/workflow_batch_process_folder_measure_intensity.ipynb 1\n",
      "gpt-3.5-turbo-1106 ../test_cases/workflow_segmentation_counting.ipynb 1\n",
      "gpt-3.5-turbo-1106 ../test_cases/workflow_segmentation_measurement_summary.ipynb 1\n",
      "gpt-3.5-turbo-1106 ../test_cases/workflow_segment_measure_umap.ipynb 1\n",
      "gpt-3.5-turbo-1106 ../test_cases/workflow_watershed_segmentation_correction_measurement.ipynb 1\n",
      "gpt-3.5-turbo-1106 ../test_cases/apply_otsu_threshold_and_count_postiive_pixels.ipynb 2\n",
      "gpt-3.5-turbo-1106 ../test_cases/binary_closing.ipynb 2\n",
      "gpt-3.5-turbo-1106 ../test_cases/binary_skeleton.ipynb 2\n",
      "gpt-3.5-turbo-1106 ../test_cases/bland_altman.ipynb 2\n",
      "gpt-3.5-turbo-1106 ../test_cases/combine_columns_of_tables.ipynb 2\n",
      "gpt-3.5-turbo-1106 ../test_cases/convex_hull_measure_area.ipynb 2\n",
      "gpt-3.5-turbo-1106 ../test_cases/convolve_images.ipynb 2\n",
      "gpt-3.5-turbo-1106 ../test_cases/count_number_of_touching_neighbors.ipynb 2\n",
      "gpt-3.5-turbo-1106 ../test_cases/count_objects_over_time.ipynb 2\n",
      "gpt-3.5-turbo-1106 ../test_cases/count_overlapping_regions.ipynb 2\n",
      "gpt-3.5-turbo-1106 ../test_cases/create_umap.ipynb 2\n",
      "gpt-3.5-turbo-1106 ../test_cases/crop_quarter_image.ipynb 2\n",
      "gpt-3.5-turbo-1106 ../test_cases/deconvolve_image.ipynb 2\n",
      "gpt-3.5-turbo-1106 ../test_cases/detect_edges.ipynb 2\n",
      "gpt-3.5-turbo-1106 ../test_cases/expand_labels_without_overlap.ipynb 2\n",
      "gpt-3.5-turbo-1106 ../test_cases/extract_surface_measure_area.ipynb 2\n",
      "gpt-3.5-turbo-1106 ../test_cases/fit_circle.ipynb 2\n",
      "gpt-3.5-turbo-1106 ../test_cases/label_binary_image_and_count_labels.ipynb 2\n",
      "gpt-3.5-turbo-1106 ../test_cases/label_sequentially.ipynb 2\n",
      "gpt-3.5-turbo-1106 ../test_cases/list_image_files_in_folder.ipynb 2\n",
      "gpt-3.5-turbo-1106 ../test_cases/map_pixel_count_of_labels.ipynb 2\n",
      "gpt-3.5-turbo-1106 ../test_cases/mask_image.ipynb 2\n",
      "gpt-3.5-turbo-1106 ../test_cases/maximum_intensity_projection.ipynb 2\n",
      "gpt-3.5-turbo-1106 ../test_cases/mean_squared_error.ipynb 2\n",
      "gpt-3.5-turbo-1106 ../test_cases/mean_std_column.ipynb 2\n",
      "gpt-3.5-turbo-1106 ../test_cases/measure_aspect_ratio_of_regions.ipynb 2\n",
      "gpt-3.5-turbo-1106 ../test_cases/measure_intensity_of_labels.ipynb 2\n",
      "gpt-3.5-turbo-1106 ../test_cases/measure_intensity_over_time.ipynb 2\n",
      "gpt-3.5-turbo-1106 ../test_cases/measure_mean_image_intensity.ipynb 2\n",
      "gpt-3.5-turbo-1106 ../test_cases/measure_pixel_count_of_labels.ipynb 2\n",
      "gpt-3.5-turbo-1106 ../test_cases/measure_properties_of_regions.ipynb 2\n",
      "gpt-3.5-turbo-1106 ../test_cases/open_image_read_voxel_size.ipynb 2\n",
      "gpt-3.5-turbo-1106 ../test_cases/open_image_return_dimensions.ipynb 2\n",
      "gpt-3.5-turbo-1106 ../test_cases/open_nifti_image.ipynb 2\n",
      "gpt-3.5-turbo-1106 ../test_cases/open_zarr.ipynb 2\n",
      "gpt-3.5-turbo-1106 ../test_cases/pair_wise_correlation_matrix.ipynb 2\n",
      "gpt-3.5-turbo-1106 ../test_cases/radial_intensity_profile.ipynb 2\n",
      "gpt-3.5-turbo-1106 ../test_cases/region_growing_segmentation.ipynb 2\n",
      "gpt-3.5-turbo-1106 ../test_cases/remove_labels_on_edges.ipynb 2\n",
      "gpt-3.5-turbo-1106 ../test_cases/remove_noise_edge_preserving.ipynb 2\n",
      "gpt-3.5-turbo-1106 ../test_cases/remove_small_labels.ipynb 2\n",
      "gpt-3.5-turbo-1106 ../test_cases/return_hello_world.ipynb 2\n",
      "gpt-3.5-turbo-1106 ../test_cases/rgb_to_grey_image_transform.ipynb 2\n",
      "gpt-3.5-turbo-1106 ../test_cases/rotate_image_by_90_degrees.ipynb 2\n",
      "gpt-3.5-turbo-1106 ../test_cases/subsample_image.ipynb 2\n",
      "gpt-3.5-turbo-1106 ../test_cases/subtract_background_tophat.ipynb 2\n",
      "gpt-3.5-turbo-1106 ../test_cases/sum_images.ipynb 2\n",
      "gpt-3.5-turbo-1106 ../test_cases/sum_intensity_projection.ipynb 2\n",
      "gpt-3.5-turbo-1106 ../test_cases/tiled_image_processing.ipynb 2\n",
      "gpt-3.5-turbo-1106 ../test_cases/transpose_image_axes.ipynb 2\n",
      "gpt-3.5-turbo-1106 ../test_cases/t_test.ipynb 2\n",
      "gpt-3.5-turbo-1106 ../test_cases/workflow_batch_process_folder_count_labels.ipynb 2\n",
      "gpt-3.5-turbo-1106 ../test_cases/workflow_batch_process_folder_measure_intensity.ipynb 2\n",
      "gpt-3.5-turbo-1106 ../test_cases/workflow_segmentation_counting.ipynb 2\n",
      "gpt-3.5-turbo-1106 ../test_cases/workflow_segmentation_measurement_summary.ipynb 2\n",
      "gpt-3.5-turbo-1106 ../test_cases/workflow_segment_measure_umap.ipynb 2\n",
      "gpt-3.5-turbo-1106 ../test_cases/workflow_watershed_segmentation_correction_measurement.ipynb 2\n",
      "gpt-3.5-turbo-1106 ../test_cases/apply_otsu_threshold_and_count_postiive_pixels.ipynb 3\n",
      "gpt-3.5-turbo-1106 ../test_cases/binary_closing.ipynb 3\n",
      "gpt-3.5-turbo-1106 ../test_cases/binary_skeleton.ipynb 3\n",
      "gpt-3.5-turbo-1106 ../test_cases/bland_altman.ipynb 3\n",
      "gpt-3.5-turbo-1106 ../test_cases/combine_columns_of_tables.ipynb 3\n",
      "gpt-3.5-turbo-1106 ../test_cases/convex_hull_measure_area.ipynb 3\n",
      "gpt-3.5-turbo-1106 ../test_cases/convolve_images.ipynb 3\n",
      "gpt-3.5-turbo-1106 ../test_cases/count_number_of_touching_neighbors.ipynb 3\n",
      "gpt-3.5-turbo-1106 ../test_cases/count_objects_over_time.ipynb 3\n",
      "gpt-3.5-turbo-1106 ../test_cases/count_overlapping_regions.ipynb 3\n",
      "gpt-3.5-turbo-1106 ../test_cases/create_umap.ipynb 3\n",
      "gpt-3.5-turbo-1106 ../test_cases/crop_quarter_image.ipynb 3\n",
      "gpt-3.5-turbo-1106 ../test_cases/deconvolve_image.ipynb 3\n",
      "gpt-3.5-turbo-1106 ../test_cases/detect_edges.ipynb 3\n",
      "gpt-3.5-turbo-1106 ../test_cases/expand_labels_without_overlap.ipynb 3\n",
      "gpt-3.5-turbo-1106 ../test_cases/extract_surface_measure_area.ipynb 3\n",
      "gpt-3.5-turbo-1106 ../test_cases/fit_circle.ipynb 3\n",
      "gpt-3.5-turbo-1106 ../test_cases/label_binary_image_and_count_labels.ipynb 3\n",
      "gpt-3.5-turbo-1106 ../test_cases/label_sequentially.ipynb 3\n",
      "gpt-3.5-turbo-1106 ../test_cases/list_image_files_in_folder.ipynb 3\n",
      "gpt-3.5-turbo-1106 ../test_cases/map_pixel_count_of_labels.ipynb 3\n",
      "gpt-3.5-turbo-1106 ../test_cases/mask_image.ipynb 3\n",
      "gpt-3.5-turbo-1106 ../test_cases/maximum_intensity_projection.ipynb 3\n",
      "gpt-3.5-turbo-1106 ../test_cases/mean_squared_error.ipynb 3\n",
      "gpt-3.5-turbo-1106 ../test_cases/mean_std_column.ipynb 3\n",
      "gpt-3.5-turbo-1106 ../test_cases/measure_aspect_ratio_of_regions.ipynb 3\n",
      "gpt-3.5-turbo-1106 ../test_cases/measure_intensity_of_labels.ipynb 3\n",
      "gpt-3.5-turbo-1106 ../test_cases/measure_intensity_over_time.ipynb 3\n",
      "gpt-3.5-turbo-1106 ../test_cases/measure_mean_image_intensity.ipynb 3\n",
      "gpt-3.5-turbo-1106 ../test_cases/measure_pixel_count_of_labels.ipynb 3\n",
      "gpt-3.5-turbo-1106 ../test_cases/measure_properties_of_regions.ipynb 3\n",
      "gpt-3.5-turbo-1106 ../test_cases/open_image_read_voxel_size.ipynb 3\n",
      "gpt-3.5-turbo-1106 ../test_cases/open_image_return_dimensions.ipynb 3\n",
      "gpt-3.5-turbo-1106 ../test_cases/open_nifti_image.ipynb 3\n",
      "gpt-3.5-turbo-1106 ../test_cases/open_zarr.ipynb 3\n",
      "gpt-3.5-turbo-1106 ../test_cases/pair_wise_correlation_matrix.ipynb 3\n",
      "gpt-3.5-turbo-1106 ../test_cases/radial_intensity_profile.ipynb 3\n",
      "gpt-3.5-turbo-1106 ../test_cases/region_growing_segmentation.ipynb 3\n",
      "gpt-3.5-turbo-1106 ../test_cases/remove_labels_on_edges.ipynb 3\n",
      "gpt-3.5-turbo-1106 ../test_cases/remove_noise_edge_preserving.ipynb 3\n",
      "gpt-3.5-turbo-1106 ../test_cases/remove_small_labels.ipynb 3\n",
      "gpt-3.5-turbo-1106 ../test_cases/return_hello_world.ipynb 3\n",
      "gpt-3.5-turbo-1106 ../test_cases/rgb_to_grey_image_transform.ipynb 3\n",
      "gpt-3.5-turbo-1106 ../test_cases/rotate_image_by_90_degrees.ipynb 3\n",
      "gpt-3.5-turbo-1106 ../test_cases/subsample_image.ipynb 3\n",
      "gpt-3.5-turbo-1106 ../test_cases/subtract_background_tophat.ipynb 3\n",
      "gpt-3.5-turbo-1106 ../test_cases/sum_images.ipynb 3\n",
      "gpt-3.5-turbo-1106 ../test_cases/sum_intensity_projection.ipynb 3\n",
      "gpt-3.5-turbo-1106 ../test_cases/tiled_image_processing.ipynb 3\n",
      "gpt-3.5-turbo-1106 ../test_cases/transpose_image_axes.ipynb 3\n",
      "gpt-3.5-turbo-1106 ../test_cases/t_test.ipynb 3\n",
      "gpt-3.5-turbo-1106 ../test_cases/workflow_batch_process_folder_count_labels.ipynb 3\n",
      "gpt-3.5-turbo-1106 ../test_cases/workflow_batch_process_folder_measure_intensity.ipynb 3\n",
      "gpt-3.5-turbo-1106 ../test_cases/workflow_segmentation_counting.ipynb 3\n",
      "gpt-3.5-turbo-1106 ../test_cases/workflow_segmentation_measurement_summary.ipynb 3\n",
      "gpt-3.5-turbo-1106 ../test_cases/workflow_segment_measure_umap.ipynb 3\n",
      "gpt-3.5-turbo-1106 ../test_cases/workflow_watershed_segmentation_correction_measurement.ipynb 3\n",
      "gpt-3.5-turbo-1106 ../test_cases/apply_otsu_threshold_and_count_postiive_pixels.ipynb 4\n",
      "gpt-3.5-turbo-1106 ../test_cases/binary_closing.ipynb 4\n",
      "gpt-3.5-turbo-1106 ../test_cases/binary_skeleton.ipynb 4\n",
      "gpt-3.5-turbo-1106 ../test_cases/bland_altman.ipynb 4\n",
      "gpt-3.5-turbo-1106 ../test_cases/combine_columns_of_tables.ipynb 4\n",
      "gpt-3.5-turbo-1106 ../test_cases/convex_hull_measure_area.ipynb 4\n",
      "gpt-3.5-turbo-1106 ../test_cases/convolve_images.ipynb 4\n",
      "gpt-3.5-turbo-1106 ../test_cases/count_number_of_touching_neighbors.ipynb 4\n",
      "gpt-3.5-turbo-1106 ../test_cases/count_objects_over_time.ipynb 4\n",
      "gpt-3.5-turbo-1106 ../test_cases/count_overlapping_regions.ipynb 4\n",
      "gpt-3.5-turbo-1106 ../test_cases/create_umap.ipynb 4\n",
      "gpt-3.5-turbo-1106 ../test_cases/crop_quarter_image.ipynb 4\n",
      "gpt-3.5-turbo-1106 ../test_cases/deconvolve_image.ipynb 4\n",
      "gpt-3.5-turbo-1106 ../test_cases/detect_edges.ipynb 4\n",
      "gpt-3.5-turbo-1106 ../test_cases/expand_labels_without_overlap.ipynb 4\n",
      "gpt-3.5-turbo-1106 ../test_cases/extract_surface_measure_area.ipynb 4\n",
      "gpt-3.5-turbo-1106 ../test_cases/fit_circle.ipynb 4\n",
      "gpt-3.5-turbo-1106 ../test_cases/label_binary_image_and_count_labels.ipynb 4\n",
      "gpt-3.5-turbo-1106 ../test_cases/label_sequentially.ipynb 4\n",
      "gpt-3.5-turbo-1106 ../test_cases/list_image_files_in_folder.ipynb 4\n",
      "gpt-3.5-turbo-1106 ../test_cases/map_pixel_count_of_labels.ipynb 4\n",
      "gpt-3.5-turbo-1106 ../test_cases/mask_image.ipynb 4\n",
      "gpt-3.5-turbo-1106 ../test_cases/maximum_intensity_projection.ipynb 4\n",
      "gpt-3.5-turbo-1106 ../test_cases/mean_squared_error.ipynb 4\n",
      "gpt-3.5-turbo-1106 ../test_cases/mean_std_column.ipynb 4\n",
      "gpt-3.5-turbo-1106 ../test_cases/measure_aspect_ratio_of_regions.ipynb 4\n",
      "gpt-3.5-turbo-1106 ../test_cases/measure_intensity_of_labels.ipynb 4\n",
      "gpt-3.5-turbo-1106 ../test_cases/measure_intensity_over_time.ipynb 4\n",
      "gpt-3.5-turbo-1106 ../test_cases/measure_mean_image_intensity.ipynb 4\n",
      "gpt-3.5-turbo-1106 ../test_cases/measure_pixel_count_of_labels.ipynb 4\n",
      "gpt-3.5-turbo-1106 ../test_cases/measure_properties_of_regions.ipynb 4\n",
      "gpt-3.5-turbo-1106 ../test_cases/open_image_read_voxel_size.ipynb 4\n",
      "gpt-3.5-turbo-1106 ../test_cases/open_image_return_dimensions.ipynb 4\n",
      "gpt-3.5-turbo-1106 ../test_cases/open_nifti_image.ipynb 4\n",
      "gpt-3.5-turbo-1106 ../test_cases/open_zarr.ipynb 4\n",
      "gpt-3.5-turbo-1106 ../test_cases/pair_wise_correlation_matrix.ipynb 4\n",
      "gpt-3.5-turbo-1106 ../test_cases/radial_intensity_profile.ipynb 4\n",
      "gpt-3.5-turbo-1106 ../test_cases/region_growing_segmentation.ipynb 4\n",
      "gpt-3.5-turbo-1106 ../test_cases/remove_labels_on_edges.ipynb 4\n",
      "gpt-3.5-turbo-1106 ../test_cases/remove_noise_edge_preserving.ipynb 4\n",
      "gpt-3.5-turbo-1106 ../test_cases/remove_small_labels.ipynb 4\n",
      "gpt-3.5-turbo-1106 ../test_cases/return_hello_world.ipynb 4\n",
      "gpt-3.5-turbo-1106 ../test_cases/rgb_to_grey_image_transform.ipynb 4\n",
      "gpt-3.5-turbo-1106 ../test_cases/rotate_image_by_90_degrees.ipynb 4\n",
      "gpt-3.5-turbo-1106 ../test_cases/subsample_image.ipynb 4\n",
      "gpt-3.5-turbo-1106 ../test_cases/subtract_background_tophat.ipynb 4\n",
      "gpt-3.5-turbo-1106 ../test_cases/sum_images.ipynb 4\n",
      "gpt-3.5-turbo-1106 ../test_cases/sum_intensity_projection.ipynb 4\n",
      "gpt-3.5-turbo-1106 ../test_cases/tiled_image_processing.ipynb 4\n",
      "gpt-3.5-turbo-1106 ../test_cases/transpose_image_axes.ipynb 4\n",
      "gpt-3.5-turbo-1106 ../test_cases/t_test.ipynb 4\n",
      "gpt-3.5-turbo-1106 ../test_cases/workflow_batch_process_folder_count_labels.ipynb 4\n",
      "gpt-3.5-turbo-1106 ../test_cases/workflow_batch_process_folder_measure_intensity.ipynb 4\n",
      "gpt-3.5-turbo-1106 ../test_cases/workflow_segmentation_counting.ipynb 4\n",
      "gpt-3.5-turbo-1106 ../test_cases/workflow_segmentation_measurement_summary.ipynb 4\n",
      "gpt-3.5-turbo-1106 ../test_cases/workflow_segment_measure_umap.ipynb 4\n",
      "gpt-3.5-turbo-1106 ../test_cases/workflow_watershed_segmentation_correction_measurement.ipynb 4\n",
      "gpt-3.5-turbo-1106 ../test_cases/apply_otsu_threshold_and_count_postiive_pixels.ipynb 5\n",
      "gpt-3.5-turbo-1106 ../test_cases/binary_closing.ipynb 5\n",
      "gpt-3.5-turbo-1106 ../test_cases/binary_skeleton.ipynb 5\n",
      "gpt-3.5-turbo-1106 ../test_cases/bland_altman.ipynb 5\n",
      "gpt-3.5-turbo-1106 ../test_cases/combine_columns_of_tables.ipynb 5\n",
      "gpt-3.5-turbo-1106 ../test_cases/convex_hull_measure_area.ipynb 5\n",
      "gpt-3.5-turbo-1106 ../test_cases/convolve_images.ipynb 5\n",
      "gpt-3.5-turbo-1106 ../test_cases/count_number_of_touching_neighbors.ipynb 5\n",
      "gpt-3.5-turbo-1106 ../test_cases/count_objects_over_time.ipynb 5\n",
      "gpt-3.5-turbo-1106 ../test_cases/count_overlapping_regions.ipynb 5\n",
      "gpt-3.5-turbo-1106 ../test_cases/create_umap.ipynb 5\n",
      "gpt-3.5-turbo-1106 ../test_cases/crop_quarter_image.ipynb 5\n",
      "gpt-3.5-turbo-1106 ../test_cases/deconvolve_image.ipynb 5\n",
      "gpt-3.5-turbo-1106 ../test_cases/detect_edges.ipynb 5\n",
      "gpt-3.5-turbo-1106 ../test_cases/expand_labels_without_overlap.ipynb 5\n",
      "gpt-3.5-turbo-1106 ../test_cases/extract_surface_measure_area.ipynb 5\n",
      "gpt-3.5-turbo-1106 ../test_cases/fit_circle.ipynb 5\n",
      "gpt-3.5-turbo-1106 ../test_cases/label_binary_image_and_count_labels.ipynb 5\n",
      "gpt-3.5-turbo-1106 ../test_cases/label_sequentially.ipynb 5\n",
      "gpt-3.5-turbo-1106 ../test_cases/list_image_files_in_folder.ipynb 5\n",
      "gpt-3.5-turbo-1106 ../test_cases/map_pixel_count_of_labels.ipynb 5\n",
      "gpt-3.5-turbo-1106 ../test_cases/mask_image.ipynb 5\n",
      "gpt-3.5-turbo-1106 ../test_cases/maximum_intensity_projection.ipynb 5\n",
      "gpt-3.5-turbo-1106 ../test_cases/mean_squared_error.ipynb 5\n",
      "gpt-3.5-turbo-1106 ../test_cases/mean_std_column.ipynb 5\n",
      "gpt-3.5-turbo-1106 ../test_cases/measure_aspect_ratio_of_regions.ipynb 5\n",
      "gpt-3.5-turbo-1106 ../test_cases/measure_intensity_of_labels.ipynb 5\n",
      "gpt-3.5-turbo-1106 ../test_cases/measure_intensity_over_time.ipynb 5\n",
      "gpt-3.5-turbo-1106 ../test_cases/measure_mean_image_intensity.ipynb 5\n",
      "gpt-3.5-turbo-1106 ../test_cases/measure_pixel_count_of_labels.ipynb 5\n",
      "gpt-3.5-turbo-1106 ../test_cases/measure_properties_of_regions.ipynb 5\n",
      "gpt-3.5-turbo-1106 ../test_cases/open_image_read_voxel_size.ipynb 5\n",
      "gpt-3.5-turbo-1106 ../test_cases/open_image_return_dimensions.ipynb 5\n",
      "gpt-3.5-turbo-1106 ../test_cases/open_nifti_image.ipynb 5\n",
      "gpt-3.5-turbo-1106 ../test_cases/open_zarr.ipynb 5\n",
      "gpt-3.5-turbo-1106 ../test_cases/pair_wise_correlation_matrix.ipynb 5\n",
      "gpt-3.5-turbo-1106 ../test_cases/radial_intensity_profile.ipynb 5\n",
      "gpt-3.5-turbo-1106 ../test_cases/region_growing_segmentation.ipynb 5\n",
      "gpt-3.5-turbo-1106 ../test_cases/remove_labels_on_edges.ipynb 5\n",
      "gpt-3.5-turbo-1106 ../test_cases/remove_noise_edge_preserving.ipynb 5\n",
      "gpt-3.5-turbo-1106 ../test_cases/remove_small_labels.ipynb 5\n",
      "gpt-3.5-turbo-1106 ../test_cases/return_hello_world.ipynb 5\n",
      "gpt-3.5-turbo-1106 ../test_cases/rgb_to_grey_image_transform.ipynb 5\n",
      "gpt-3.5-turbo-1106 ../test_cases/rotate_image_by_90_degrees.ipynb 5\n",
      "gpt-3.5-turbo-1106 ../test_cases/subsample_image.ipynb 5\n",
      "gpt-3.5-turbo-1106 ../test_cases/subtract_background_tophat.ipynb 5\n",
      "gpt-3.5-turbo-1106 ../test_cases/sum_images.ipynb 5\n",
      "gpt-3.5-turbo-1106 ../test_cases/sum_intensity_projection.ipynb 5\n",
      "gpt-3.5-turbo-1106 ../test_cases/tiled_image_processing.ipynb 5\n",
      "gpt-3.5-turbo-1106 ../test_cases/transpose_image_axes.ipynb 5\n",
      "gpt-3.5-turbo-1106 ../test_cases/t_test.ipynb 5\n",
      "gpt-3.5-turbo-1106 ../test_cases/workflow_batch_process_folder_count_labels.ipynb 5\n",
      "gpt-3.5-turbo-1106 ../test_cases/workflow_batch_process_folder_measure_intensity.ipynb 5\n",
      "gpt-3.5-turbo-1106 ../test_cases/workflow_segmentation_counting.ipynb 5\n",
      "gpt-3.5-turbo-1106 ../test_cases/workflow_segmentation_measurement_summary.ipynb 5\n",
      "gpt-3.5-turbo-1106 ../test_cases/workflow_segment_measure_umap.ipynb 5\n",
      "gpt-3.5-turbo-1106 ../test_cases/workflow_watershed_segmentation_correction_measurement.ipynb 5\n",
      "gpt-3.5-turbo-1106 ../test_cases/apply_otsu_threshold_and_count_postiive_pixels.ipynb 6\n",
      "gpt-3.5-turbo-1106 ../test_cases/binary_closing.ipynb 6\n",
      "gpt-3.5-turbo-1106 ../test_cases/binary_skeleton.ipynb 6\n",
      "gpt-3.5-turbo-1106 ../test_cases/bland_altman.ipynb 6\n",
      "gpt-3.5-turbo-1106 ../test_cases/combine_columns_of_tables.ipynb 6\n",
      "gpt-3.5-turbo-1106 ../test_cases/convex_hull_measure_area.ipynb 6\n",
      "gpt-3.5-turbo-1106 ../test_cases/convolve_images.ipynb 6\n",
      "gpt-3.5-turbo-1106 ../test_cases/count_number_of_touching_neighbors.ipynb 6\n",
      "gpt-3.5-turbo-1106 ../test_cases/count_objects_over_time.ipynb 6\n",
      "gpt-3.5-turbo-1106 ../test_cases/count_overlapping_regions.ipynb 6\n",
      "gpt-3.5-turbo-1106 ../test_cases/create_umap.ipynb 6\n",
      "gpt-3.5-turbo-1106 ../test_cases/crop_quarter_image.ipynb 6\n",
      "gpt-3.5-turbo-1106 ../test_cases/deconvolve_image.ipynb 6\n",
      "gpt-3.5-turbo-1106 ../test_cases/detect_edges.ipynb 6\n",
      "gpt-3.5-turbo-1106 ../test_cases/expand_labels_without_overlap.ipynb 6\n",
      "gpt-3.5-turbo-1106 ../test_cases/extract_surface_measure_area.ipynb 6\n",
      "gpt-3.5-turbo-1106 ../test_cases/fit_circle.ipynb 6\n",
      "gpt-3.5-turbo-1106 ../test_cases/label_binary_image_and_count_labels.ipynb 6\n",
      "gpt-3.5-turbo-1106 ../test_cases/label_sequentially.ipynb 6\n",
      "gpt-3.5-turbo-1106 ../test_cases/list_image_files_in_folder.ipynb 6\n",
      "gpt-3.5-turbo-1106 ../test_cases/map_pixel_count_of_labels.ipynb 6\n",
      "gpt-3.5-turbo-1106 ../test_cases/mask_image.ipynb 6\n",
      "gpt-3.5-turbo-1106 ../test_cases/maximum_intensity_projection.ipynb 6\n",
      "gpt-3.5-turbo-1106 ../test_cases/mean_squared_error.ipynb 6\n",
      "gpt-3.5-turbo-1106 ../test_cases/mean_std_column.ipynb 6\n",
      "gpt-3.5-turbo-1106 ../test_cases/measure_aspect_ratio_of_regions.ipynb 6\n",
      "gpt-3.5-turbo-1106 ../test_cases/measure_intensity_of_labels.ipynb 6\n",
      "gpt-3.5-turbo-1106 ../test_cases/measure_intensity_over_time.ipynb 6\n",
      "gpt-3.5-turbo-1106 ../test_cases/measure_mean_image_intensity.ipynb 6\n",
      "gpt-3.5-turbo-1106 ../test_cases/measure_pixel_count_of_labels.ipynb 6\n",
      "gpt-3.5-turbo-1106 ../test_cases/measure_properties_of_regions.ipynb 6\n",
      "gpt-3.5-turbo-1106 ../test_cases/open_image_read_voxel_size.ipynb 6\n",
      "gpt-3.5-turbo-1106 ../test_cases/open_image_return_dimensions.ipynb 6\n",
      "gpt-3.5-turbo-1106 ../test_cases/open_nifti_image.ipynb 6\n",
      "gpt-3.5-turbo-1106 ../test_cases/open_zarr.ipynb 6\n",
      "gpt-3.5-turbo-1106 ../test_cases/pair_wise_correlation_matrix.ipynb 6\n",
      "gpt-3.5-turbo-1106 ../test_cases/radial_intensity_profile.ipynb 6\n",
      "gpt-3.5-turbo-1106 ../test_cases/region_growing_segmentation.ipynb 6\n",
      "gpt-3.5-turbo-1106 ../test_cases/remove_labels_on_edges.ipynb 6\n",
      "gpt-3.5-turbo-1106 ../test_cases/remove_noise_edge_preserving.ipynb 6\n",
      "gpt-3.5-turbo-1106 ../test_cases/remove_small_labels.ipynb 6\n",
      "gpt-3.5-turbo-1106 ../test_cases/return_hello_world.ipynb 6\n",
      "gpt-3.5-turbo-1106 ../test_cases/rgb_to_grey_image_transform.ipynb 6\n",
      "gpt-3.5-turbo-1106 ../test_cases/rotate_image_by_90_degrees.ipynb 6\n",
      "gpt-3.5-turbo-1106 ../test_cases/subsample_image.ipynb 6\n",
      "gpt-3.5-turbo-1106 ../test_cases/subtract_background_tophat.ipynb 6\n",
      "gpt-3.5-turbo-1106 ../test_cases/sum_images.ipynb 6\n",
      "gpt-3.5-turbo-1106 ../test_cases/sum_intensity_projection.ipynb 6\n",
      "gpt-3.5-turbo-1106 ../test_cases/tiled_image_processing.ipynb 6\n",
      "gpt-3.5-turbo-1106 ../test_cases/transpose_image_axes.ipynb 6\n",
      "gpt-3.5-turbo-1106 ../test_cases/t_test.ipynb 6\n",
      "gpt-3.5-turbo-1106 ../test_cases/workflow_batch_process_folder_count_labels.ipynb 6\n",
      "gpt-3.5-turbo-1106 ../test_cases/workflow_batch_process_folder_measure_intensity.ipynb 6\n",
      "gpt-3.5-turbo-1106 ../test_cases/workflow_segmentation_counting.ipynb 6\n",
      "gpt-3.5-turbo-1106 ../test_cases/workflow_segmentation_measurement_summary.ipynb 6\n",
      "gpt-3.5-turbo-1106 ../test_cases/workflow_segment_measure_umap.ipynb 6\n",
      "gpt-3.5-turbo-1106 ../test_cases/workflow_watershed_segmentation_correction_measurement.ipynb 6\n",
      "gpt-3.5-turbo-1106 ../test_cases/apply_otsu_threshold_and_count_postiive_pixels.ipynb 7\n",
      "gpt-3.5-turbo-1106 ../test_cases/binary_closing.ipynb 7\n",
      "gpt-3.5-turbo-1106 ../test_cases/binary_skeleton.ipynb 7\n",
      "gpt-3.5-turbo-1106 ../test_cases/bland_altman.ipynb 7\n",
      "gpt-3.5-turbo-1106 ../test_cases/combine_columns_of_tables.ipynb 7\n",
      "gpt-3.5-turbo-1106 ../test_cases/convex_hull_measure_area.ipynb 7\n",
      "gpt-3.5-turbo-1106 ../test_cases/convolve_images.ipynb 7\n",
      "gpt-3.5-turbo-1106 ../test_cases/count_number_of_touching_neighbors.ipynb 7\n",
      "gpt-3.5-turbo-1106 ../test_cases/count_objects_over_time.ipynb 7\n",
      "gpt-3.5-turbo-1106 ../test_cases/count_overlapping_regions.ipynb 7\n",
      "gpt-3.5-turbo-1106 ../test_cases/create_umap.ipynb 7\n",
      "gpt-3.5-turbo-1106 ../test_cases/crop_quarter_image.ipynb 7\n",
      "gpt-3.5-turbo-1106 ../test_cases/deconvolve_image.ipynb 7\n",
      "gpt-3.5-turbo-1106 ../test_cases/detect_edges.ipynb 7\n",
      "gpt-3.5-turbo-1106 ../test_cases/expand_labels_without_overlap.ipynb 7\n",
      "gpt-3.5-turbo-1106 ../test_cases/extract_surface_measure_area.ipynb 7\n",
      "gpt-3.5-turbo-1106 ../test_cases/fit_circle.ipynb 7\n",
      "gpt-3.5-turbo-1106 ../test_cases/label_binary_image_and_count_labels.ipynb 7\n",
      "gpt-3.5-turbo-1106 ../test_cases/label_sequentially.ipynb 7\n",
      "gpt-3.5-turbo-1106 ../test_cases/list_image_files_in_folder.ipynb 7\n",
      "gpt-3.5-turbo-1106 ../test_cases/map_pixel_count_of_labels.ipynb 7\n",
      "gpt-3.5-turbo-1106 ../test_cases/mask_image.ipynb 7\n",
      "gpt-3.5-turbo-1106 ../test_cases/maximum_intensity_projection.ipynb 7\n",
      "gpt-3.5-turbo-1106 ../test_cases/mean_squared_error.ipynb 7\n",
      "gpt-3.5-turbo-1106 ../test_cases/mean_std_column.ipynb 7\n",
      "gpt-3.5-turbo-1106 ../test_cases/measure_aspect_ratio_of_regions.ipynb 7\n",
      "gpt-3.5-turbo-1106 ../test_cases/measure_intensity_of_labels.ipynb 7\n",
      "gpt-3.5-turbo-1106 ../test_cases/measure_intensity_over_time.ipynb 7\n",
      "gpt-3.5-turbo-1106 ../test_cases/measure_mean_image_intensity.ipynb 7\n",
      "gpt-3.5-turbo-1106 ../test_cases/measure_pixel_count_of_labels.ipynb 7\n",
      "gpt-3.5-turbo-1106 ../test_cases/measure_properties_of_regions.ipynb 7\n",
      "gpt-3.5-turbo-1106 ../test_cases/open_image_read_voxel_size.ipynb 7\n",
      "gpt-3.5-turbo-1106 ../test_cases/open_image_return_dimensions.ipynb 7\n",
      "gpt-3.5-turbo-1106 ../test_cases/open_nifti_image.ipynb 7\n",
      "gpt-3.5-turbo-1106 ../test_cases/open_zarr.ipynb 7\n",
      "gpt-3.5-turbo-1106 ../test_cases/pair_wise_correlation_matrix.ipynb 7\n",
      "gpt-3.5-turbo-1106 ../test_cases/radial_intensity_profile.ipynb 7\n",
      "gpt-3.5-turbo-1106 ../test_cases/region_growing_segmentation.ipynb 7\n",
      "gpt-3.5-turbo-1106 ../test_cases/remove_labels_on_edges.ipynb 7\n",
      "gpt-3.5-turbo-1106 ../test_cases/remove_noise_edge_preserving.ipynb 7\n",
      "gpt-3.5-turbo-1106 ../test_cases/remove_small_labels.ipynb 7\n",
      "gpt-3.5-turbo-1106 ../test_cases/return_hello_world.ipynb 7\n",
      "gpt-3.5-turbo-1106 ../test_cases/rgb_to_grey_image_transform.ipynb 7\n",
      "gpt-3.5-turbo-1106 ../test_cases/rotate_image_by_90_degrees.ipynb 7\n",
      "gpt-3.5-turbo-1106 ../test_cases/subsample_image.ipynb 7\n",
      "gpt-3.5-turbo-1106 ../test_cases/subtract_background_tophat.ipynb 7\n",
      "gpt-3.5-turbo-1106 ../test_cases/sum_images.ipynb 7\n",
      "gpt-3.5-turbo-1106 ../test_cases/sum_intensity_projection.ipynb 7\n",
      "gpt-3.5-turbo-1106 ../test_cases/tiled_image_processing.ipynb 7\n",
      "gpt-3.5-turbo-1106 ../test_cases/transpose_image_axes.ipynb 7\n",
      "gpt-3.5-turbo-1106 ../test_cases/t_test.ipynb 7\n",
      "gpt-3.5-turbo-1106 ../test_cases/workflow_batch_process_folder_count_labels.ipynb 7\n",
      "gpt-3.5-turbo-1106 ../test_cases/workflow_batch_process_folder_measure_intensity.ipynb 7\n",
      "gpt-3.5-turbo-1106 ../test_cases/workflow_segmentation_counting.ipynb 7\n",
      "gpt-3.5-turbo-1106 ../test_cases/workflow_segmentation_measurement_summary.ipynb 7\n",
      "gpt-3.5-turbo-1106 ../test_cases/workflow_segment_measure_umap.ipynb 7\n",
      "gpt-3.5-turbo-1106 ../test_cases/workflow_watershed_segmentation_correction_measurement.ipynb 7\n",
      "gpt-3.5-turbo-1106 ../test_cases/apply_otsu_threshold_and_count_postiive_pixels.ipynb 8\n",
      "gpt-3.5-turbo-1106 ../test_cases/binary_closing.ipynb 8\n",
      "gpt-3.5-turbo-1106 ../test_cases/binary_skeleton.ipynb 8\n",
      "gpt-3.5-turbo-1106 ../test_cases/bland_altman.ipynb 8\n",
      "gpt-3.5-turbo-1106 ../test_cases/combine_columns_of_tables.ipynb 8\n",
      "gpt-3.5-turbo-1106 ../test_cases/convex_hull_measure_area.ipynb 8\n",
      "gpt-3.5-turbo-1106 ../test_cases/convolve_images.ipynb 8\n",
      "gpt-3.5-turbo-1106 ../test_cases/count_number_of_touching_neighbors.ipynb 8\n",
      "gpt-3.5-turbo-1106 ../test_cases/count_objects_over_time.ipynb 8\n",
      "gpt-3.5-turbo-1106 ../test_cases/count_overlapping_regions.ipynb 8\n",
      "gpt-3.5-turbo-1106 ../test_cases/create_umap.ipynb 8\n",
      "gpt-3.5-turbo-1106 ../test_cases/crop_quarter_image.ipynb 8\n",
      "gpt-3.5-turbo-1106 ../test_cases/deconvolve_image.ipynb 8\n",
      "gpt-3.5-turbo-1106 ../test_cases/detect_edges.ipynb 8\n",
      "gpt-3.5-turbo-1106 ../test_cases/expand_labels_without_overlap.ipynb 8\n",
      "gpt-3.5-turbo-1106 ../test_cases/extract_surface_measure_area.ipynb 8\n",
      "gpt-3.5-turbo-1106 ../test_cases/fit_circle.ipynb 8\n",
      "gpt-3.5-turbo-1106 ../test_cases/label_binary_image_and_count_labels.ipynb 8\n",
      "gpt-3.5-turbo-1106 ../test_cases/label_sequentially.ipynb 8\n",
      "gpt-3.5-turbo-1106 ../test_cases/list_image_files_in_folder.ipynb 8\n",
      "gpt-3.5-turbo-1106 ../test_cases/map_pixel_count_of_labels.ipynb 8\n",
      "gpt-3.5-turbo-1106 ../test_cases/mask_image.ipynb 8\n",
      "gpt-3.5-turbo-1106 ../test_cases/maximum_intensity_projection.ipynb 8\n",
      "gpt-3.5-turbo-1106 ../test_cases/mean_squared_error.ipynb 8\n",
      "gpt-3.5-turbo-1106 ../test_cases/mean_std_column.ipynb 8\n",
      "gpt-3.5-turbo-1106 ../test_cases/measure_aspect_ratio_of_regions.ipynb 8\n",
      "gpt-3.5-turbo-1106 ../test_cases/measure_intensity_of_labels.ipynb 8\n",
      "gpt-3.5-turbo-1106 ../test_cases/measure_intensity_over_time.ipynb 8\n",
      "gpt-3.5-turbo-1106 ../test_cases/measure_mean_image_intensity.ipynb 8\n",
      "gpt-3.5-turbo-1106 ../test_cases/measure_pixel_count_of_labels.ipynb 8\n",
      "gpt-3.5-turbo-1106 ../test_cases/measure_properties_of_regions.ipynb 8\n",
      "gpt-3.5-turbo-1106 ../test_cases/open_image_read_voxel_size.ipynb 8\n",
      "gpt-3.5-turbo-1106 ../test_cases/open_image_return_dimensions.ipynb 8\n",
      "gpt-3.5-turbo-1106 ../test_cases/open_nifti_image.ipynb 8\n",
      "gpt-3.5-turbo-1106 ../test_cases/open_zarr.ipynb 8\n",
      "gpt-3.5-turbo-1106 ../test_cases/pair_wise_correlation_matrix.ipynb 8\n",
      "gpt-3.5-turbo-1106 ../test_cases/radial_intensity_profile.ipynb 8\n",
      "gpt-3.5-turbo-1106 ../test_cases/region_growing_segmentation.ipynb 8\n",
      "gpt-3.5-turbo-1106 ../test_cases/remove_labels_on_edges.ipynb 8\n",
      "gpt-3.5-turbo-1106 ../test_cases/remove_noise_edge_preserving.ipynb 8\n",
      "gpt-3.5-turbo-1106 ../test_cases/remove_small_labels.ipynb 8\n",
      "gpt-3.5-turbo-1106 ../test_cases/return_hello_world.ipynb 8\n",
      "gpt-3.5-turbo-1106 ../test_cases/rgb_to_grey_image_transform.ipynb 8\n",
      "gpt-3.5-turbo-1106 ../test_cases/rotate_image_by_90_degrees.ipynb 8\n",
      "gpt-3.5-turbo-1106 ../test_cases/subsample_image.ipynb 8\n",
      "gpt-3.5-turbo-1106 ../test_cases/subtract_background_tophat.ipynb 8\n",
      "gpt-3.5-turbo-1106 ../test_cases/sum_images.ipynb 8\n",
      "gpt-3.5-turbo-1106 ../test_cases/sum_intensity_projection.ipynb 8\n",
      "gpt-3.5-turbo-1106 ../test_cases/tiled_image_processing.ipynb 8\n",
      "gpt-3.5-turbo-1106 ../test_cases/transpose_image_axes.ipynb 8\n",
      "gpt-3.5-turbo-1106 ../test_cases/t_test.ipynb 8\n",
      "gpt-3.5-turbo-1106 ../test_cases/workflow_batch_process_folder_count_labels.ipynb 8\n",
      "gpt-3.5-turbo-1106 ../test_cases/workflow_batch_process_folder_measure_intensity.ipynb 8\n",
      "gpt-3.5-turbo-1106 ../test_cases/workflow_segmentation_counting.ipynb 8\n",
      "gpt-3.5-turbo-1106 ../test_cases/workflow_segmentation_measurement_summary.ipynb 8\n",
      "gpt-3.5-turbo-1106 ../test_cases/workflow_segment_measure_umap.ipynb 8\n",
      "gpt-3.5-turbo-1106 ../test_cases/workflow_watershed_segmentation_correction_measurement.ipynb 8\n",
      "gpt-3.5-turbo-1106 ../test_cases/apply_otsu_threshold_and_count_postiive_pixels.ipynb 9\n",
      "gpt-3.5-turbo-1106 ../test_cases/binary_closing.ipynb 9\n",
      "gpt-3.5-turbo-1106 ../test_cases/binary_skeleton.ipynb 9\n",
      "gpt-3.5-turbo-1106 ../test_cases/bland_altman.ipynb 9\n",
      "gpt-3.5-turbo-1106 ../test_cases/combine_columns_of_tables.ipynb 9\n",
      "gpt-3.5-turbo-1106 ../test_cases/convex_hull_measure_area.ipynb 9\n",
      "gpt-3.5-turbo-1106 ../test_cases/convolve_images.ipynb 9\n",
      "gpt-3.5-turbo-1106 ../test_cases/count_number_of_touching_neighbors.ipynb 9\n",
      "gpt-3.5-turbo-1106 ../test_cases/count_objects_over_time.ipynb 9\n",
      "gpt-3.5-turbo-1106 ../test_cases/count_overlapping_regions.ipynb 9\n",
      "gpt-3.5-turbo-1106 ../test_cases/create_umap.ipynb 9\n",
      "gpt-3.5-turbo-1106 ../test_cases/crop_quarter_image.ipynb 9\n",
      "gpt-3.5-turbo-1106 ../test_cases/deconvolve_image.ipynb 9\n",
      "gpt-3.5-turbo-1106 ../test_cases/detect_edges.ipynb 9\n",
      "gpt-3.5-turbo-1106 ../test_cases/expand_labels_without_overlap.ipynb 9\n",
      "gpt-3.5-turbo-1106 ../test_cases/extract_surface_measure_area.ipynb 9\n",
      "gpt-3.5-turbo-1106 ../test_cases/fit_circle.ipynb 9\n",
      "gpt-3.5-turbo-1106 ../test_cases/label_binary_image_and_count_labels.ipynb 9\n",
      "gpt-3.5-turbo-1106 ../test_cases/label_sequentially.ipynb 9\n",
      "gpt-3.5-turbo-1106 ../test_cases/list_image_files_in_folder.ipynb 9\n",
      "gpt-3.5-turbo-1106 ../test_cases/map_pixel_count_of_labels.ipynb 9\n",
      "gpt-3.5-turbo-1106 ../test_cases/mask_image.ipynb 9\n",
      "gpt-3.5-turbo-1106 ../test_cases/maximum_intensity_projection.ipynb 9\n",
      "gpt-3.5-turbo-1106 ../test_cases/mean_squared_error.ipynb 9\n",
      "gpt-3.5-turbo-1106 ../test_cases/mean_std_column.ipynb 9\n",
      "gpt-3.5-turbo-1106 ../test_cases/measure_aspect_ratio_of_regions.ipynb 9\n",
      "gpt-3.5-turbo-1106 ../test_cases/measure_intensity_of_labels.ipynb 9\n",
      "gpt-3.5-turbo-1106 ../test_cases/measure_intensity_over_time.ipynb 9\n",
      "gpt-3.5-turbo-1106 ../test_cases/measure_mean_image_intensity.ipynb 9\n",
      "gpt-3.5-turbo-1106 ../test_cases/measure_pixel_count_of_labels.ipynb 9\n",
      "gpt-3.5-turbo-1106 ../test_cases/measure_properties_of_regions.ipynb 9\n",
      "gpt-3.5-turbo-1106 ../test_cases/open_image_read_voxel_size.ipynb 9\n",
      "gpt-3.5-turbo-1106 ../test_cases/open_image_return_dimensions.ipynb 9\n",
      "gpt-3.5-turbo-1106 ../test_cases/open_nifti_image.ipynb 9\n",
      "gpt-3.5-turbo-1106 ../test_cases/open_zarr.ipynb 9\n",
      "gpt-3.5-turbo-1106 ../test_cases/pair_wise_correlation_matrix.ipynb 9\n",
      "gpt-3.5-turbo-1106 ../test_cases/radial_intensity_profile.ipynb 9\n",
      "gpt-3.5-turbo-1106 ../test_cases/region_growing_segmentation.ipynb 9\n",
      "gpt-3.5-turbo-1106 ../test_cases/remove_labels_on_edges.ipynb 9\n",
      "gpt-3.5-turbo-1106 ../test_cases/remove_noise_edge_preserving.ipynb 9\n",
      "gpt-3.5-turbo-1106 ../test_cases/remove_small_labels.ipynb 9\n",
      "gpt-3.5-turbo-1106 ../test_cases/return_hello_world.ipynb 9\n",
      "gpt-3.5-turbo-1106 ../test_cases/rgb_to_grey_image_transform.ipynb 9\n",
      "gpt-3.5-turbo-1106 ../test_cases/rotate_image_by_90_degrees.ipynb 9\n",
      "gpt-3.5-turbo-1106 ../test_cases/subsample_image.ipynb 9\n",
      "gpt-3.5-turbo-1106 ../test_cases/subtract_background_tophat.ipynb 9\n",
      "gpt-3.5-turbo-1106 ../test_cases/sum_images.ipynb 9\n",
      "gpt-3.5-turbo-1106 ../test_cases/sum_intensity_projection.ipynb 9\n",
      "gpt-3.5-turbo-1106 ../test_cases/tiled_image_processing.ipynb 9\n",
      "gpt-3.5-turbo-1106 ../test_cases/transpose_image_axes.ipynb 9\n",
      "gpt-3.5-turbo-1106 ../test_cases/t_test.ipynb 9\n",
      "gpt-3.5-turbo-1106 ../test_cases/workflow_batch_process_folder_count_labels.ipynb 9\n",
      "gpt-3.5-turbo-1106 ../test_cases/workflow_batch_process_folder_measure_intensity.ipynb 9\n",
      "gpt-3.5-turbo-1106 ../test_cases/workflow_segmentation_counting.ipynb 9\n",
      "gpt-3.5-turbo-1106 ../test_cases/workflow_segmentation_measurement_summary.ipynb 9\n",
      "gpt-3.5-turbo-1106 ../test_cases/workflow_segment_measure_umap.ipynb 9\n",
      "gpt-3.5-turbo-1106 ../test_cases/workflow_watershed_segmentation_correction_measurement.ipynb 9\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/apply_otsu_threshold_and_count_postiive_pixels.ipynb 0\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/binary_closing.ipynb 0\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/binary_skeleton.ipynb 0\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/bland_altman.ipynb 0\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/combine_columns_of_tables.ipynb 0\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/convex_hull_measure_area.ipynb 0\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/convolve_images.ipynb 0\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/count_number_of_touching_neighbors.ipynb 0\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/count_objects_over_time.ipynb 0\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/count_overlapping_regions.ipynb 0\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/create_umap.ipynb 0\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/crop_quarter_image.ipynb 0\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/deconvolve_image.ipynb 0\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/detect_edges.ipynb 0\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/expand_labels_without_overlap.ipynb 0\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/extract_surface_measure_area.ipynb 0\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/fit_circle.ipynb 0\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/label_binary_image_and_count_labels.ipynb 0\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/label_sequentially.ipynb 0\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/list_image_files_in_folder.ipynb 0\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/map_pixel_count_of_labels.ipynb 0\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/mask_image.ipynb 0\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/maximum_intensity_projection.ipynb 0\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/mean_squared_error.ipynb 0\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/mean_std_column.ipynb 0\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/measure_aspect_ratio_of_regions.ipynb 0\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/measure_intensity_of_labels.ipynb 0\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/measure_intensity_over_time.ipynb 0\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/measure_mean_image_intensity.ipynb 0\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/measure_pixel_count_of_labels.ipynb 0\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/measure_properties_of_regions.ipynb 0\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/open_image_read_voxel_size.ipynb 0\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/open_image_return_dimensions.ipynb 0\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/open_nifti_image.ipynb 0\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/open_zarr.ipynb 0\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/pair_wise_correlation_matrix.ipynb 0\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/radial_intensity_profile.ipynb 0\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/region_growing_segmentation.ipynb 0\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/remove_labels_on_edges.ipynb 0\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/remove_noise_edge_preserving.ipynb 0\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/remove_small_labels.ipynb 0\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/return_hello_world.ipynb 0\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/rgb_to_grey_image_transform.ipynb 0\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/rotate_image_by_90_degrees.ipynb 0\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/subsample_image.ipynb 0\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/subtract_background_tophat.ipynb 0\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/sum_images.ipynb 0\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/sum_intensity_projection.ipynb 0\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/tiled_image_processing.ipynb 0\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/transpose_image_axes.ipynb 0\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/t_test.ipynb 0\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/workflow_batch_process_folder_count_labels.ipynb 0\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/workflow_batch_process_folder_measure_intensity.ipynb 0\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/workflow_segmentation_counting.ipynb 0\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/workflow_segmentation_measurement_summary.ipynb 0\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/workflow_segment_measure_umap.ipynb 0\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/workflow_watershed_segmentation_correction_measurement.ipynb 0\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/apply_otsu_threshold_and_count_postiive_pixels.ipynb 1\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/binary_closing.ipynb 1\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/binary_skeleton.ipynb 1\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/bland_altman.ipynb 1\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/combine_columns_of_tables.ipynb 1\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/convex_hull_measure_area.ipynb 1\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/convolve_images.ipynb 1\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/count_number_of_touching_neighbors.ipynb 1\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/count_objects_over_time.ipynb 1\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/count_overlapping_regions.ipynb 1\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/create_umap.ipynb 1\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/crop_quarter_image.ipynb 1\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/deconvolve_image.ipynb 1\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/detect_edges.ipynb 1\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/expand_labels_without_overlap.ipynb 1\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/extract_surface_measure_area.ipynb 1\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/fit_circle.ipynb 1\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/label_binary_image_and_count_labels.ipynb 1\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/label_sequentially.ipynb 1\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/list_image_files_in_folder.ipynb 1\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/map_pixel_count_of_labels.ipynb 1\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/mask_image.ipynb 1\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/maximum_intensity_projection.ipynb 1\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/mean_squared_error.ipynb 1\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/mean_std_column.ipynb 1\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/measure_aspect_ratio_of_regions.ipynb 1\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/measure_intensity_of_labels.ipynb 1\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/measure_intensity_over_time.ipynb 1\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/measure_mean_image_intensity.ipynb 1\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/measure_pixel_count_of_labels.ipynb 1\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/measure_properties_of_regions.ipynb 1\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/open_image_read_voxel_size.ipynb 1\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/open_image_return_dimensions.ipynb 1\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/open_nifti_image.ipynb 1\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/open_zarr.ipynb 1\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/pair_wise_correlation_matrix.ipynb 1\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/radial_intensity_profile.ipynb 1\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/region_growing_segmentation.ipynb 1\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/remove_labels_on_edges.ipynb 1\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/remove_noise_edge_preserving.ipynb 1\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/remove_small_labels.ipynb 1\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/return_hello_world.ipynb 1\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/rgb_to_grey_image_transform.ipynb 1\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/rotate_image_by_90_degrees.ipynb 1\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/subsample_image.ipynb 1\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/subtract_background_tophat.ipynb 1\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/sum_images.ipynb 1\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/sum_intensity_projection.ipynb 1\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/tiled_image_processing.ipynb 1\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/transpose_image_axes.ipynb 1\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/t_test.ipynb 1\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/workflow_batch_process_folder_count_labels.ipynb 1\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/workflow_batch_process_folder_measure_intensity.ipynb 1\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/workflow_segmentation_counting.ipynb 1\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/workflow_segmentation_measurement_summary.ipynb 1\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/workflow_segment_measure_umap.ipynb 1\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/workflow_watershed_segmentation_correction_measurement.ipynb 1\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/apply_otsu_threshold_and_count_postiive_pixels.ipynb 2\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/binary_closing.ipynb 2\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/binary_skeleton.ipynb 2\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/bland_altman.ipynb 2\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/combine_columns_of_tables.ipynb 2\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/convex_hull_measure_area.ipynb 2\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/convolve_images.ipynb 2\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/count_number_of_touching_neighbors.ipynb 2\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/count_objects_over_time.ipynb 2\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/count_overlapping_regions.ipynb 2\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/create_umap.ipynb 2\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/crop_quarter_image.ipynb 2\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/deconvolve_image.ipynb 2\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/detect_edges.ipynb 2\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/expand_labels_without_overlap.ipynb 2\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/extract_surface_measure_area.ipynb 2\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/fit_circle.ipynb 2\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/label_binary_image_and_count_labels.ipynb 2\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/label_sequentially.ipynb 2\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/list_image_files_in_folder.ipynb 2\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/map_pixel_count_of_labels.ipynb 2\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/mask_image.ipynb 2\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/maximum_intensity_projection.ipynb 2\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/mean_squared_error.ipynb 2\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/mean_std_column.ipynb 2\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/measure_aspect_ratio_of_regions.ipynb 2\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/measure_intensity_of_labels.ipynb 2\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/measure_intensity_over_time.ipynb 2\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/measure_mean_image_intensity.ipynb 2\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/measure_pixel_count_of_labels.ipynb 2\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/measure_properties_of_regions.ipynb 2\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/open_image_read_voxel_size.ipynb 2\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/open_image_return_dimensions.ipynb 2\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/open_nifti_image.ipynb 2\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/open_zarr.ipynb 2\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/pair_wise_correlation_matrix.ipynb 2\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/radial_intensity_profile.ipynb 2\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/region_growing_segmentation.ipynb 2\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/remove_labels_on_edges.ipynb 2\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/remove_noise_edge_preserving.ipynb 2\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/remove_small_labels.ipynb 2\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/return_hello_world.ipynb 2\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/rgb_to_grey_image_transform.ipynb 2\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/rotate_image_by_90_degrees.ipynb 2\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/subsample_image.ipynb 2\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/subtract_background_tophat.ipynb 2\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/sum_images.ipynb 2\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/sum_intensity_projection.ipynb 2\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/tiled_image_processing.ipynb 2\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/transpose_image_axes.ipynb 2\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/t_test.ipynb 2\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/workflow_batch_process_folder_count_labels.ipynb 2\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/workflow_batch_process_folder_measure_intensity.ipynb 2\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/workflow_segmentation_counting.ipynb 2\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/workflow_segmentation_measurement_summary.ipynb 2\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/workflow_segment_measure_umap.ipynb 2\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/workflow_watershed_segmentation_correction_measurement.ipynb 2\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/apply_otsu_threshold_and_count_postiive_pixels.ipynb 3\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/binary_closing.ipynb 3\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/binary_skeleton.ipynb 3\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/bland_altman.ipynb 3\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/combine_columns_of_tables.ipynb 3\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/convex_hull_measure_area.ipynb 3\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/convolve_images.ipynb 3\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/count_number_of_touching_neighbors.ipynb 3\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/count_objects_over_time.ipynb 3\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/count_overlapping_regions.ipynb 3\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/create_umap.ipynb 3\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/crop_quarter_image.ipynb 3\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/deconvolve_image.ipynb 3\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/detect_edges.ipynb 3\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/expand_labels_without_overlap.ipynb 3\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/extract_surface_measure_area.ipynb 3\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/fit_circle.ipynb 3\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/label_binary_image_and_count_labels.ipynb 3\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/label_sequentially.ipynb 3\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/list_image_files_in_folder.ipynb 3\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/map_pixel_count_of_labels.ipynb 3\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/mask_image.ipynb 3\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/maximum_intensity_projection.ipynb 3\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/mean_squared_error.ipynb 3\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/mean_std_column.ipynb 3\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/measure_aspect_ratio_of_regions.ipynb 3\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/measure_intensity_of_labels.ipynb 3\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/measure_intensity_over_time.ipynb 3\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/measure_mean_image_intensity.ipynb 3\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/measure_pixel_count_of_labels.ipynb 3\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/measure_properties_of_regions.ipynb 3\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/open_image_read_voxel_size.ipynb 3\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/open_image_return_dimensions.ipynb 3\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/open_nifti_image.ipynb 3\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/open_zarr.ipynb 3\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/pair_wise_correlation_matrix.ipynb 3\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/radial_intensity_profile.ipynb 3\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/region_growing_segmentation.ipynb 3\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/remove_labels_on_edges.ipynb 3\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/remove_noise_edge_preserving.ipynb 3\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/remove_small_labels.ipynb 3\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/return_hello_world.ipynb 3\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/rgb_to_grey_image_transform.ipynb 3\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/rotate_image_by_90_degrees.ipynb 3\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/subsample_image.ipynb 3\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/subtract_background_tophat.ipynb 3\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/sum_images.ipynb 3\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/sum_intensity_projection.ipynb 3\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/tiled_image_processing.ipynb 3\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/transpose_image_axes.ipynb 3\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/t_test.ipynb 3\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/workflow_batch_process_folder_count_labels.ipynb 3\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/workflow_batch_process_folder_measure_intensity.ipynb 3\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/workflow_segmentation_counting.ipynb 3\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/workflow_segmentation_measurement_summary.ipynb 3\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/workflow_segment_measure_umap.ipynb 3\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/workflow_watershed_segmentation_correction_measurement.ipynb 3\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/apply_otsu_threshold_and_count_postiive_pixels.ipynb 4\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/binary_closing.ipynb 4\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/binary_skeleton.ipynb 4\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/bland_altman.ipynb 4\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/combine_columns_of_tables.ipynb 4\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/convex_hull_measure_area.ipynb 4\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/convolve_images.ipynb 4\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/count_number_of_touching_neighbors.ipynb 4\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/count_objects_over_time.ipynb 4\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/count_overlapping_regions.ipynb 4\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/create_umap.ipynb 4\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/crop_quarter_image.ipynb 4\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/deconvolve_image.ipynb 4\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/detect_edges.ipynb 4\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/expand_labels_without_overlap.ipynb 4\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/extract_surface_measure_area.ipynb 4\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/fit_circle.ipynb 4\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/label_binary_image_and_count_labels.ipynb 4\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/label_sequentially.ipynb 4\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/list_image_files_in_folder.ipynb 4\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/map_pixel_count_of_labels.ipynb 4\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/mask_image.ipynb 4\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/maximum_intensity_projection.ipynb 4\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/mean_squared_error.ipynb 4\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/mean_std_column.ipynb 4\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/measure_aspect_ratio_of_regions.ipynb 4\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/measure_intensity_of_labels.ipynb 4\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/measure_intensity_over_time.ipynb 4\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/measure_mean_image_intensity.ipynb 4\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/measure_pixel_count_of_labels.ipynb 4\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/measure_properties_of_regions.ipynb 4\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/open_image_read_voxel_size.ipynb 4\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/open_image_return_dimensions.ipynb 4\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/open_nifti_image.ipynb 4\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/open_zarr.ipynb 4\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/pair_wise_correlation_matrix.ipynb 4\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/radial_intensity_profile.ipynb 4\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/region_growing_segmentation.ipynb 4\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/remove_labels_on_edges.ipynb 4\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/remove_noise_edge_preserving.ipynb 4\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/remove_small_labels.ipynb 4\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/return_hello_world.ipynb 4\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/rgb_to_grey_image_transform.ipynb 4\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/rotate_image_by_90_degrees.ipynb 4\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/subsample_image.ipynb 4\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/subtract_background_tophat.ipynb 4\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/sum_images.ipynb 4\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/sum_intensity_projection.ipynb 4\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/tiled_image_processing.ipynb 4\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/transpose_image_axes.ipynb 4\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/t_test.ipynb 4\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/workflow_batch_process_folder_count_labels.ipynb 4\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/workflow_batch_process_folder_measure_intensity.ipynb 4\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/workflow_segmentation_counting.ipynb 4\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/workflow_segmentation_measurement_summary.ipynb 4\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/workflow_segment_measure_umap.ipynb 4\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/workflow_watershed_segmentation_correction_measurement.ipynb 4\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/apply_otsu_threshold_and_count_postiive_pixels.ipynb 5\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/binary_closing.ipynb 5\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/binary_skeleton.ipynb 5\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/bland_altman.ipynb 5\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/combine_columns_of_tables.ipynb 5\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/convex_hull_measure_area.ipynb 5\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/convolve_images.ipynb 5\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/count_number_of_touching_neighbors.ipynb 5\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/count_objects_over_time.ipynb 5\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/count_overlapping_regions.ipynb 5\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/create_umap.ipynb 5\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/crop_quarter_image.ipynb 5\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/deconvolve_image.ipynb 5\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/detect_edges.ipynb 5\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/expand_labels_without_overlap.ipynb 5\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/extract_surface_measure_area.ipynb 5\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/fit_circle.ipynb 5\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/label_binary_image_and_count_labels.ipynb 5\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/label_sequentially.ipynb 5\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/list_image_files_in_folder.ipynb 5\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/map_pixel_count_of_labels.ipynb 5\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/mask_image.ipynb 5\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/maximum_intensity_projection.ipynb 5\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/mean_squared_error.ipynb 5\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/mean_std_column.ipynb 5\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/measure_aspect_ratio_of_regions.ipynb 5\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/measure_intensity_of_labels.ipynb 5\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/measure_intensity_over_time.ipynb 5\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/measure_mean_image_intensity.ipynb 5\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/measure_pixel_count_of_labels.ipynb 5\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/measure_properties_of_regions.ipynb 5\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/open_image_read_voxel_size.ipynb 5\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/open_image_return_dimensions.ipynb 5\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/open_nifti_image.ipynb 5\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/open_zarr.ipynb 5\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/pair_wise_correlation_matrix.ipynb 5\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/radial_intensity_profile.ipynb 5\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/region_growing_segmentation.ipynb 5\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/remove_labels_on_edges.ipynb 5\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/remove_noise_edge_preserving.ipynb 5\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/remove_small_labels.ipynb 5\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/return_hello_world.ipynb 5\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/rgb_to_grey_image_transform.ipynb 5\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/rotate_image_by_90_degrees.ipynb 5\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/subsample_image.ipynb 5\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/subtract_background_tophat.ipynb 5\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/sum_images.ipynb 5\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/sum_intensity_projection.ipynb 5\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/tiled_image_processing.ipynb 5\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/transpose_image_axes.ipynb 5\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/t_test.ipynb 5\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/workflow_batch_process_folder_count_labels.ipynb 5\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/workflow_batch_process_folder_measure_intensity.ipynb 5\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/workflow_segmentation_counting.ipynb 5\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/workflow_segmentation_measurement_summary.ipynb 5\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/workflow_segment_measure_umap.ipynb 5\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/workflow_watershed_segmentation_correction_measurement.ipynb 5\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/apply_otsu_threshold_and_count_postiive_pixels.ipynb 6\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/binary_closing.ipynb 6\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/binary_skeleton.ipynb 6\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/bland_altman.ipynb 6\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/combine_columns_of_tables.ipynb 6\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/convex_hull_measure_area.ipynb 6\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/convolve_images.ipynb 6\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/count_number_of_touching_neighbors.ipynb 6\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/count_objects_over_time.ipynb 6\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/count_overlapping_regions.ipynb 6\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/create_umap.ipynb 6\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/crop_quarter_image.ipynb 6\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/deconvolve_image.ipynb 6\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/detect_edges.ipynb 6\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/expand_labels_without_overlap.ipynb 6\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/extract_surface_measure_area.ipynb 6\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/fit_circle.ipynb 6\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/label_binary_image_and_count_labels.ipynb 6\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/label_sequentially.ipynb 6\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/list_image_files_in_folder.ipynb 6\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/map_pixel_count_of_labels.ipynb 6\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/mask_image.ipynb 6\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/maximum_intensity_projection.ipynb 6\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/mean_squared_error.ipynb 6\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/mean_std_column.ipynb 6\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/measure_aspect_ratio_of_regions.ipynb 6\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/measure_intensity_of_labels.ipynb 6\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/measure_intensity_over_time.ipynb 6\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/measure_mean_image_intensity.ipynb 6\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/measure_pixel_count_of_labels.ipynb 6\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/measure_properties_of_regions.ipynb 6\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/open_image_read_voxel_size.ipynb 6\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/open_image_return_dimensions.ipynb 6\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/open_nifti_image.ipynb 6\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/open_zarr.ipynb 6\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/pair_wise_correlation_matrix.ipynb 6\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/radial_intensity_profile.ipynb 6\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/region_growing_segmentation.ipynb 6\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/remove_labels_on_edges.ipynb 6\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/remove_noise_edge_preserving.ipynb 6\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/remove_small_labels.ipynb 6\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/return_hello_world.ipynb 6\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/rgb_to_grey_image_transform.ipynb 6\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/rotate_image_by_90_degrees.ipynb 6\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/subsample_image.ipynb 6\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/subtract_background_tophat.ipynb 6\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/sum_images.ipynb 6\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/sum_intensity_projection.ipynb 6\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/tiled_image_processing.ipynb 6\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/transpose_image_axes.ipynb 6\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/t_test.ipynb 6\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/workflow_batch_process_folder_count_labels.ipynb 6\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/workflow_batch_process_folder_measure_intensity.ipynb 6\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/workflow_segmentation_counting.ipynb 6\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/workflow_segmentation_measurement_summary.ipynb 6\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/workflow_segment_measure_umap.ipynb 6\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/workflow_watershed_segmentation_correction_measurement.ipynb 6\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/apply_otsu_threshold_and_count_postiive_pixels.ipynb 7\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/binary_closing.ipynb 7\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/binary_skeleton.ipynb 7\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/bland_altman.ipynb 7\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/combine_columns_of_tables.ipynb 7\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/convex_hull_measure_area.ipynb 7\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/convolve_images.ipynb 7\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/count_number_of_touching_neighbors.ipynb 7\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/count_objects_over_time.ipynb 7\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/count_overlapping_regions.ipynb 7\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/create_umap.ipynb 7\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/crop_quarter_image.ipynb 7\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/deconvolve_image.ipynb 7\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/detect_edges.ipynb 7\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/expand_labels_without_overlap.ipynb 7\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/extract_surface_measure_area.ipynb 7\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/fit_circle.ipynb 7\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/label_binary_image_and_count_labels.ipynb 7\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/label_sequentially.ipynb 7\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/list_image_files_in_folder.ipynb 7\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/map_pixel_count_of_labels.ipynb 7\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/mask_image.ipynb 7\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/maximum_intensity_projection.ipynb 7\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/mean_squared_error.ipynb 7\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/mean_std_column.ipynb 7\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/measure_aspect_ratio_of_regions.ipynb 7\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/measure_intensity_of_labels.ipynb 7\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/measure_intensity_over_time.ipynb 7\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/measure_mean_image_intensity.ipynb 7\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/measure_pixel_count_of_labels.ipynb 7\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/measure_properties_of_regions.ipynb 7\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/open_image_read_voxel_size.ipynb 7\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/open_image_return_dimensions.ipynb 7\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/open_nifti_image.ipynb 7\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/open_zarr.ipynb 7\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/pair_wise_correlation_matrix.ipynb 7\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/radial_intensity_profile.ipynb 7\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/region_growing_segmentation.ipynb 7\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/remove_labels_on_edges.ipynb 7\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/remove_noise_edge_preserving.ipynb 7\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/remove_small_labels.ipynb 7\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/return_hello_world.ipynb 7\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/rgb_to_grey_image_transform.ipynb 7\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/rotate_image_by_90_degrees.ipynb 7\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/subsample_image.ipynb 7\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/subtract_background_tophat.ipynb 7\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/sum_images.ipynb 7\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/sum_intensity_projection.ipynb 7\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/tiled_image_processing.ipynb 7\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/transpose_image_axes.ipynb 7\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/t_test.ipynb 7\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/workflow_batch_process_folder_count_labels.ipynb 7\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/workflow_batch_process_folder_measure_intensity.ipynb 7\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/workflow_segmentation_counting.ipynb 7\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/workflow_segmentation_measurement_summary.ipynb 7\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/workflow_segment_measure_umap.ipynb 7\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/workflow_watershed_segmentation_correction_measurement.ipynb 7\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/apply_otsu_threshold_and_count_postiive_pixels.ipynb 8\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/binary_closing.ipynb 8\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/binary_skeleton.ipynb 8\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/bland_altman.ipynb 8\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/combine_columns_of_tables.ipynb 8\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/convex_hull_measure_area.ipynb 8\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/convolve_images.ipynb 8\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/count_number_of_touching_neighbors.ipynb 8\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/count_objects_over_time.ipynb 8\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/count_overlapping_regions.ipynb 8\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/create_umap.ipynb 8\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/crop_quarter_image.ipynb 8\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/deconvolve_image.ipynb 8\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/detect_edges.ipynb 8\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/expand_labels_without_overlap.ipynb 8\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/extract_surface_measure_area.ipynb 8\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/fit_circle.ipynb 8\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/label_binary_image_and_count_labels.ipynb 8\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/label_sequentially.ipynb 8\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/list_image_files_in_folder.ipynb 8\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/map_pixel_count_of_labels.ipynb 8\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/mask_image.ipynb 8\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/maximum_intensity_projection.ipynb 8\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/mean_squared_error.ipynb 8\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/mean_std_column.ipynb 8\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/measure_aspect_ratio_of_regions.ipynb 8\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/measure_intensity_of_labels.ipynb 8\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/measure_intensity_over_time.ipynb 8\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/measure_mean_image_intensity.ipynb 8\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/measure_pixel_count_of_labels.ipynb 8\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/measure_properties_of_regions.ipynb 8\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/open_image_read_voxel_size.ipynb 8\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/open_image_return_dimensions.ipynb 8\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/open_nifti_image.ipynb 8\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/open_zarr.ipynb 8\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/pair_wise_correlation_matrix.ipynb 8\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/radial_intensity_profile.ipynb 8\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/region_growing_segmentation.ipynb 8\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/remove_labels_on_edges.ipynb 8\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/remove_noise_edge_preserving.ipynb 8\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/remove_small_labels.ipynb 8\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/return_hello_world.ipynb 8\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/rgb_to_grey_image_transform.ipynb 8\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/rotate_image_by_90_degrees.ipynb 8\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/subsample_image.ipynb 8\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/subtract_background_tophat.ipynb 8\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/sum_images.ipynb 8\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/sum_intensity_projection.ipynb 8\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/tiled_image_processing.ipynb 8\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/transpose_image_axes.ipynb 8\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/t_test.ipynb 8\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/workflow_batch_process_folder_count_labels.ipynb 8\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/workflow_batch_process_folder_measure_intensity.ipynb 8\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/workflow_segmentation_counting.ipynb 8\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/workflow_segmentation_measurement_summary.ipynb 8\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/workflow_segment_measure_umap.ipynb 8\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/workflow_watershed_segmentation_correction_measurement.ipynb 8\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/apply_otsu_threshold_and_count_postiive_pixels.ipynb 9\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/binary_closing.ipynb 9\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/binary_skeleton.ipynb 9\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/bland_altman.ipynb 9\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/combine_columns_of_tables.ipynb 9\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/convex_hull_measure_area.ipynb 9\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/convolve_images.ipynb 9\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/count_number_of_touching_neighbors.ipynb 9\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/count_objects_over_time.ipynb 9\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/count_overlapping_regions.ipynb 9\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/create_umap.ipynb 9\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/crop_quarter_image.ipynb 9\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/deconvolve_image.ipynb 9\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/detect_edges.ipynb 9\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/expand_labels_without_overlap.ipynb 9\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/extract_surface_measure_area.ipynb 9\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/fit_circle.ipynb 9\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/label_binary_image_and_count_labels.ipynb 9\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/label_sequentially.ipynb 9\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/list_image_files_in_folder.ipynb 9\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/map_pixel_count_of_labels.ipynb 9\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/mask_image.ipynb 9\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/maximum_intensity_projection.ipynb 9\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/mean_squared_error.ipynb 9\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/mean_std_column.ipynb 9\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/measure_aspect_ratio_of_regions.ipynb 9\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/measure_intensity_of_labels.ipynb 9\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/measure_intensity_over_time.ipynb 9\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/measure_mean_image_intensity.ipynb 9\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/measure_pixel_count_of_labels.ipynb 9\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/measure_properties_of_regions.ipynb 9\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/open_image_read_voxel_size.ipynb 9\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/open_image_return_dimensions.ipynb 9\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/open_nifti_image.ipynb 9\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/open_zarr.ipynb 9\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/pair_wise_correlation_matrix.ipynb 9\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/radial_intensity_profile.ipynb 9\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/region_growing_segmentation.ipynb 9\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/remove_labels_on_edges.ipynb 9\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/remove_noise_edge_preserving.ipynb 9\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/remove_small_labels.ipynb 9\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/return_hello_world.ipynb 9\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/rgb_to_grey_image_transform.ipynb 9\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/rotate_image_by_90_degrees.ipynb 9\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/subsample_image.ipynb 9\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/subtract_background_tophat.ipynb 9\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/sum_images.ipynb 9\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/sum_intensity_projection.ipynb 9\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/tiled_image_processing.ipynb 9\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/transpose_image_axes.ipynb 9\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/t_test.ipynb 9\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/workflow_batch_process_folder_count_labels.ipynb 9\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/workflow_batch_process_folder_measure_intensity.ipynb 9\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/workflow_segmentation_counting.ipynb 9\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/workflow_segmentation_measurement_summary.ipynb 9\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/workflow_segment_measure_umap.ipynb 9\n",
      "gpt-4-turbo-2024-04-09 ../test_cases/workflow_watershed_segmentation_correction_measurement.ipynb 9\n",
      "gpt-4-1106-preview ../test_cases/apply_otsu_threshold_and_count_postiive_pixels.ipynb 0\n",
      "gpt-4-1106-preview ../test_cases/binary_closing.ipynb 0\n",
      "gpt-4-1106-preview ../test_cases/binary_skeleton.ipynb 0\n",
      "gpt-4-1106-preview ../test_cases/bland_altman.ipynb 0\n",
      "gpt-4-1106-preview ../test_cases/combine_columns_of_tables.ipynb 0\n",
      "gpt-4-1106-preview ../test_cases/convex_hull_measure_area.ipynb 0\n",
      "gpt-4-1106-preview ../test_cases/convolve_images.ipynb 0\n",
      "gpt-4-1106-preview ../test_cases/count_number_of_touching_neighbors.ipynb 0\n",
      "gpt-4-1106-preview ../test_cases/count_objects_over_time.ipynb 0\n",
      "gpt-4-1106-preview ../test_cases/count_overlapping_regions.ipynb 0\n",
      "gpt-4-1106-preview ../test_cases/create_umap.ipynb 0\n",
      "gpt-4-1106-preview ../test_cases/crop_quarter_image.ipynb 0\n",
      "gpt-4-1106-preview ../test_cases/deconvolve_image.ipynb 0\n",
      "gpt-4-1106-preview ../test_cases/detect_edges.ipynb 0\n",
      "gpt-4-1106-preview ../test_cases/expand_labels_without_overlap.ipynb 0\n",
      "gpt-4-1106-preview ../test_cases/extract_surface_measure_area.ipynb 0\n",
      "gpt-4-1106-preview ../test_cases/fit_circle.ipynb 0\n",
      "gpt-4-1106-preview ../test_cases/label_binary_image_and_count_labels.ipynb 0\n",
      "gpt-4-1106-preview ../test_cases/label_sequentially.ipynb 0\n",
      "gpt-4-1106-preview ../test_cases/list_image_files_in_folder.ipynb 0\n",
      "gpt-4-1106-preview ../test_cases/map_pixel_count_of_labels.ipynb 0\n",
      "gpt-4-1106-preview ../test_cases/mask_image.ipynb 0\n",
      "gpt-4-1106-preview ../test_cases/maximum_intensity_projection.ipynb 0\n",
      "gpt-4-1106-preview ../test_cases/mean_squared_error.ipynb 0\n",
      "gpt-4-1106-preview ../test_cases/mean_std_column.ipynb 0\n",
      "gpt-4-1106-preview ../test_cases/measure_aspect_ratio_of_regions.ipynb 0\n",
      "gpt-4-1106-preview ../test_cases/measure_intensity_of_labels.ipynb 0\n",
      "gpt-4-1106-preview ../test_cases/measure_intensity_over_time.ipynb 0\n",
      "gpt-4-1106-preview ../test_cases/measure_mean_image_intensity.ipynb 0\n",
      "gpt-4-1106-preview ../test_cases/measure_pixel_count_of_labels.ipynb 0\n",
      "gpt-4-1106-preview ../test_cases/measure_properties_of_regions.ipynb 0\n",
      "gpt-4-1106-preview ../test_cases/open_image_read_voxel_size.ipynb 0\n",
      "gpt-4-1106-preview ../test_cases/open_image_return_dimensions.ipynb 0\n",
      "gpt-4-1106-preview ../test_cases/open_nifti_image.ipynb 0\n",
      "gpt-4-1106-preview ../test_cases/open_zarr.ipynb 0\n",
      "gpt-4-1106-preview ../test_cases/pair_wise_correlation_matrix.ipynb 0\n",
      "gpt-4-1106-preview ../test_cases/radial_intensity_profile.ipynb 0\n",
      "gpt-4-1106-preview ../test_cases/region_growing_segmentation.ipynb 0\n",
      "gpt-4-1106-preview ../test_cases/remove_labels_on_edges.ipynb 0\n",
      "gpt-4-1106-preview ../test_cases/remove_noise_edge_preserving.ipynb 0\n",
      "gpt-4-1106-preview ../test_cases/remove_small_labels.ipynb 0\n",
      "gpt-4-1106-preview ../test_cases/return_hello_world.ipynb 0\n",
      "gpt-4-1106-preview ../test_cases/rgb_to_grey_image_transform.ipynb 0\n",
      "gpt-4-1106-preview ../test_cases/rotate_image_by_90_degrees.ipynb 0\n",
      "gpt-4-1106-preview ../test_cases/subsample_image.ipynb 0\n",
      "gpt-4-1106-preview ../test_cases/subtract_background_tophat.ipynb 0\n",
      "gpt-4-1106-preview ../test_cases/sum_images.ipynb 0\n",
      "gpt-4-1106-preview ../test_cases/sum_intensity_projection.ipynb 0\n",
      "gpt-4-1106-preview ../test_cases/tiled_image_processing.ipynb 0\n",
      "gpt-4-1106-preview ../test_cases/transpose_image_axes.ipynb 0\n",
      "gpt-4-1106-preview ../test_cases/t_test.ipynb 0\n",
      "gpt-4-1106-preview ../test_cases/workflow_batch_process_folder_count_labels.ipynb 0\n",
      "gpt-4-1106-preview ../test_cases/workflow_batch_process_folder_measure_intensity.ipynb 0\n",
      "gpt-4-1106-preview ../test_cases/workflow_segmentation_counting.ipynb 0\n",
      "gpt-4-1106-preview ../test_cases/workflow_segmentation_measurement_summary.ipynb 0\n",
      "gpt-4-1106-preview ../test_cases/workflow_segment_measure_umap.ipynb 0\n",
      "gpt-4-1106-preview ../test_cases/workflow_watershed_segmentation_correction_measurement.ipynb 0\n",
      "gpt-4-1106-preview ../test_cases/apply_otsu_threshold_and_count_postiive_pixels.ipynb 1\n",
      "gpt-4-1106-preview ../test_cases/binary_closing.ipynb 1\n",
      "gpt-4-1106-preview ../test_cases/binary_skeleton.ipynb 1\n",
      "gpt-4-1106-preview ../test_cases/bland_altman.ipynb 1\n",
      "gpt-4-1106-preview ../test_cases/combine_columns_of_tables.ipynb 1\n",
      "gpt-4-1106-preview ../test_cases/convex_hull_measure_area.ipynb 1\n",
      "gpt-4-1106-preview ../test_cases/convolve_images.ipynb 1\n",
      "gpt-4-1106-preview ../test_cases/count_number_of_touching_neighbors.ipynb 1\n",
      "gpt-4-1106-preview ../test_cases/count_objects_over_time.ipynb 1\n",
      "gpt-4-1106-preview ../test_cases/count_overlapping_regions.ipynb 1\n",
      "gpt-4-1106-preview ../test_cases/create_umap.ipynb 1\n",
      "gpt-4-1106-preview ../test_cases/crop_quarter_image.ipynb 1\n",
      "gpt-4-1106-preview ../test_cases/deconvolve_image.ipynb 1\n",
      "gpt-4-1106-preview ../test_cases/detect_edges.ipynb 1\n",
      "gpt-4-1106-preview ../test_cases/expand_labels_without_overlap.ipynb 1\n",
      "gpt-4-1106-preview ../test_cases/extract_surface_measure_area.ipynb 1\n",
      "gpt-4-1106-preview ../test_cases/fit_circle.ipynb 1\n",
      "gpt-4-1106-preview ../test_cases/label_binary_image_and_count_labels.ipynb 1\n",
      "gpt-4-1106-preview ../test_cases/label_sequentially.ipynb 1\n",
      "gpt-4-1106-preview ../test_cases/list_image_files_in_folder.ipynb 1\n",
      "gpt-4-1106-preview ../test_cases/map_pixel_count_of_labels.ipynb 1\n",
      "gpt-4-1106-preview ../test_cases/mask_image.ipynb 1\n",
      "gpt-4-1106-preview ../test_cases/maximum_intensity_projection.ipynb 1\n",
      "gpt-4-1106-preview ../test_cases/mean_squared_error.ipynb 1\n",
      "gpt-4-1106-preview ../test_cases/mean_std_column.ipynb 1\n",
      "gpt-4-1106-preview ../test_cases/measure_aspect_ratio_of_regions.ipynb 1\n",
      "gpt-4-1106-preview ../test_cases/measure_intensity_of_labels.ipynb 1\n",
      "gpt-4-1106-preview ../test_cases/measure_intensity_over_time.ipynb 1\n",
      "gpt-4-1106-preview ../test_cases/measure_mean_image_intensity.ipynb 1\n",
      "gpt-4-1106-preview ../test_cases/measure_pixel_count_of_labels.ipynb 1\n",
      "gpt-4-1106-preview ../test_cases/measure_properties_of_regions.ipynb 1\n",
      "gpt-4-1106-preview ../test_cases/open_image_read_voxel_size.ipynb 1\n",
      "gpt-4-1106-preview ../test_cases/open_image_return_dimensions.ipynb 1\n",
      "gpt-4-1106-preview ../test_cases/open_nifti_image.ipynb 1\n",
      "gpt-4-1106-preview ../test_cases/open_zarr.ipynb 1\n",
      "gpt-4-1106-preview ../test_cases/pair_wise_correlation_matrix.ipynb 1\n",
      "gpt-4-1106-preview ../test_cases/radial_intensity_profile.ipynb 1\n",
      "gpt-4-1106-preview ../test_cases/region_growing_segmentation.ipynb 1\n",
      "gpt-4-1106-preview ../test_cases/remove_labels_on_edges.ipynb 1\n",
      "gpt-4-1106-preview ../test_cases/remove_noise_edge_preserving.ipynb 1\n",
      "gpt-4-1106-preview ../test_cases/remove_small_labels.ipynb 1\n",
      "gpt-4-1106-preview ../test_cases/return_hello_world.ipynb 1\n",
      "gpt-4-1106-preview ../test_cases/rgb_to_grey_image_transform.ipynb 1\n",
      "gpt-4-1106-preview ../test_cases/rotate_image_by_90_degrees.ipynb 1\n",
      "gpt-4-1106-preview ../test_cases/subsample_image.ipynb 1\n",
      "gpt-4-1106-preview ../test_cases/subtract_background_tophat.ipynb 1\n",
      "gpt-4-1106-preview ../test_cases/sum_images.ipynb 1\n",
      "gpt-4-1106-preview ../test_cases/sum_intensity_projection.ipynb 1\n",
      "gpt-4-1106-preview ../test_cases/tiled_image_processing.ipynb 1\n",
      "gpt-4-1106-preview ../test_cases/transpose_image_axes.ipynb 1\n",
      "gpt-4-1106-preview ../test_cases/t_test.ipynb 1\n",
      "gpt-4-1106-preview ../test_cases/workflow_batch_process_folder_count_labels.ipynb 1\n",
      "gpt-4-1106-preview ../test_cases/workflow_batch_process_folder_measure_intensity.ipynb 1\n",
      "gpt-4-1106-preview ../test_cases/workflow_segmentation_counting.ipynb 1\n",
      "gpt-4-1106-preview ../test_cases/workflow_segmentation_measurement_summary.ipynb 1\n",
      "gpt-4-1106-preview ../test_cases/workflow_segment_measure_umap.ipynb 1\n",
      "gpt-4-1106-preview ../test_cases/workflow_watershed_segmentation_correction_measurement.ipynb 1\n",
      "gpt-4-1106-preview ../test_cases/apply_otsu_threshold_and_count_postiive_pixels.ipynb 2\n",
      "gpt-4-1106-preview ../test_cases/binary_closing.ipynb 2\n",
      "gpt-4-1106-preview ../test_cases/binary_skeleton.ipynb 2\n",
      "gpt-4-1106-preview ../test_cases/bland_altman.ipynb 2\n",
      "gpt-4-1106-preview ../test_cases/combine_columns_of_tables.ipynb 2\n",
      "gpt-4-1106-preview ../test_cases/convex_hull_measure_area.ipynb 2\n",
      "gpt-4-1106-preview ../test_cases/convolve_images.ipynb 2\n",
      "gpt-4-1106-preview ../test_cases/count_number_of_touching_neighbors.ipynb 2\n",
      "gpt-4-1106-preview ../test_cases/count_objects_over_time.ipynb 2\n",
      "gpt-4-1106-preview ../test_cases/count_overlapping_regions.ipynb 2\n",
      "gpt-4-1106-preview ../test_cases/create_umap.ipynb 2\n",
      "gpt-4-1106-preview ../test_cases/crop_quarter_image.ipynb 2\n",
      "gpt-4-1106-preview ../test_cases/deconvolve_image.ipynb 2\n",
      "gpt-4-1106-preview ../test_cases/detect_edges.ipynb 2\n",
      "gpt-4-1106-preview ../test_cases/expand_labels_without_overlap.ipynb 2\n",
      "gpt-4-1106-preview ../test_cases/extract_surface_measure_area.ipynb 2\n",
      "gpt-4-1106-preview ../test_cases/fit_circle.ipynb 2\n",
      "gpt-4-1106-preview ../test_cases/label_binary_image_and_count_labels.ipynb 2\n",
      "gpt-4-1106-preview ../test_cases/label_sequentially.ipynb 2\n",
      "gpt-4-1106-preview ../test_cases/list_image_files_in_folder.ipynb 2\n",
      "gpt-4-1106-preview ../test_cases/map_pixel_count_of_labels.ipynb 2\n",
      "gpt-4-1106-preview ../test_cases/mask_image.ipynb 2\n",
      "gpt-4-1106-preview ../test_cases/maximum_intensity_projection.ipynb 2\n",
      "gpt-4-1106-preview ../test_cases/mean_squared_error.ipynb 2\n",
      "gpt-4-1106-preview ../test_cases/mean_std_column.ipynb 2\n",
      "gpt-4-1106-preview ../test_cases/measure_aspect_ratio_of_regions.ipynb 2\n",
      "gpt-4-1106-preview ../test_cases/measure_intensity_of_labels.ipynb 2\n",
      "gpt-4-1106-preview ../test_cases/measure_intensity_over_time.ipynb 2\n",
      "gpt-4-1106-preview ../test_cases/measure_mean_image_intensity.ipynb 2\n",
      "gpt-4-1106-preview ../test_cases/measure_pixel_count_of_labels.ipynb 2\n",
      "gpt-4-1106-preview ../test_cases/measure_properties_of_regions.ipynb 2\n",
      "gpt-4-1106-preview ../test_cases/open_image_read_voxel_size.ipynb 2\n",
      "gpt-4-1106-preview ../test_cases/open_image_return_dimensions.ipynb 2\n",
      "gpt-4-1106-preview ../test_cases/open_nifti_image.ipynb 2\n",
      "gpt-4-1106-preview ../test_cases/open_zarr.ipynb 2\n",
      "gpt-4-1106-preview ../test_cases/pair_wise_correlation_matrix.ipynb 2\n",
      "gpt-4-1106-preview ../test_cases/radial_intensity_profile.ipynb 2\n",
      "gpt-4-1106-preview ../test_cases/region_growing_segmentation.ipynb 2\n",
      "gpt-4-1106-preview ../test_cases/remove_labels_on_edges.ipynb 2\n",
      "gpt-4-1106-preview ../test_cases/remove_noise_edge_preserving.ipynb 2\n",
      "gpt-4-1106-preview ../test_cases/remove_small_labels.ipynb 2\n",
      "gpt-4-1106-preview ../test_cases/return_hello_world.ipynb 2\n",
      "gpt-4-1106-preview ../test_cases/rgb_to_grey_image_transform.ipynb 2\n",
      "gpt-4-1106-preview ../test_cases/rotate_image_by_90_degrees.ipynb 2\n",
      "gpt-4-1106-preview ../test_cases/subsample_image.ipynb 2\n",
      "gpt-4-1106-preview ../test_cases/subtract_background_tophat.ipynb 2\n",
      "gpt-4-1106-preview ../test_cases/sum_images.ipynb 2\n",
      "gpt-4-1106-preview ../test_cases/sum_intensity_projection.ipynb 2\n",
      "gpt-4-1106-preview ../test_cases/tiled_image_processing.ipynb 2\n",
      "gpt-4-1106-preview ../test_cases/transpose_image_axes.ipynb 2\n",
      "gpt-4-1106-preview ../test_cases/t_test.ipynb 2\n",
      "gpt-4-1106-preview ../test_cases/workflow_batch_process_folder_count_labels.ipynb 2\n",
      "gpt-4-1106-preview ../test_cases/workflow_batch_process_folder_measure_intensity.ipynb 2\n",
      "gpt-4-1106-preview ../test_cases/workflow_segmentation_counting.ipynb 2\n",
      "gpt-4-1106-preview ../test_cases/workflow_segmentation_measurement_summary.ipynb 2\n",
      "gpt-4-1106-preview ../test_cases/workflow_segment_measure_umap.ipynb 2\n",
      "gpt-4-1106-preview ../test_cases/workflow_watershed_segmentation_correction_measurement.ipynb 2\n",
      "gpt-4-1106-preview ../test_cases/apply_otsu_threshold_and_count_postiive_pixels.ipynb 3\n",
      "gpt-4-1106-preview ../test_cases/binary_closing.ipynb 3\n",
      "gpt-4-1106-preview ../test_cases/binary_skeleton.ipynb 3\n",
      "gpt-4-1106-preview ../test_cases/bland_altman.ipynb 3\n",
      "gpt-4-1106-preview ../test_cases/combine_columns_of_tables.ipynb 3\n",
      "gpt-4-1106-preview ../test_cases/convex_hull_measure_area.ipynb 3\n",
      "gpt-4-1106-preview ../test_cases/convolve_images.ipynb 3\n",
      "gpt-4-1106-preview ../test_cases/count_number_of_touching_neighbors.ipynb 3\n",
      "gpt-4-1106-preview ../test_cases/count_objects_over_time.ipynb 3\n",
      "gpt-4-1106-preview ../test_cases/count_overlapping_regions.ipynb 3\n",
      "gpt-4-1106-preview ../test_cases/create_umap.ipynb 3\n",
      "gpt-4-1106-preview ../test_cases/crop_quarter_image.ipynb 3\n",
      "gpt-4-1106-preview ../test_cases/deconvolve_image.ipynb 3\n",
      "gpt-4-1106-preview ../test_cases/detect_edges.ipynb 3\n",
      "gpt-4-1106-preview ../test_cases/expand_labels_without_overlap.ipynb 3\n",
      "gpt-4-1106-preview ../test_cases/extract_surface_measure_area.ipynb 3\n",
      "gpt-4-1106-preview ../test_cases/fit_circle.ipynb 3\n",
      "gpt-4-1106-preview ../test_cases/label_binary_image_and_count_labels.ipynb 3\n",
      "gpt-4-1106-preview ../test_cases/label_sequentially.ipynb 3\n",
      "gpt-4-1106-preview ../test_cases/list_image_files_in_folder.ipynb 3\n",
      "gpt-4-1106-preview ../test_cases/map_pixel_count_of_labels.ipynb 3\n",
      "gpt-4-1106-preview ../test_cases/mask_image.ipynb 3\n",
      "gpt-4-1106-preview ../test_cases/maximum_intensity_projection.ipynb 3\n",
      "gpt-4-1106-preview ../test_cases/mean_squared_error.ipynb 3\n",
      "gpt-4-1106-preview ../test_cases/mean_std_column.ipynb 3\n",
      "gpt-4-1106-preview ../test_cases/measure_aspect_ratio_of_regions.ipynb 3\n",
      "gpt-4-1106-preview ../test_cases/measure_intensity_of_labels.ipynb 3\n",
      "gpt-4-1106-preview ../test_cases/measure_intensity_over_time.ipynb 3\n",
      "gpt-4-1106-preview ../test_cases/measure_mean_image_intensity.ipynb 3\n",
      "gpt-4-1106-preview ../test_cases/measure_pixel_count_of_labels.ipynb 3\n",
      "gpt-4-1106-preview ../test_cases/measure_properties_of_regions.ipynb 3\n",
      "gpt-4-1106-preview ../test_cases/open_image_read_voxel_size.ipynb 3\n",
      "gpt-4-1106-preview ../test_cases/open_image_return_dimensions.ipynb 3\n",
      "gpt-4-1106-preview ../test_cases/open_nifti_image.ipynb 3\n",
      "gpt-4-1106-preview ../test_cases/open_zarr.ipynb 3\n",
      "gpt-4-1106-preview ../test_cases/pair_wise_correlation_matrix.ipynb 3\n",
      "gpt-4-1106-preview ../test_cases/radial_intensity_profile.ipynb 3\n",
      "gpt-4-1106-preview ../test_cases/region_growing_segmentation.ipynb 3\n",
      "gpt-4-1106-preview ../test_cases/remove_labels_on_edges.ipynb 3\n",
      "gpt-4-1106-preview ../test_cases/remove_noise_edge_preserving.ipynb 3\n",
      "gpt-4-1106-preview ../test_cases/remove_small_labels.ipynb 3\n",
      "gpt-4-1106-preview ../test_cases/return_hello_world.ipynb 3\n",
      "gpt-4-1106-preview ../test_cases/rgb_to_grey_image_transform.ipynb 3\n",
      "gpt-4-1106-preview ../test_cases/rotate_image_by_90_degrees.ipynb 3\n",
      "gpt-4-1106-preview ../test_cases/subsample_image.ipynb 3\n",
      "gpt-4-1106-preview ../test_cases/subtract_background_tophat.ipynb 3\n",
      "gpt-4-1106-preview ../test_cases/sum_images.ipynb 3\n",
      "gpt-4-1106-preview ../test_cases/sum_intensity_projection.ipynb 3\n",
      "gpt-4-1106-preview ../test_cases/tiled_image_processing.ipynb 3\n",
      "gpt-4-1106-preview ../test_cases/transpose_image_axes.ipynb 3\n",
      "gpt-4-1106-preview ../test_cases/t_test.ipynb 3\n",
      "gpt-4-1106-preview ../test_cases/workflow_batch_process_folder_count_labels.ipynb 3\n",
      "gpt-4-1106-preview ../test_cases/workflow_batch_process_folder_measure_intensity.ipynb 3\n",
      "gpt-4-1106-preview ../test_cases/workflow_segmentation_counting.ipynb 3\n",
      "gpt-4-1106-preview ../test_cases/workflow_segmentation_measurement_summary.ipynb 3\n",
      "gpt-4-1106-preview ../test_cases/workflow_segment_measure_umap.ipynb 3\n",
      "gpt-4-1106-preview ../test_cases/workflow_watershed_segmentation_correction_measurement.ipynb 3\n",
      "gpt-4-1106-preview ../test_cases/apply_otsu_threshold_and_count_postiive_pixels.ipynb 4\n",
      "gpt-4-1106-preview ../test_cases/binary_closing.ipynb 4\n",
      "gpt-4-1106-preview ../test_cases/binary_skeleton.ipynb 4\n",
      "gpt-4-1106-preview ../test_cases/bland_altman.ipynb 4\n",
      "gpt-4-1106-preview ../test_cases/combine_columns_of_tables.ipynb 4\n",
      "gpt-4-1106-preview ../test_cases/convex_hull_measure_area.ipynb 4\n",
      "gpt-4-1106-preview ../test_cases/convolve_images.ipynb 4\n",
      "gpt-4-1106-preview ../test_cases/count_number_of_touching_neighbors.ipynb 4\n",
      "gpt-4-1106-preview ../test_cases/count_objects_over_time.ipynb 4\n",
      "gpt-4-1106-preview ../test_cases/count_overlapping_regions.ipynb 4\n",
      "gpt-4-1106-preview ../test_cases/create_umap.ipynb 4\n",
      "gpt-4-1106-preview ../test_cases/crop_quarter_image.ipynb 4\n",
      "gpt-4-1106-preview ../test_cases/deconvolve_image.ipynb 4\n",
      "gpt-4-1106-preview ../test_cases/detect_edges.ipynb 4\n",
      "gpt-4-1106-preview ../test_cases/expand_labels_without_overlap.ipynb 4\n",
      "gpt-4-1106-preview ../test_cases/extract_surface_measure_area.ipynb 4\n",
      "gpt-4-1106-preview ../test_cases/fit_circle.ipynb 4\n",
      "gpt-4-1106-preview ../test_cases/label_binary_image_and_count_labels.ipynb 4\n",
      "gpt-4-1106-preview ../test_cases/label_sequentially.ipynb 4\n",
      "gpt-4-1106-preview ../test_cases/list_image_files_in_folder.ipynb 4\n",
      "gpt-4-1106-preview ../test_cases/map_pixel_count_of_labels.ipynb 4\n",
      "gpt-4-1106-preview ../test_cases/mask_image.ipynb 4\n",
      "gpt-4-1106-preview ../test_cases/maximum_intensity_projection.ipynb 4\n",
      "gpt-4-1106-preview ../test_cases/mean_squared_error.ipynb 4\n",
      "gpt-4-1106-preview ../test_cases/mean_std_column.ipynb 4\n",
      "gpt-4-1106-preview ../test_cases/measure_aspect_ratio_of_regions.ipynb 4\n",
      "gpt-4-1106-preview ../test_cases/measure_intensity_of_labels.ipynb 4\n",
      "gpt-4-1106-preview ../test_cases/measure_intensity_over_time.ipynb 4\n",
      "gpt-4-1106-preview ../test_cases/measure_mean_image_intensity.ipynb 4\n",
      "gpt-4-1106-preview ../test_cases/measure_pixel_count_of_labels.ipynb 4\n",
      "gpt-4-1106-preview ../test_cases/measure_properties_of_regions.ipynb 4\n",
      "gpt-4-1106-preview ../test_cases/open_image_read_voxel_size.ipynb 4\n",
      "gpt-4-1106-preview ../test_cases/open_image_return_dimensions.ipynb 4\n",
      "gpt-4-1106-preview ../test_cases/open_nifti_image.ipynb 4\n",
      "gpt-4-1106-preview ../test_cases/open_zarr.ipynb 4\n",
      "gpt-4-1106-preview ../test_cases/pair_wise_correlation_matrix.ipynb 4\n",
      "gpt-4-1106-preview ../test_cases/radial_intensity_profile.ipynb 4\n",
      "gpt-4-1106-preview ../test_cases/region_growing_segmentation.ipynb 4\n",
      "gpt-4-1106-preview ../test_cases/remove_labels_on_edges.ipynb 4\n",
      "gpt-4-1106-preview ../test_cases/remove_noise_edge_preserving.ipynb 4\n",
      "gpt-4-1106-preview ../test_cases/remove_small_labels.ipynb 4\n",
      "gpt-4-1106-preview ../test_cases/return_hello_world.ipynb 4\n",
      "gpt-4-1106-preview ../test_cases/rgb_to_grey_image_transform.ipynb 4\n",
      "gpt-4-1106-preview ../test_cases/rotate_image_by_90_degrees.ipynb 4\n",
      "gpt-4-1106-preview ../test_cases/subsample_image.ipynb 4\n",
      "gpt-4-1106-preview ../test_cases/subtract_background_tophat.ipynb 4\n",
      "gpt-4-1106-preview ../test_cases/sum_images.ipynb 4\n",
      "gpt-4-1106-preview ../test_cases/sum_intensity_projection.ipynb 4\n",
      "gpt-4-1106-preview ../test_cases/tiled_image_processing.ipynb 4\n",
      "gpt-4-1106-preview ../test_cases/transpose_image_axes.ipynb 4\n",
      "gpt-4-1106-preview ../test_cases/t_test.ipynb 4\n",
      "gpt-4-1106-preview ../test_cases/workflow_batch_process_folder_count_labels.ipynb 4\n",
      "gpt-4-1106-preview ../test_cases/workflow_batch_process_folder_measure_intensity.ipynb 4\n",
      "gpt-4-1106-preview ../test_cases/workflow_segmentation_counting.ipynb 4\n",
      "gpt-4-1106-preview ../test_cases/workflow_segmentation_measurement_summary.ipynb 4\n",
      "gpt-4-1106-preview ../test_cases/workflow_segment_measure_umap.ipynb 4\n",
      "gpt-4-1106-preview ../test_cases/workflow_watershed_segmentation_correction_measurement.ipynb 4\n",
      "gpt-4-1106-preview ../test_cases/apply_otsu_threshold_and_count_postiive_pixels.ipynb 5\n",
      "gpt-4-1106-preview ../test_cases/binary_closing.ipynb 5\n",
      "gpt-4-1106-preview ../test_cases/binary_skeleton.ipynb 5\n",
      "gpt-4-1106-preview ../test_cases/bland_altman.ipynb 5\n",
      "gpt-4-1106-preview ../test_cases/combine_columns_of_tables.ipynb 5\n",
      "gpt-4-1106-preview ../test_cases/convex_hull_measure_area.ipynb 5\n",
      "gpt-4-1106-preview ../test_cases/convolve_images.ipynb 5\n",
      "gpt-4-1106-preview ../test_cases/count_number_of_touching_neighbors.ipynb 5\n",
      "gpt-4-1106-preview ../test_cases/count_objects_over_time.ipynb 5\n",
      "gpt-4-1106-preview ../test_cases/count_overlapping_regions.ipynb 5\n",
      "gpt-4-1106-preview ../test_cases/create_umap.ipynb 5\n",
      "gpt-4-1106-preview ../test_cases/crop_quarter_image.ipynb 5\n",
      "gpt-4-1106-preview ../test_cases/deconvolve_image.ipynb 5\n",
      "gpt-4-1106-preview ../test_cases/detect_edges.ipynb 5\n",
      "gpt-4-1106-preview ../test_cases/expand_labels_without_overlap.ipynb 5\n",
      "gpt-4-1106-preview ../test_cases/extract_surface_measure_area.ipynb 5\n",
      "gpt-4-1106-preview ../test_cases/fit_circle.ipynb 5\n",
      "gpt-4-1106-preview ../test_cases/label_binary_image_and_count_labels.ipynb 5\n",
      "gpt-4-1106-preview ../test_cases/label_sequentially.ipynb 5\n",
      "gpt-4-1106-preview ../test_cases/list_image_files_in_folder.ipynb 5\n",
      "gpt-4-1106-preview ../test_cases/map_pixel_count_of_labels.ipynb 5\n",
      "gpt-4-1106-preview ../test_cases/mask_image.ipynb 5\n",
      "gpt-4-1106-preview ../test_cases/maximum_intensity_projection.ipynb 5\n",
      "gpt-4-1106-preview ../test_cases/mean_squared_error.ipynb 5\n",
      "gpt-4-1106-preview ../test_cases/mean_std_column.ipynb 5\n",
      "gpt-4-1106-preview ../test_cases/measure_aspect_ratio_of_regions.ipynb 5\n",
      "gpt-4-1106-preview ../test_cases/measure_intensity_of_labels.ipynb 5\n",
      "gpt-4-1106-preview ../test_cases/measure_intensity_over_time.ipynb 5\n",
      "gpt-4-1106-preview ../test_cases/measure_mean_image_intensity.ipynb 5\n",
      "gpt-4-1106-preview ../test_cases/measure_pixel_count_of_labels.ipynb 5\n",
      "gpt-4-1106-preview ../test_cases/measure_properties_of_regions.ipynb 5\n",
      "gpt-4-1106-preview ../test_cases/open_image_read_voxel_size.ipynb 5\n",
      "gpt-4-1106-preview ../test_cases/open_image_return_dimensions.ipynb 5\n",
      "gpt-4-1106-preview ../test_cases/open_nifti_image.ipynb 5\n",
      "gpt-4-1106-preview ../test_cases/open_zarr.ipynb 5\n",
      "gpt-4-1106-preview ../test_cases/pair_wise_correlation_matrix.ipynb 5\n",
      "gpt-4-1106-preview ../test_cases/radial_intensity_profile.ipynb 5\n",
      "gpt-4-1106-preview ../test_cases/region_growing_segmentation.ipynb 5\n",
      "gpt-4-1106-preview ../test_cases/remove_labels_on_edges.ipynb 5\n",
      "gpt-4-1106-preview ../test_cases/remove_noise_edge_preserving.ipynb 5\n",
      "gpt-4-1106-preview ../test_cases/remove_small_labels.ipynb 5\n",
      "gpt-4-1106-preview ../test_cases/return_hello_world.ipynb 5\n",
      "gpt-4-1106-preview ../test_cases/rgb_to_grey_image_transform.ipynb 5\n",
      "gpt-4-1106-preview ../test_cases/rotate_image_by_90_degrees.ipynb 5\n",
      "gpt-4-1106-preview ../test_cases/subsample_image.ipynb 5\n",
      "gpt-4-1106-preview ../test_cases/subtract_background_tophat.ipynb 5\n",
      "gpt-4-1106-preview ../test_cases/sum_images.ipynb 5\n",
      "gpt-4-1106-preview ../test_cases/sum_intensity_projection.ipynb 5\n",
      "gpt-4-1106-preview ../test_cases/tiled_image_processing.ipynb 5\n",
      "gpt-4-1106-preview ../test_cases/transpose_image_axes.ipynb 5\n",
      "gpt-4-1106-preview ../test_cases/t_test.ipynb 5\n",
      "gpt-4-1106-preview ../test_cases/workflow_batch_process_folder_count_labels.ipynb 5\n",
      "gpt-4-1106-preview ../test_cases/workflow_batch_process_folder_measure_intensity.ipynb 5\n",
      "gpt-4-1106-preview ../test_cases/workflow_segmentation_counting.ipynb 5\n",
      "gpt-4-1106-preview ../test_cases/workflow_segmentation_measurement_summary.ipynb 5\n",
      "gpt-4-1106-preview ../test_cases/workflow_segment_measure_umap.ipynb 5\n",
      "gpt-4-1106-preview ../test_cases/workflow_watershed_segmentation_correction_measurement.ipynb 5\n",
      "gpt-4-1106-preview ../test_cases/apply_otsu_threshold_and_count_postiive_pixels.ipynb 6\n",
      "gpt-4-1106-preview ../test_cases/binary_closing.ipynb 6\n",
      "gpt-4-1106-preview ../test_cases/binary_skeleton.ipynb 6\n",
      "gpt-4-1106-preview ../test_cases/bland_altman.ipynb 6\n",
      "gpt-4-1106-preview ../test_cases/combine_columns_of_tables.ipynb 6\n",
      "gpt-4-1106-preview ../test_cases/convex_hull_measure_area.ipynb 6\n",
      "gpt-4-1106-preview ../test_cases/convolve_images.ipynb 6\n",
      "gpt-4-1106-preview ../test_cases/count_number_of_touching_neighbors.ipynb 6\n",
      "gpt-4-1106-preview ../test_cases/count_objects_over_time.ipynb 6\n",
      "gpt-4-1106-preview ../test_cases/count_overlapping_regions.ipynb 6\n",
      "gpt-4-1106-preview ../test_cases/create_umap.ipynb 6\n",
      "gpt-4-1106-preview ../test_cases/crop_quarter_image.ipynb 6\n",
      "gpt-4-1106-preview ../test_cases/deconvolve_image.ipynb 6\n",
      "gpt-4-1106-preview ../test_cases/detect_edges.ipynb 6\n",
      "gpt-4-1106-preview ../test_cases/expand_labels_without_overlap.ipynb 6\n",
      "gpt-4-1106-preview ../test_cases/extract_surface_measure_area.ipynb 6\n",
      "gpt-4-1106-preview ../test_cases/fit_circle.ipynb 6\n",
      "gpt-4-1106-preview ../test_cases/label_binary_image_and_count_labels.ipynb 6\n",
      "gpt-4-1106-preview ../test_cases/label_sequentially.ipynb 6\n",
      "gpt-4-1106-preview ../test_cases/list_image_files_in_folder.ipynb 6\n",
      "gpt-4-1106-preview ../test_cases/map_pixel_count_of_labels.ipynb 6\n",
      "gpt-4-1106-preview ../test_cases/mask_image.ipynb 6\n",
      "gpt-4-1106-preview ../test_cases/maximum_intensity_projection.ipynb 6\n",
      "gpt-4-1106-preview ../test_cases/mean_squared_error.ipynb 6\n",
      "gpt-4-1106-preview ../test_cases/mean_std_column.ipynb 6\n",
      "gpt-4-1106-preview ../test_cases/measure_aspect_ratio_of_regions.ipynb 6\n",
      "gpt-4-1106-preview ../test_cases/measure_intensity_of_labels.ipynb 6\n",
      "gpt-4-1106-preview ../test_cases/measure_intensity_over_time.ipynb 6\n",
      "gpt-4-1106-preview ../test_cases/measure_mean_image_intensity.ipynb 6\n",
      "gpt-4-1106-preview ../test_cases/measure_pixel_count_of_labels.ipynb 6\n",
      "gpt-4-1106-preview ../test_cases/measure_properties_of_regions.ipynb 6\n",
      "gpt-4-1106-preview ../test_cases/open_image_read_voxel_size.ipynb 6\n",
      "gpt-4-1106-preview ../test_cases/open_image_return_dimensions.ipynb 6\n",
      "gpt-4-1106-preview ../test_cases/open_nifti_image.ipynb 6\n",
      "gpt-4-1106-preview ../test_cases/open_zarr.ipynb 6\n",
      "gpt-4-1106-preview ../test_cases/pair_wise_correlation_matrix.ipynb 6\n",
      "gpt-4-1106-preview ../test_cases/radial_intensity_profile.ipynb 6\n",
      "gpt-4-1106-preview ../test_cases/region_growing_segmentation.ipynb 6\n",
      "gpt-4-1106-preview ../test_cases/remove_labels_on_edges.ipynb 6\n",
      "gpt-4-1106-preview ../test_cases/remove_noise_edge_preserving.ipynb 6\n",
      "gpt-4-1106-preview ../test_cases/remove_small_labels.ipynb 6\n",
      "gpt-4-1106-preview ../test_cases/return_hello_world.ipynb 6\n",
      "gpt-4-1106-preview ../test_cases/rgb_to_grey_image_transform.ipynb 6\n",
      "gpt-4-1106-preview ../test_cases/rotate_image_by_90_degrees.ipynb 6\n",
      "gpt-4-1106-preview ../test_cases/subsample_image.ipynb 6\n",
      "gpt-4-1106-preview ../test_cases/subtract_background_tophat.ipynb 6\n",
      "gpt-4-1106-preview ../test_cases/sum_images.ipynb 6\n",
      "gpt-4-1106-preview ../test_cases/sum_intensity_projection.ipynb 6\n",
      "gpt-4-1106-preview ../test_cases/tiled_image_processing.ipynb 6\n",
      "gpt-4-1106-preview ../test_cases/transpose_image_axes.ipynb 6\n",
      "gpt-4-1106-preview ../test_cases/t_test.ipynb 6\n",
      "gpt-4-1106-preview ../test_cases/workflow_batch_process_folder_count_labels.ipynb 6\n",
      "gpt-4-1106-preview ../test_cases/workflow_batch_process_folder_measure_intensity.ipynb 6\n",
      "gpt-4-1106-preview ../test_cases/workflow_segmentation_counting.ipynb 6\n",
      "gpt-4-1106-preview ../test_cases/workflow_segmentation_measurement_summary.ipynb 6\n",
      "gpt-4-1106-preview ../test_cases/workflow_segment_measure_umap.ipynb 6\n",
      "gpt-4-1106-preview ../test_cases/workflow_watershed_segmentation_correction_measurement.ipynb 6\n",
      "gpt-4-1106-preview ../test_cases/apply_otsu_threshold_and_count_postiive_pixels.ipynb 7\n",
      "gpt-4-1106-preview ../test_cases/binary_closing.ipynb 7\n",
      "gpt-4-1106-preview ../test_cases/binary_skeleton.ipynb 7\n",
      "gpt-4-1106-preview ../test_cases/bland_altman.ipynb 7\n",
      "gpt-4-1106-preview ../test_cases/combine_columns_of_tables.ipynb 7\n",
      "gpt-4-1106-preview ../test_cases/convex_hull_measure_area.ipynb 7\n",
      "gpt-4-1106-preview ../test_cases/convolve_images.ipynb 7\n",
      "gpt-4-1106-preview ../test_cases/count_number_of_touching_neighbors.ipynb 7\n",
      "gpt-4-1106-preview ../test_cases/count_objects_over_time.ipynb 7\n",
      "gpt-4-1106-preview ../test_cases/count_overlapping_regions.ipynb 7\n",
      "gpt-4-1106-preview ../test_cases/create_umap.ipynb 7\n",
      "gpt-4-1106-preview ../test_cases/crop_quarter_image.ipynb 7\n",
      "gpt-4-1106-preview ../test_cases/deconvolve_image.ipynb 7\n",
      "gpt-4-1106-preview ../test_cases/detect_edges.ipynb 7\n",
      "gpt-4-1106-preview ../test_cases/expand_labels_without_overlap.ipynb 7\n",
      "gpt-4-1106-preview ../test_cases/extract_surface_measure_area.ipynb 7\n",
      "gpt-4-1106-preview ../test_cases/fit_circle.ipynb 7\n",
      "gpt-4-1106-preview ../test_cases/label_binary_image_and_count_labels.ipynb 7\n",
      "gpt-4-1106-preview ../test_cases/label_sequentially.ipynb 7\n",
      "gpt-4-1106-preview ../test_cases/list_image_files_in_folder.ipynb 7\n",
      "gpt-4-1106-preview ../test_cases/map_pixel_count_of_labels.ipynb 7\n",
      "gpt-4-1106-preview ../test_cases/mask_image.ipynb 7\n",
      "gpt-4-1106-preview ../test_cases/maximum_intensity_projection.ipynb 7\n",
      "gpt-4-1106-preview ../test_cases/mean_squared_error.ipynb 7\n",
      "gpt-4-1106-preview ../test_cases/mean_std_column.ipynb 7\n",
      "gpt-4-1106-preview ../test_cases/measure_aspect_ratio_of_regions.ipynb 7\n",
      "gpt-4-1106-preview ../test_cases/measure_intensity_of_labels.ipynb 7\n",
      "gpt-4-1106-preview ../test_cases/measure_intensity_over_time.ipynb 7\n",
      "gpt-4-1106-preview ../test_cases/measure_mean_image_intensity.ipynb 7\n",
      "gpt-4-1106-preview ../test_cases/measure_pixel_count_of_labels.ipynb 7\n",
      "gpt-4-1106-preview ../test_cases/measure_properties_of_regions.ipynb 7\n",
      "gpt-4-1106-preview ../test_cases/open_image_read_voxel_size.ipynb 7\n",
      "gpt-4-1106-preview ../test_cases/open_image_return_dimensions.ipynb 7\n",
      "gpt-4-1106-preview ../test_cases/open_nifti_image.ipynb 7\n",
      "gpt-4-1106-preview ../test_cases/open_zarr.ipynb 7\n",
      "gpt-4-1106-preview ../test_cases/pair_wise_correlation_matrix.ipynb 7\n",
      "gpt-4-1106-preview ../test_cases/radial_intensity_profile.ipynb 7\n",
      "gpt-4-1106-preview ../test_cases/region_growing_segmentation.ipynb 7\n",
      "gpt-4-1106-preview ../test_cases/remove_labels_on_edges.ipynb 7\n",
      "gpt-4-1106-preview ../test_cases/remove_noise_edge_preserving.ipynb 7\n",
      "gpt-4-1106-preview ../test_cases/remove_small_labels.ipynb 7\n",
      "gpt-4-1106-preview ../test_cases/return_hello_world.ipynb 7\n",
      "gpt-4-1106-preview ../test_cases/rgb_to_grey_image_transform.ipynb 7\n",
      "gpt-4-1106-preview ../test_cases/rotate_image_by_90_degrees.ipynb 7\n",
      "gpt-4-1106-preview ../test_cases/subsample_image.ipynb 7\n",
      "gpt-4-1106-preview ../test_cases/subtract_background_tophat.ipynb 7\n",
      "gpt-4-1106-preview ../test_cases/sum_images.ipynb 7\n",
      "gpt-4-1106-preview ../test_cases/sum_intensity_projection.ipynb 7\n",
      "gpt-4-1106-preview ../test_cases/tiled_image_processing.ipynb 7\n",
      "gpt-4-1106-preview ../test_cases/transpose_image_axes.ipynb 7\n",
      "gpt-4-1106-preview ../test_cases/t_test.ipynb 7\n",
      "gpt-4-1106-preview ../test_cases/workflow_batch_process_folder_count_labels.ipynb 7\n",
      "gpt-4-1106-preview ../test_cases/workflow_batch_process_folder_measure_intensity.ipynb 7\n",
      "gpt-4-1106-preview ../test_cases/workflow_segmentation_counting.ipynb 7\n",
      "gpt-4-1106-preview ../test_cases/workflow_segmentation_measurement_summary.ipynb 7\n",
      "gpt-4-1106-preview ../test_cases/workflow_segment_measure_umap.ipynb 7\n",
      "gpt-4-1106-preview ../test_cases/workflow_watershed_segmentation_correction_measurement.ipynb 7\n",
      "gpt-4-1106-preview ../test_cases/apply_otsu_threshold_and_count_postiive_pixels.ipynb 8\n",
      "gpt-4-1106-preview ../test_cases/binary_closing.ipynb 8\n",
      "gpt-4-1106-preview ../test_cases/binary_skeleton.ipynb 8\n",
      "gpt-4-1106-preview ../test_cases/bland_altman.ipynb 8\n",
      "gpt-4-1106-preview ../test_cases/combine_columns_of_tables.ipynb 8\n",
      "gpt-4-1106-preview ../test_cases/convex_hull_measure_area.ipynb 8\n",
      "gpt-4-1106-preview ../test_cases/convolve_images.ipynb 8\n",
      "gpt-4-1106-preview ../test_cases/count_number_of_touching_neighbors.ipynb 8\n",
      "gpt-4-1106-preview ../test_cases/count_objects_over_time.ipynb 8\n",
      "gpt-4-1106-preview ../test_cases/count_overlapping_regions.ipynb 8\n",
      "gpt-4-1106-preview ../test_cases/create_umap.ipynb 8\n",
      "gpt-4-1106-preview ../test_cases/crop_quarter_image.ipynb 8\n",
      "gpt-4-1106-preview ../test_cases/deconvolve_image.ipynb 8\n",
      "gpt-4-1106-preview ../test_cases/detect_edges.ipynb 8\n",
      "gpt-4-1106-preview ../test_cases/expand_labels_without_overlap.ipynb 8\n",
      "gpt-4-1106-preview ../test_cases/extract_surface_measure_area.ipynb 8\n",
      "gpt-4-1106-preview ../test_cases/fit_circle.ipynb 8\n",
      "gpt-4-1106-preview ../test_cases/label_binary_image_and_count_labels.ipynb 8\n",
      "gpt-4-1106-preview ../test_cases/label_sequentially.ipynb 8\n",
      "gpt-4-1106-preview ../test_cases/list_image_files_in_folder.ipynb 8\n",
      "gpt-4-1106-preview ../test_cases/map_pixel_count_of_labels.ipynb 8\n",
      "gpt-4-1106-preview ../test_cases/mask_image.ipynb 8\n",
      "gpt-4-1106-preview ../test_cases/maximum_intensity_projection.ipynb 8\n",
      "gpt-4-1106-preview ../test_cases/mean_squared_error.ipynb 8\n",
      "gpt-4-1106-preview ../test_cases/mean_std_column.ipynb 8\n",
      "gpt-4-1106-preview ../test_cases/measure_aspect_ratio_of_regions.ipynb 8\n",
      "gpt-4-1106-preview ../test_cases/measure_intensity_of_labels.ipynb 8\n",
      "gpt-4-1106-preview ../test_cases/measure_intensity_over_time.ipynb 8\n",
      "gpt-4-1106-preview ../test_cases/measure_mean_image_intensity.ipynb 8\n",
      "gpt-4-1106-preview ../test_cases/measure_pixel_count_of_labels.ipynb 8\n",
      "gpt-4-1106-preview ../test_cases/measure_properties_of_regions.ipynb 8\n",
      "gpt-4-1106-preview ../test_cases/open_image_read_voxel_size.ipynb 8\n",
      "gpt-4-1106-preview ../test_cases/open_image_return_dimensions.ipynb 8\n",
      "gpt-4-1106-preview ../test_cases/open_nifti_image.ipynb 8\n",
      "gpt-4-1106-preview ../test_cases/open_zarr.ipynb 8\n",
      "gpt-4-1106-preview ../test_cases/pair_wise_correlation_matrix.ipynb 8\n",
      "gpt-4-1106-preview ../test_cases/radial_intensity_profile.ipynb 8\n",
      "gpt-4-1106-preview ../test_cases/region_growing_segmentation.ipynb 8\n",
      "gpt-4-1106-preview ../test_cases/remove_labels_on_edges.ipynb 8\n",
      "gpt-4-1106-preview ../test_cases/remove_noise_edge_preserving.ipynb 8\n",
      "gpt-4-1106-preview ../test_cases/remove_small_labels.ipynb 8\n",
      "gpt-4-1106-preview ../test_cases/return_hello_world.ipynb 8\n",
      "gpt-4-1106-preview ../test_cases/rgb_to_grey_image_transform.ipynb 8\n",
      "gpt-4-1106-preview ../test_cases/rotate_image_by_90_degrees.ipynb 8\n",
      "gpt-4-1106-preview ../test_cases/subsample_image.ipynb 8\n",
      "gpt-4-1106-preview ../test_cases/subtract_background_tophat.ipynb 8\n",
      "gpt-4-1106-preview ../test_cases/sum_images.ipynb 8\n",
      "gpt-4-1106-preview ../test_cases/sum_intensity_projection.ipynb 8\n",
      "gpt-4-1106-preview ../test_cases/tiled_image_processing.ipynb 8\n",
      "gpt-4-1106-preview ../test_cases/transpose_image_axes.ipynb 8\n",
      "gpt-4-1106-preview ../test_cases/t_test.ipynb 8\n",
      "gpt-4-1106-preview ../test_cases/workflow_batch_process_folder_count_labels.ipynb 8\n",
      "gpt-4-1106-preview ../test_cases/workflow_batch_process_folder_measure_intensity.ipynb 8\n",
      "gpt-4-1106-preview ../test_cases/workflow_segmentation_counting.ipynb 8\n",
      "gpt-4-1106-preview ../test_cases/workflow_segmentation_measurement_summary.ipynb 8\n",
      "gpt-4-1106-preview ../test_cases/workflow_segment_measure_umap.ipynb 8\n",
      "gpt-4-1106-preview ../test_cases/workflow_watershed_segmentation_correction_measurement.ipynb 8\n",
      "gpt-4-1106-preview ../test_cases/apply_otsu_threshold_and_count_postiive_pixels.ipynb 9\n",
      "gpt-4-1106-preview ../test_cases/binary_closing.ipynb 9\n",
      "gpt-4-1106-preview ../test_cases/binary_skeleton.ipynb 9\n",
      "gpt-4-1106-preview ../test_cases/bland_altman.ipynb 9\n",
      "gpt-4-1106-preview ../test_cases/combine_columns_of_tables.ipynb 9\n",
      "gpt-4-1106-preview ../test_cases/convex_hull_measure_area.ipynb 9\n",
      "gpt-4-1106-preview ../test_cases/convolve_images.ipynb 9\n",
      "gpt-4-1106-preview ../test_cases/count_number_of_touching_neighbors.ipynb 9\n",
      "gpt-4-1106-preview ../test_cases/count_objects_over_time.ipynb 9\n",
      "gpt-4-1106-preview ../test_cases/count_overlapping_regions.ipynb 9\n",
      "gpt-4-1106-preview ../test_cases/create_umap.ipynb 9\n",
      "gpt-4-1106-preview ../test_cases/crop_quarter_image.ipynb 9\n",
      "gpt-4-1106-preview ../test_cases/deconvolve_image.ipynb 9\n",
      "gpt-4-1106-preview ../test_cases/detect_edges.ipynb 9\n",
      "gpt-4-1106-preview ../test_cases/expand_labels_without_overlap.ipynb 9\n",
      "gpt-4-1106-preview ../test_cases/extract_surface_measure_area.ipynb 9\n",
      "gpt-4-1106-preview ../test_cases/fit_circle.ipynb 9\n",
      "gpt-4-1106-preview ../test_cases/label_binary_image_and_count_labels.ipynb 9\n",
      "gpt-4-1106-preview ../test_cases/label_sequentially.ipynb 9\n",
      "gpt-4-1106-preview ../test_cases/list_image_files_in_folder.ipynb 9\n",
      "gpt-4-1106-preview ../test_cases/map_pixel_count_of_labels.ipynb 9\n",
      "gpt-4-1106-preview ../test_cases/mask_image.ipynb 9\n",
      "gpt-4-1106-preview ../test_cases/maximum_intensity_projection.ipynb 9\n",
      "gpt-4-1106-preview ../test_cases/mean_squared_error.ipynb 9\n",
      "gpt-4-1106-preview ../test_cases/mean_std_column.ipynb 9\n",
      "gpt-4-1106-preview ../test_cases/measure_aspect_ratio_of_regions.ipynb 9\n",
      "gpt-4-1106-preview ../test_cases/measure_intensity_of_labels.ipynb 9\n",
      "gpt-4-1106-preview ../test_cases/measure_intensity_over_time.ipynb 9\n",
      "gpt-4-1106-preview ../test_cases/measure_mean_image_intensity.ipynb 9\n",
      "gpt-4-1106-preview ../test_cases/measure_pixel_count_of_labels.ipynb 9\n",
      "gpt-4-1106-preview ../test_cases/measure_properties_of_regions.ipynb 9\n",
      "gpt-4-1106-preview ../test_cases/open_image_read_voxel_size.ipynb 9\n",
      "gpt-4-1106-preview ../test_cases/open_image_return_dimensions.ipynb 9\n",
      "gpt-4-1106-preview ../test_cases/open_nifti_image.ipynb 9\n",
      "gpt-4-1106-preview ../test_cases/open_zarr.ipynb 9\n",
      "gpt-4-1106-preview ../test_cases/pair_wise_correlation_matrix.ipynb 9\n",
      "gpt-4-1106-preview ../test_cases/radial_intensity_profile.ipynb 9\n",
      "gpt-4-1106-preview ../test_cases/region_growing_segmentation.ipynb 9\n",
      "gpt-4-1106-preview ../test_cases/remove_labels_on_edges.ipynb 9\n",
      "gpt-4-1106-preview ../test_cases/remove_noise_edge_preserving.ipynb 9\n",
      "gpt-4-1106-preview ../test_cases/remove_small_labels.ipynb 9\n",
      "gpt-4-1106-preview ../test_cases/return_hello_world.ipynb 9\n",
      "gpt-4-1106-preview ../test_cases/rgb_to_grey_image_transform.ipynb 9\n",
      "gpt-4-1106-preview ../test_cases/rotate_image_by_90_degrees.ipynb 9\n",
      "gpt-4-1106-preview ../test_cases/subsample_image.ipynb 9\n",
      "gpt-4-1106-preview ../test_cases/subtract_background_tophat.ipynb 9\n",
      "gpt-4-1106-preview ../test_cases/sum_images.ipynb 9\n",
      "gpt-4-1106-preview ../test_cases/sum_intensity_projection.ipynb 9\n",
      "gpt-4-1106-preview ../test_cases/tiled_image_processing.ipynb 9\n",
      "gpt-4-1106-preview ../test_cases/transpose_image_axes.ipynb 9\n",
      "gpt-4-1106-preview ../test_cases/t_test.ipynb 9\n",
      "gpt-4-1106-preview ../test_cases/workflow_batch_process_folder_count_labels.ipynb 9\n",
      "gpt-4-1106-preview ../test_cases/workflow_batch_process_folder_measure_intensity.ipynb 9\n",
      "gpt-4-1106-preview ../test_cases/workflow_segmentation_counting.ipynb 9\n",
      "gpt-4-1106-preview ../test_cases/workflow_segmentation_measurement_summary.ipynb 9\n",
      "gpt-4-1106-preview ../test_cases/workflow_segment_measure_umap.ipynb 9\n",
      "gpt-4-1106-preview ../test_cases/workflow_watershed_segmentation_correction_measurement.ipynb 9\n",
      "codellama ../test_cases/apply_otsu_threshold_and_count_postiive_pixels.ipynb 0\n",
      "codellama ../test_cases/binary_closing.ipynb 0\n",
      "codellama ../test_cases/binary_skeleton.ipynb 0\n",
      "codellama ../test_cases/bland_altman.ipynb 0\n",
      "codellama ../test_cases/combine_columns_of_tables.ipynb 0\n",
      "codellama ../test_cases/convex_hull_measure_area.ipynb 0\n",
      "codellama ../test_cases/convolve_images.ipynb 0\n",
      "codellama ../test_cases/count_number_of_touching_neighbors.ipynb 0\n",
      "codellama ../test_cases/count_objects_over_time.ipynb 0\n",
      "codellama ../test_cases/count_overlapping_regions.ipynb 0\n",
      "codellama ../test_cases/create_umap.ipynb 0\n",
      "codellama ../test_cases/crop_quarter_image.ipynb 0\n",
      "codellama ../test_cases/deconvolve_image.ipynb 0\n",
      "codellama ../test_cases/detect_edges.ipynb 0\n",
      "codellama ../test_cases/expand_labels_without_overlap.ipynb 0\n",
      "codellama ../test_cases/extract_surface_measure_area.ipynb 0\n",
      "codellama ../test_cases/fit_circle.ipynb 0\n",
      "codellama ../test_cases/label_binary_image_and_count_labels.ipynb 0\n",
      "codellama ../test_cases/label_sequentially.ipynb 0\n",
      "codellama ../test_cases/list_image_files_in_folder.ipynb 0\n",
      "codellama ../test_cases/map_pixel_count_of_labels.ipynb 0\n",
      "codellama ../test_cases/mask_image.ipynb 0\n",
      "codellama ../test_cases/maximum_intensity_projection.ipynb 0\n",
      "codellama ../test_cases/mean_squared_error.ipynb 0\n",
      "codellama ../test_cases/mean_std_column.ipynb 0\n",
      "codellama ../test_cases/measure_aspect_ratio_of_regions.ipynb 0\n",
      "codellama ../test_cases/measure_intensity_of_labels.ipynb 0\n",
      "codellama ../test_cases/measure_intensity_over_time.ipynb 0\n",
      "codellama ../test_cases/measure_mean_image_intensity.ipynb 0\n",
      "codellama ../test_cases/measure_pixel_count_of_labels.ipynb 0\n",
      "codellama ../test_cases/measure_properties_of_regions.ipynb 0\n",
      "codellama ../test_cases/open_image_read_voxel_size.ipynb 0\n",
      "codellama ../test_cases/open_image_return_dimensions.ipynb 0\n",
      "codellama ../test_cases/open_nifti_image.ipynb 0\n",
      "codellama ../test_cases/open_zarr.ipynb 0\n",
      "codellama ../test_cases/pair_wise_correlation_matrix.ipynb 0\n",
      "codellama ../test_cases/radial_intensity_profile.ipynb 0\n",
      "codellama ../test_cases/region_growing_segmentation.ipynb 0\n",
      "codellama ../test_cases/remove_labels_on_edges.ipynb 0\n",
      "codellama ../test_cases/remove_noise_edge_preserving.ipynb 0\n",
      "codellama ../test_cases/remove_small_labels.ipynb 0\n",
      "codellama ../test_cases/return_hello_world.ipynb 0\n",
      "codellama ../test_cases/rgb_to_grey_image_transform.ipynb 0\n",
      "codellama ../test_cases/rotate_image_by_90_degrees.ipynb 0\n",
      "codellama ../test_cases/subsample_image.ipynb 0\n",
      "codellama ../test_cases/subtract_background_tophat.ipynb 0\n",
      "codellama ../test_cases/sum_images.ipynb 0\n",
      "codellama ../test_cases/sum_intensity_projection.ipynb 0\n",
      "codellama ../test_cases/tiled_image_processing.ipynb 0\n",
      "codellama ../test_cases/transpose_image_axes.ipynb 0\n",
      "codellama ../test_cases/t_test.ipynb 0\n",
      "codellama ../test_cases/workflow_batch_process_folder_count_labels.ipynb 0\n",
      "codellama ../test_cases/workflow_batch_process_folder_measure_intensity.ipynb 0\n",
      "codellama ../test_cases/workflow_segmentation_counting.ipynb 0\n",
      "codellama ../test_cases/workflow_segmentation_measurement_summary.ipynb 0\n",
      "codellama ../test_cases/workflow_segment_measure_umap.ipynb 0\n",
      "codellama ../test_cases/workflow_watershed_segmentation_correction_measurement.ipynb 0\n",
      "codellama ../test_cases/apply_otsu_threshold_and_count_postiive_pixels.ipynb 1\n",
      "codellama ../test_cases/binary_closing.ipynb 1\n",
      "codellama ../test_cases/binary_skeleton.ipynb 1\n",
      "codellama ../test_cases/bland_altman.ipynb 1\n",
      "codellama ../test_cases/combine_columns_of_tables.ipynb 1\n",
      "codellama ../test_cases/convex_hull_measure_area.ipynb 1\n",
      "codellama ../test_cases/convolve_images.ipynb 1\n",
      "codellama ../test_cases/count_number_of_touching_neighbors.ipynb 1\n",
      "codellama ../test_cases/count_objects_over_time.ipynb 1\n",
      "codellama ../test_cases/count_overlapping_regions.ipynb 1\n",
      "codellama ../test_cases/create_umap.ipynb 1\n",
      "codellama ../test_cases/crop_quarter_image.ipynb 1\n",
      "codellama ../test_cases/deconvolve_image.ipynb 1\n",
      "codellama ../test_cases/detect_edges.ipynb 1\n",
      "codellama ../test_cases/expand_labels_without_overlap.ipynb 1\n",
      "codellama ../test_cases/extract_surface_measure_area.ipynb 1\n",
      "codellama ../test_cases/fit_circle.ipynb 1\n",
      "codellama ../test_cases/label_binary_image_and_count_labels.ipynb 1\n",
      "codellama ../test_cases/label_sequentially.ipynb 1\n",
      "codellama ../test_cases/list_image_files_in_folder.ipynb 1\n",
      "codellama ../test_cases/map_pixel_count_of_labels.ipynb 1\n",
      "codellama ../test_cases/mask_image.ipynb 1\n",
      "codellama ../test_cases/maximum_intensity_projection.ipynb 1\n",
      "codellama ../test_cases/mean_squared_error.ipynb 1\n",
      "codellama ../test_cases/mean_std_column.ipynb 1\n",
      "codellama ../test_cases/measure_aspect_ratio_of_regions.ipynb 1\n",
      "codellama ../test_cases/measure_intensity_of_labels.ipynb 1\n",
      "codellama ../test_cases/measure_intensity_over_time.ipynb 1\n",
      "codellama ../test_cases/measure_mean_image_intensity.ipynb 1\n",
      "codellama ../test_cases/measure_pixel_count_of_labels.ipynb 1\n",
      "codellama ../test_cases/measure_properties_of_regions.ipynb 1\n",
      "codellama ../test_cases/open_image_read_voxel_size.ipynb 1\n",
      "codellama ../test_cases/open_image_return_dimensions.ipynb 1\n",
      "codellama ../test_cases/open_nifti_image.ipynb 1\n",
      "codellama ../test_cases/open_zarr.ipynb 1\n",
      "codellama ../test_cases/pair_wise_correlation_matrix.ipynb 1\n",
      "codellama ../test_cases/radial_intensity_profile.ipynb 1\n",
      "codellama ../test_cases/region_growing_segmentation.ipynb 1\n",
      "codellama ../test_cases/remove_labels_on_edges.ipynb 1\n",
      "codellama ../test_cases/remove_noise_edge_preserving.ipynb 1\n",
      "codellama ../test_cases/remove_small_labels.ipynb 1\n",
      "codellama ../test_cases/return_hello_world.ipynb 1\n",
      "codellama ../test_cases/rgb_to_grey_image_transform.ipynb 1\n",
      "codellama ../test_cases/rotate_image_by_90_degrees.ipynb 1\n",
      "codellama ../test_cases/subsample_image.ipynb 1\n",
      "codellama ../test_cases/subtract_background_tophat.ipynb 1\n",
      "codellama ../test_cases/sum_images.ipynb 1\n",
      "codellama ../test_cases/sum_intensity_projection.ipynb 1\n",
      "codellama ../test_cases/tiled_image_processing.ipynb 1\n",
      "codellama ../test_cases/transpose_image_axes.ipynb 1\n",
      "codellama ../test_cases/t_test.ipynb 1\n",
      "codellama ../test_cases/workflow_batch_process_folder_count_labels.ipynb 1\n",
      "codellama ../test_cases/workflow_batch_process_folder_measure_intensity.ipynb 1\n",
      "codellama ../test_cases/workflow_segmentation_counting.ipynb 1\n",
      "codellama ../test_cases/workflow_segmentation_measurement_summary.ipynb 1\n",
      "codellama ../test_cases/workflow_segment_measure_umap.ipynb 1\n",
      "codellama ../test_cases/workflow_watershed_segmentation_correction_measurement.ipynb 1\n",
      "codellama ../test_cases/apply_otsu_threshold_and_count_postiive_pixels.ipynb 2\n",
      "codellama ../test_cases/binary_closing.ipynb 2\n",
      "codellama ../test_cases/binary_skeleton.ipynb 2\n",
      "codellama ../test_cases/bland_altman.ipynb 2\n",
      "codellama ../test_cases/combine_columns_of_tables.ipynb 2\n",
      "codellama ../test_cases/convex_hull_measure_area.ipynb 2\n",
      "codellama ../test_cases/convolve_images.ipynb 2\n",
      "codellama ../test_cases/count_number_of_touching_neighbors.ipynb 2\n",
      "codellama ../test_cases/count_objects_over_time.ipynb 2\n",
      "codellama ../test_cases/count_overlapping_regions.ipynb 2\n",
      "codellama ../test_cases/create_umap.ipynb 2\n",
      "codellama ../test_cases/crop_quarter_image.ipynb 2\n",
      "codellama ../test_cases/deconvolve_image.ipynb 2\n",
      "codellama ../test_cases/detect_edges.ipynb 2\n",
      "codellama ../test_cases/expand_labels_without_overlap.ipynb 2\n",
      "codellama ../test_cases/extract_surface_measure_area.ipynb 2\n",
      "codellama ../test_cases/fit_circle.ipynb 2\n",
      "codellama ../test_cases/label_binary_image_and_count_labels.ipynb 2\n",
      "codellama ../test_cases/label_sequentially.ipynb 2\n",
      "codellama ../test_cases/list_image_files_in_folder.ipynb 2\n",
      "codellama ../test_cases/map_pixel_count_of_labels.ipynb 2\n",
      "codellama ../test_cases/mask_image.ipynb 2\n",
      "codellama ../test_cases/maximum_intensity_projection.ipynb 2\n",
      "codellama ../test_cases/mean_squared_error.ipynb 2\n",
      "codellama ../test_cases/mean_std_column.ipynb 2\n",
      "codellama ../test_cases/measure_aspect_ratio_of_regions.ipynb 2\n",
      "codellama ../test_cases/measure_intensity_of_labels.ipynb 2\n",
      "codellama ../test_cases/measure_intensity_over_time.ipynb 2\n",
      "codellama ../test_cases/measure_mean_image_intensity.ipynb 2\n",
      "codellama ../test_cases/measure_pixel_count_of_labels.ipynb 2\n",
      "codellama ../test_cases/measure_properties_of_regions.ipynb 2\n",
      "codellama ../test_cases/open_image_read_voxel_size.ipynb 2\n",
      "codellama ../test_cases/open_image_return_dimensions.ipynb 2\n",
      "codellama ../test_cases/open_nifti_image.ipynb 2\n",
      "codellama ../test_cases/open_zarr.ipynb 2\n",
      "codellama ../test_cases/pair_wise_correlation_matrix.ipynb 2\n",
      "codellama ../test_cases/radial_intensity_profile.ipynb 2\n",
      "codellama ../test_cases/region_growing_segmentation.ipynb 2\n",
      "codellama ../test_cases/remove_labels_on_edges.ipynb 2\n",
      "codellama ../test_cases/remove_noise_edge_preserving.ipynb 2\n",
      "codellama ../test_cases/remove_small_labels.ipynb 2\n",
      "codellama ../test_cases/return_hello_world.ipynb 2\n",
      "codellama ../test_cases/rgb_to_grey_image_transform.ipynb 2\n",
      "codellama ../test_cases/rotate_image_by_90_degrees.ipynb 2\n",
      "codellama ../test_cases/subsample_image.ipynb 2\n",
      "codellama ../test_cases/subtract_background_tophat.ipynb 2\n",
      "codellama ../test_cases/sum_images.ipynb 2\n",
      "codellama ../test_cases/sum_intensity_projection.ipynb 2\n",
      "codellama ../test_cases/tiled_image_processing.ipynb 2\n",
      "codellama ../test_cases/transpose_image_axes.ipynb 2\n",
      "codellama ../test_cases/t_test.ipynb 2\n",
      "codellama ../test_cases/workflow_batch_process_folder_count_labels.ipynb 2\n",
      "codellama ../test_cases/workflow_batch_process_folder_measure_intensity.ipynb 2\n",
      "codellama ../test_cases/workflow_segmentation_counting.ipynb 2\n",
      "codellama ../test_cases/workflow_segmentation_measurement_summary.ipynb 2\n",
      "codellama ../test_cases/workflow_segment_measure_umap.ipynb 2\n",
      "codellama ../test_cases/workflow_watershed_segmentation_correction_measurement.ipynb 2\n",
      "codellama ../test_cases/apply_otsu_threshold_and_count_postiive_pixels.ipynb 3\n",
      "codellama ../test_cases/binary_closing.ipynb 3\n",
      "codellama ../test_cases/binary_skeleton.ipynb 3\n",
      "codellama ../test_cases/bland_altman.ipynb 3\n",
      "codellama ../test_cases/combine_columns_of_tables.ipynb 3\n",
      "codellama ../test_cases/convex_hull_measure_area.ipynb 3\n",
      "codellama ../test_cases/convolve_images.ipynb 3\n",
      "codellama ../test_cases/count_number_of_touching_neighbors.ipynb 3\n",
      "codellama ../test_cases/count_objects_over_time.ipynb 3\n",
      "codellama ../test_cases/count_overlapping_regions.ipynb 3\n",
      "codellama ../test_cases/create_umap.ipynb 3\n",
      "codellama ../test_cases/crop_quarter_image.ipynb 3\n",
      "codellama ../test_cases/deconvolve_image.ipynb 3\n",
      "codellama ../test_cases/detect_edges.ipynb 3\n",
      "codellama ../test_cases/expand_labels_without_overlap.ipynb 3\n",
      "codellama ../test_cases/extract_surface_measure_area.ipynb 3\n",
      "codellama ../test_cases/fit_circle.ipynb 3\n",
      "codellama ../test_cases/label_binary_image_and_count_labels.ipynb 3\n",
      "codellama ../test_cases/label_sequentially.ipynb 3\n",
      "codellama ../test_cases/list_image_files_in_folder.ipynb 3\n",
      "codellama ../test_cases/map_pixel_count_of_labels.ipynb 3\n",
      "codellama ../test_cases/mask_image.ipynb 3\n",
      "codellama ../test_cases/maximum_intensity_projection.ipynb 3\n",
      "codellama ../test_cases/mean_squared_error.ipynb 3\n",
      "codellama ../test_cases/mean_std_column.ipynb 3\n",
      "codellama ../test_cases/measure_aspect_ratio_of_regions.ipynb 3\n",
      "codellama ../test_cases/measure_intensity_of_labels.ipynb 3\n",
      "codellama ../test_cases/measure_intensity_over_time.ipynb 3\n",
      "codellama ../test_cases/measure_mean_image_intensity.ipynb 3\n",
      "codellama ../test_cases/measure_pixel_count_of_labels.ipynb 3\n",
      "codellama ../test_cases/measure_properties_of_regions.ipynb 3\n",
      "codellama ../test_cases/open_image_read_voxel_size.ipynb 3\n",
      "codellama ../test_cases/open_image_return_dimensions.ipynb 3\n",
      "codellama ../test_cases/open_nifti_image.ipynb 3\n",
      "codellama ../test_cases/open_zarr.ipynb 3\n",
      "codellama ../test_cases/pair_wise_correlation_matrix.ipynb 3\n",
      "codellama ../test_cases/radial_intensity_profile.ipynb 3\n",
      "codellama ../test_cases/region_growing_segmentation.ipynb 3\n",
      "codellama ../test_cases/remove_labels_on_edges.ipynb 3\n",
      "codellama ../test_cases/remove_noise_edge_preserving.ipynb 3\n",
      "codellama ../test_cases/remove_small_labels.ipynb 3\n",
      "codellama ../test_cases/return_hello_world.ipynb 3\n",
      "codellama ../test_cases/rgb_to_grey_image_transform.ipynb 3\n",
      "codellama ../test_cases/rotate_image_by_90_degrees.ipynb 3\n",
      "codellama ../test_cases/subsample_image.ipynb 3\n",
      "codellama ../test_cases/subtract_background_tophat.ipynb 3\n",
      "codellama ../test_cases/sum_images.ipynb 3\n",
      "codellama ../test_cases/sum_intensity_projection.ipynb 3\n",
      "codellama ../test_cases/tiled_image_processing.ipynb 3\n",
      "codellama ../test_cases/transpose_image_axes.ipynb 3\n",
      "codellama ../test_cases/t_test.ipynb 3\n",
      "codellama ../test_cases/workflow_batch_process_folder_count_labels.ipynb 3\n",
      "codellama ../test_cases/workflow_batch_process_folder_measure_intensity.ipynb 3\n",
      "codellama ../test_cases/workflow_segmentation_counting.ipynb 3\n",
      "codellama ../test_cases/workflow_segmentation_measurement_summary.ipynb 3\n",
      "codellama ../test_cases/workflow_segment_measure_umap.ipynb 3\n",
      "codellama ../test_cases/workflow_watershed_segmentation_correction_measurement.ipynb 3\n",
      "codellama ../test_cases/apply_otsu_threshold_and_count_postiive_pixels.ipynb 4\n",
      "codellama ../test_cases/binary_closing.ipynb 4\n",
      "codellama ../test_cases/binary_skeleton.ipynb 4\n",
      "codellama ../test_cases/bland_altman.ipynb 4\n",
      "codellama ../test_cases/combine_columns_of_tables.ipynb 4\n",
      "codellama ../test_cases/convex_hull_measure_area.ipynb 4\n",
      "codellama ../test_cases/convolve_images.ipynb 4\n",
      "codellama ../test_cases/count_number_of_touching_neighbors.ipynb 4\n",
      "codellama ../test_cases/count_objects_over_time.ipynb 4\n",
      "codellama ../test_cases/count_overlapping_regions.ipynb 4\n",
      "codellama ../test_cases/create_umap.ipynb 4\n",
      "codellama ../test_cases/crop_quarter_image.ipynb 4\n",
      "codellama ../test_cases/deconvolve_image.ipynb 4\n",
      "codellama ../test_cases/detect_edges.ipynb 4\n",
      "codellama ../test_cases/expand_labels_without_overlap.ipynb 4\n",
      "codellama ../test_cases/extract_surface_measure_area.ipynb 4\n",
      "codellama ../test_cases/fit_circle.ipynb 4\n",
      "codellama ../test_cases/label_binary_image_and_count_labels.ipynb 4\n",
      "codellama ../test_cases/label_sequentially.ipynb 4\n",
      "codellama ../test_cases/list_image_files_in_folder.ipynb 4\n",
      "codellama ../test_cases/map_pixel_count_of_labels.ipynb 4\n",
      "codellama ../test_cases/mask_image.ipynb 4\n",
      "codellama ../test_cases/maximum_intensity_projection.ipynb 4\n",
      "codellama ../test_cases/mean_squared_error.ipynb 4\n",
      "codellama ../test_cases/mean_std_column.ipynb 4\n",
      "codellama ../test_cases/measure_aspect_ratio_of_regions.ipynb 4\n",
      "codellama ../test_cases/measure_intensity_of_labels.ipynb 4\n",
      "codellama ../test_cases/measure_intensity_over_time.ipynb 4\n",
      "codellama ../test_cases/measure_mean_image_intensity.ipynb 4\n",
      "codellama ../test_cases/measure_pixel_count_of_labels.ipynb 4\n",
      "codellama ../test_cases/measure_properties_of_regions.ipynb 4\n",
      "codellama ../test_cases/open_image_read_voxel_size.ipynb 4\n",
      "codellama ../test_cases/open_image_return_dimensions.ipynb 4\n",
      "codellama ../test_cases/open_nifti_image.ipynb 4\n",
      "codellama ../test_cases/open_zarr.ipynb 4\n",
      "codellama ../test_cases/pair_wise_correlation_matrix.ipynb 4\n",
      "codellama ../test_cases/radial_intensity_profile.ipynb 4\n",
      "codellama ../test_cases/region_growing_segmentation.ipynb 4\n",
      "codellama ../test_cases/remove_labels_on_edges.ipynb 4\n",
      "codellama ../test_cases/remove_noise_edge_preserving.ipynb 4\n",
      "codellama ../test_cases/remove_small_labels.ipynb 4\n",
      "codellama ../test_cases/return_hello_world.ipynb 4\n",
      "codellama ../test_cases/rgb_to_grey_image_transform.ipynb 4\n",
      "codellama ../test_cases/rotate_image_by_90_degrees.ipynb 4\n",
      "codellama ../test_cases/subsample_image.ipynb 4\n",
      "codellama ../test_cases/subtract_background_tophat.ipynb 4\n",
      "codellama ../test_cases/sum_images.ipynb 4\n",
      "codellama ../test_cases/sum_intensity_projection.ipynb 4\n",
      "codellama ../test_cases/tiled_image_processing.ipynb 4\n",
      "codellama ../test_cases/transpose_image_axes.ipynb 4\n",
      "codellama ../test_cases/t_test.ipynb 4\n",
      "codellama ../test_cases/workflow_batch_process_folder_count_labels.ipynb 4\n",
      "codellama ../test_cases/workflow_batch_process_folder_measure_intensity.ipynb 4\n",
      "codellama ../test_cases/workflow_segmentation_counting.ipynb 4\n",
      "codellama ../test_cases/workflow_segmentation_measurement_summary.ipynb 4\n",
      "codellama ../test_cases/workflow_segment_measure_umap.ipynb 4\n",
      "codellama ../test_cases/workflow_watershed_segmentation_correction_measurement.ipynb 4\n",
      "codellama ../test_cases/apply_otsu_threshold_and_count_postiive_pixels.ipynb 5\n",
      "codellama ../test_cases/binary_closing.ipynb 5\n",
      "codellama ../test_cases/binary_skeleton.ipynb 5\n",
      "codellama ../test_cases/bland_altman.ipynb 5\n",
      "codellama ../test_cases/combine_columns_of_tables.ipynb 5\n",
      "codellama ../test_cases/convex_hull_measure_area.ipynb 5\n",
      "codellama ../test_cases/convolve_images.ipynb 5\n",
      "codellama ../test_cases/count_number_of_touching_neighbors.ipynb 5\n",
      "codellama ../test_cases/count_objects_over_time.ipynb 5\n",
      "codellama ../test_cases/count_overlapping_regions.ipynb 5\n",
      "codellama ../test_cases/create_umap.ipynb 5\n",
      "codellama ../test_cases/crop_quarter_image.ipynb 5\n",
      "codellama ../test_cases/deconvolve_image.ipynb 5\n",
      "codellama ../test_cases/detect_edges.ipynb 5\n",
      "codellama ../test_cases/expand_labels_without_overlap.ipynb 5\n",
      "codellama ../test_cases/extract_surface_measure_area.ipynb 5\n",
      "codellama ../test_cases/fit_circle.ipynb 5\n",
      "codellama ../test_cases/label_binary_image_and_count_labels.ipynb 5\n",
      "codellama ../test_cases/label_sequentially.ipynb 5\n",
      "codellama ../test_cases/list_image_files_in_folder.ipynb 5\n",
      "codellama ../test_cases/map_pixel_count_of_labels.ipynb 5\n",
      "codellama ../test_cases/mask_image.ipynb 5\n",
      "codellama ../test_cases/maximum_intensity_projection.ipynb 5\n",
      "codellama ../test_cases/mean_squared_error.ipynb 5\n",
      "codellama ../test_cases/mean_std_column.ipynb 5\n",
      "codellama ../test_cases/measure_aspect_ratio_of_regions.ipynb 5\n",
      "codellama ../test_cases/measure_intensity_of_labels.ipynb 5\n",
      "codellama ../test_cases/measure_intensity_over_time.ipynb 5\n",
      "codellama ../test_cases/measure_mean_image_intensity.ipynb 5\n",
      "codellama ../test_cases/measure_pixel_count_of_labels.ipynb 5\n",
      "codellama ../test_cases/measure_properties_of_regions.ipynb 5\n",
      "codellama ../test_cases/open_image_read_voxel_size.ipynb 5\n",
      "codellama ../test_cases/open_image_return_dimensions.ipynb 5\n",
      "codellama ../test_cases/open_nifti_image.ipynb 5\n",
      "codellama ../test_cases/open_zarr.ipynb 5\n",
      "codellama ../test_cases/pair_wise_correlation_matrix.ipynb 5\n",
      "codellama ../test_cases/radial_intensity_profile.ipynb 5\n",
      "codellama ../test_cases/region_growing_segmentation.ipynb 5\n",
      "codellama ../test_cases/remove_labels_on_edges.ipynb 5\n",
      "codellama ../test_cases/remove_noise_edge_preserving.ipynb 5\n",
      "codellama ../test_cases/remove_small_labels.ipynb 5\n",
      "codellama ../test_cases/return_hello_world.ipynb 5\n",
      "codellama ../test_cases/rgb_to_grey_image_transform.ipynb 5\n",
      "codellama ../test_cases/rotate_image_by_90_degrees.ipynb 5\n",
      "codellama ../test_cases/subsample_image.ipynb 5\n",
      "codellama ../test_cases/subtract_background_tophat.ipynb 5\n",
      "codellama ../test_cases/sum_images.ipynb 5\n",
      "codellama ../test_cases/sum_intensity_projection.ipynb 5\n",
      "codellama ../test_cases/tiled_image_processing.ipynb 5\n",
      "codellama ../test_cases/transpose_image_axes.ipynb 5\n",
      "codellama ../test_cases/t_test.ipynb 5\n",
      "codellama ../test_cases/workflow_batch_process_folder_count_labels.ipynb 5\n",
      "codellama ../test_cases/workflow_batch_process_folder_measure_intensity.ipynb 5\n",
      "codellama ../test_cases/workflow_segmentation_counting.ipynb 5\n",
      "codellama ../test_cases/workflow_segmentation_measurement_summary.ipynb 5\n",
      "codellama ../test_cases/workflow_segment_measure_umap.ipynb 5\n",
      "codellama ../test_cases/workflow_watershed_segmentation_correction_measurement.ipynb 5\n",
      "codellama ../test_cases/apply_otsu_threshold_and_count_postiive_pixels.ipynb 6\n",
      "codellama ../test_cases/binary_closing.ipynb 6\n",
      "codellama ../test_cases/binary_skeleton.ipynb 6\n",
      "codellama ../test_cases/bland_altman.ipynb 6\n",
      "codellama ../test_cases/combine_columns_of_tables.ipynb 6\n",
      "codellama ../test_cases/convex_hull_measure_area.ipynb 6\n",
      "codellama ../test_cases/convolve_images.ipynb 6\n",
      "codellama ../test_cases/count_number_of_touching_neighbors.ipynb 6\n",
      "codellama ../test_cases/count_objects_over_time.ipynb 6\n",
      "codellama ../test_cases/count_overlapping_regions.ipynb 6\n",
      "codellama ../test_cases/create_umap.ipynb 6\n",
      "codellama ../test_cases/crop_quarter_image.ipynb 6\n",
      "codellama ../test_cases/deconvolve_image.ipynb 6\n",
      "codellama ../test_cases/detect_edges.ipynb 6\n",
      "codellama ../test_cases/expand_labels_without_overlap.ipynb 6\n",
      "codellama ../test_cases/extract_surface_measure_area.ipynb 6\n",
      "codellama ../test_cases/fit_circle.ipynb 6\n",
      "codellama ../test_cases/label_binary_image_and_count_labels.ipynb 6\n",
      "codellama ../test_cases/label_sequentially.ipynb 6\n",
      "codellama ../test_cases/list_image_files_in_folder.ipynb 6\n",
      "codellama ../test_cases/map_pixel_count_of_labels.ipynb 6\n",
      "codellama ../test_cases/mask_image.ipynb 6\n",
      "codellama ../test_cases/maximum_intensity_projection.ipynb 6\n",
      "codellama ../test_cases/mean_squared_error.ipynb 6\n",
      "codellama ../test_cases/mean_std_column.ipynb 6\n",
      "codellama ../test_cases/measure_aspect_ratio_of_regions.ipynb 6\n",
      "codellama ../test_cases/measure_intensity_of_labels.ipynb 6\n",
      "codellama ../test_cases/measure_intensity_over_time.ipynb 6\n",
      "codellama ../test_cases/measure_mean_image_intensity.ipynb 6\n",
      "codellama ../test_cases/measure_pixel_count_of_labels.ipynb 6\n",
      "codellama ../test_cases/measure_properties_of_regions.ipynb 6\n",
      "codellama ../test_cases/open_image_read_voxel_size.ipynb 6\n",
      "codellama ../test_cases/open_image_return_dimensions.ipynb 6\n",
      "codellama ../test_cases/open_nifti_image.ipynb 6\n",
      "codellama ../test_cases/open_zarr.ipynb 6\n",
      "codellama ../test_cases/pair_wise_correlation_matrix.ipynb 6\n",
      "codellama ../test_cases/radial_intensity_profile.ipynb 6\n",
      "codellama ../test_cases/region_growing_segmentation.ipynb 6\n",
      "codellama ../test_cases/remove_labels_on_edges.ipynb 6\n",
      "codellama ../test_cases/remove_noise_edge_preserving.ipynb 6\n",
      "codellama ../test_cases/remove_small_labels.ipynb 6\n",
      "codellama ../test_cases/return_hello_world.ipynb 6\n",
      "codellama ../test_cases/rgb_to_grey_image_transform.ipynb 6\n",
      "codellama ../test_cases/rotate_image_by_90_degrees.ipynb 6\n",
      "codellama ../test_cases/subsample_image.ipynb 6\n",
      "codellama ../test_cases/subtract_background_tophat.ipynb 6\n",
      "codellama ../test_cases/sum_images.ipynb 6\n",
      "codellama ../test_cases/sum_intensity_projection.ipynb 6\n",
      "codellama ../test_cases/tiled_image_processing.ipynb 6\n",
      "codellama ../test_cases/transpose_image_axes.ipynb 6\n",
      "codellama ../test_cases/t_test.ipynb 6\n",
      "codellama ../test_cases/workflow_batch_process_folder_count_labels.ipynb 6\n",
      "codellama ../test_cases/workflow_batch_process_folder_measure_intensity.ipynb 6\n",
      "codellama ../test_cases/workflow_segmentation_counting.ipynb 6\n",
      "codellama ../test_cases/workflow_segmentation_measurement_summary.ipynb 6\n",
      "codellama ../test_cases/workflow_segment_measure_umap.ipynb 6\n",
      "codellama ../test_cases/workflow_watershed_segmentation_correction_measurement.ipynb 6\n",
      "codellama ../test_cases/apply_otsu_threshold_and_count_postiive_pixels.ipynb 7\n",
      "codellama ../test_cases/binary_closing.ipynb 7\n",
      "codellama ../test_cases/binary_skeleton.ipynb 7\n",
      "codellama ../test_cases/bland_altman.ipynb 7\n",
      "codellama ../test_cases/combine_columns_of_tables.ipynb 7\n",
      "codellama ../test_cases/convex_hull_measure_area.ipynb 7\n",
      "codellama ../test_cases/convolve_images.ipynb 7\n",
      "codellama ../test_cases/count_number_of_touching_neighbors.ipynb 7\n",
      "codellama ../test_cases/count_objects_over_time.ipynb 7\n",
      "codellama ../test_cases/count_overlapping_regions.ipynb 7\n",
      "codellama ../test_cases/create_umap.ipynb 7\n",
      "codellama ../test_cases/crop_quarter_image.ipynb 7\n",
      "codellama ../test_cases/deconvolve_image.ipynb 7\n",
      "codellama ../test_cases/detect_edges.ipynb 7\n",
      "codellama ../test_cases/expand_labels_without_overlap.ipynb 7\n",
      "codellama ../test_cases/extract_surface_measure_area.ipynb 7\n",
      "codellama ../test_cases/fit_circle.ipynb 7\n",
      "codellama ../test_cases/label_binary_image_and_count_labels.ipynb 7\n",
      "codellama ../test_cases/label_sequentially.ipynb 7\n",
      "codellama ../test_cases/list_image_files_in_folder.ipynb 7\n",
      "codellama ../test_cases/map_pixel_count_of_labels.ipynb 7\n",
      "codellama ../test_cases/mask_image.ipynb 7\n",
      "codellama ../test_cases/maximum_intensity_projection.ipynb 7\n",
      "codellama ../test_cases/mean_squared_error.ipynb 7\n",
      "codellama ../test_cases/mean_std_column.ipynb 7\n",
      "codellama ../test_cases/measure_aspect_ratio_of_regions.ipynb 7\n",
      "codellama ../test_cases/measure_intensity_of_labels.ipynb 7\n",
      "codellama ../test_cases/measure_intensity_over_time.ipynb 7\n",
      "codellama ../test_cases/measure_mean_image_intensity.ipynb 7\n",
      "codellama ../test_cases/measure_pixel_count_of_labels.ipynb 7\n",
      "codellama ../test_cases/measure_properties_of_regions.ipynb 7\n",
      "codellama ../test_cases/open_image_read_voxel_size.ipynb 7\n",
      "codellama ../test_cases/open_image_return_dimensions.ipynb 7\n",
      "codellama ../test_cases/open_nifti_image.ipynb 7\n",
      "codellama ../test_cases/open_zarr.ipynb 7\n",
      "codellama ../test_cases/pair_wise_correlation_matrix.ipynb 7\n",
      "codellama ../test_cases/radial_intensity_profile.ipynb 7\n",
      "codellama ../test_cases/region_growing_segmentation.ipynb 7\n",
      "codellama ../test_cases/remove_labels_on_edges.ipynb 7\n",
      "codellama ../test_cases/remove_noise_edge_preserving.ipynb 7\n",
      "codellama ../test_cases/remove_small_labels.ipynb 7\n",
      "codellama ../test_cases/return_hello_world.ipynb 7\n",
      "codellama ../test_cases/rgb_to_grey_image_transform.ipynb 7\n",
      "codellama ../test_cases/rotate_image_by_90_degrees.ipynb 7\n",
      "codellama ../test_cases/subsample_image.ipynb 7\n",
      "codellama ../test_cases/subtract_background_tophat.ipynb 7\n",
      "codellama ../test_cases/sum_images.ipynb 7\n",
      "codellama ../test_cases/sum_intensity_projection.ipynb 7\n",
      "codellama ../test_cases/tiled_image_processing.ipynb 7\n",
      "codellama ../test_cases/transpose_image_axes.ipynb 7\n",
      "codellama ../test_cases/t_test.ipynb 7\n",
      "codellama ../test_cases/workflow_batch_process_folder_count_labels.ipynb 7\n",
      "codellama ../test_cases/workflow_batch_process_folder_measure_intensity.ipynb 7\n",
      "codellama ../test_cases/workflow_segmentation_counting.ipynb 7\n",
      "codellama ../test_cases/workflow_segmentation_measurement_summary.ipynb 7\n",
      "codellama ../test_cases/workflow_segment_measure_umap.ipynb 7\n",
      "codellama ../test_cases/workflow_watershed_segmentation_correction_measurement.ipynb 7\n",
      "codellama ../test_cases/apply_otsu_threshold_and_count_postiive_pixels.ipynb 8\n",
      "codellama ../test_cases/binary_closing.ipynb 8\n",
      "codellama ../test_cases/binary_skeleton.ipynb 8\n",
      "codellama ../test_cases/bland_altman.ipynb 8\n",
      "codellama ../test_cases/combine_columns_of_tables.ipynb 8\n",
      "codellama ../test_cases/convex_hull_measure_area.ipynb 8\n",
      "codellama ../test_cases/convolve_images.ipynb 8\n",
      "codellama ../test_cases/count_number_of_touching_neighbors.ipynb 8\n",
      "codellama ../test_cases/count_objects_over_time.ipynb 8\n",
      "codellama ../test_cases/count_overlapping_regions.ipynb 8\n",
      "codellama ../test_cases/create_umap.ipynb 8\n",
      "codellama ../test_cases/crop_quarter_image.ipynb 8\n",
      "codellama ../test_cases/deconvolve_image.ipynb 8\n",
      "codellama ../test_cases/detect_edges.ipynb 8\n",
      "codellama ../test_cases/expand_labels_without_overlap.ipynb 8\n",
      "codellama ../test_cases/extract_surface_measure_area.ipynb 8\n",
      "codellama ../test_cases/fit_circle.ipynb 8\n",
      "codellama ../test_cases/label_binary_image_and_count_labels.ipynb 8\n",
      "codellama ../test_cases/label_sequentially.ipynb 8\n",
      "codellama ../test_cases/list_image_files_in_folder.ipynb 8\n",
      "codellama ../test_cases/map_pixel_count_of_labels.ipynb 8\n",
      "codellama ../test_cases/mask_image.ipynb 8\n",
      "codellama ../test_cases/maximum_intensity_projection.ipynb 8\n",
      "codellama ../test_cases/mean_squared_error.ipynb 8\n",
      "codellama ../test_cases/mean_std_column.ipynb 8\n",
      "codellama ../test_cases/measure_aspect_ratio_of_regions.ipynb 8\n",
      "codellama ../test_cases/measure_intensity_of_labels.ipynb 8\n",
      "codellama ../test_cases/measure_intensity_over_time.ipynb 8\n",
      "codellama ../test_cases/measure_mean_image_intensity.ipynb 8\n",
      "codellama ../test_cases/measure_pixel_count_of_labels.ipynb 8\n",
      "codellama ../test_cases/measure_properties_of_regions.ipynb 8\n",
      "codellama ../test_cases/open_image_read_voxel_size.ipynb 8\n",
      "codellama ../test_cases/open_image_return_dimensions.ipynb 8\n",
      "codellama ../test_cases/open_nifti_image.ipynb 8\n",
      "codellama ../test_cases/open_zarr.ipynb 8\n",
      "codellama ../test_cases/pair_wise_correlation_matrix.ipynb 8\n",
      "codellama ../test_cases/radial_intensity_profile.ipynb 8\n",
      "codellama ../test_cases/region_growing_segmentation.ipynb 8\n",
      "codellama ../test_cases/remove_labels_on_edges.ipynb 8\n",
      "codellama ../test_cases/remove_noise_edge_preserving.ipynb 8\n",
      "codellama ../test_cases/remove_small_labels.ipynb 8\n",
      "codellama ../test_cases/return_hello_world.ipynb 8\n",
      "codellama ../test_cases/rgb_to_grey_image_transform.ipynb 8\n",
      "codellama ../test_cases/rotate_image_by_90_degrees.ipynb 8\n",
      "codellama ../test_cases/subsample_image.ipynb 8\n",
      "codellama ../test_cases/subtract_background_tophat.ipynb 8\n",
      "codellama ../test_cases/sum_images.ipynb 8\n",
      "codellama ../test_cases/sum_intensity_projection.ipynb 8\n",
      "codellama ../test_cases/tiled_image_processing.ipynb 8\n",
      "codellama ../test_cases/transpose_image_axes.ipynb 8\n",
      "codellama ../test_cases/t_test.ipynb 8\n",
      "codellama ../test_cases/workflow_batch_process_folder_count_labels.ipynb 8\n",
      "codellama ../test_cases/workflow_batch_process_folder_measure_intensity.ipynb 8\n",
      "codellama ../test_cases/workflow_segmentation_counting.ipynb 8\n",
      "codellama ../test_cases/workflow_segmentation_measurement_summary.ipynb 8\n",
      "codellama ../test_cases/workflow_segment_measure_umap.ipynb 8\n",
      "codellama ../test_cases/workflow_watershed_segmentation_correction_measurement.ipynb 8\n",
      "codellama ../test_cases/apply_otsu_threshold_and_count_postiive_pixels.ipynb 9\n",
      "codellama ../test_cases/binary_closing.ipynb 9\n",
      "codellama ../test_cases/binary_skeleton.ipynb 9\n",
      "codellama ../test_cases/bland_altman.ipynb 9\n",
      "codellama ../test_cases/combine_columns_of_tables.ipynb 9\n",
      "codellama ../test_cases/convex_hull_measure_area.ipynb 9\n",
      "codellama ../test_cases/convolve_images.ipynb 9\n",
      "codellama ../test_cases/count_number_of_touching_neighbors.ipynb 9\n",
      "codellama ../test_cases/count_objects_over_time.ipynb 9\n",
      "codellama ../test_cases/count_overlapping_regions.ipynb 9\n",
      "codellama ../test_cases/create_umap.ipynb 9\n",
      "codellama ../test_cases/crop_quarter_image.ipynb 9\n",
      "codellama ../test_cases/deconvolve_image.ipynb 9\n",
      "codellama ../test_cases/detect_edges.ipynb 9\n",
      "codellama ../test_cases/expand_labels_without_overlap.ipynb 9\n",
      "codellama ../test_cases/extract_surface_measure_area.ipynb 9\n",
      "codellama ../test_cases/fit_circle.ipynb 9\n",
      "codellama ../test_cases/label_binary_image_and_count_labels.ipynb 9\n",
      "codellama ../test_cases/label_sequentially.ipynb 9\n",
      "codellama ../test_cases/list_image_files_in_folder.ipynb 9\n",
      "codellama ../test_cases/map_pixel_count_of_labels.ipynb 9\n",
      "codellama ../test_cases/mask_image.ipynb 9\n",
      "codellama ../test_cases/maximum_intensity_projection.ipynb 9\n",
      "codellama ../test_cases/mean_squared_error.ipynb 9\n",
      "codellama ../test_cases/mean_std_column.ipynb 9\n",
      "codellama ../test_cases/measure_aspect_ratio_of_regions.ipynb 9\n",
      "codellama ../test_cases/measure_intensity_of_labels.ipynb 9\n",
      "codellama ../test_cases/measure_intensity_over_time.ipynb 9\n",
      "codellama ../test_cases/measure_mean_image_intensity.ipynb 9\n",
      "codellama ../test_cases/measure_pixel_count_of_labels.ipynb 9\n",
      "codellama ../test_cases/measure_properties_of_regions.ipynb 9\n",
      "codellama ../test_cases/open_image_read_voxel_size.ipynb 9\n",
      "codellama ../test_cases/open_image_return_dimensions.ipynb 9\n",
      "codellama ../test_cases/open_nifti_image.ipynb 9\n",
      "codellama ../test_cases/open_zarr.ipynb 9\n",
      "codellama ../test_cases/pair_wise_correlation_matrix.ipynb 9\n",
      "codellama ../test_cases/radial_intensity_profile.ipynb 9\n",
      "codellama ../test_cases/region_growing_segmentation.ipynb 9\n",
      "codellama ../test_cases/remove_labels_on_edges.ipynb 9\n",
      "codellama ../test_cases/remove_noise_edge_preserving.ipynb 9\n",
      "codellama ../test_cases/remove_small_labels.ipynb 9\n",
      "codellama ../test_cases/return_hello_world.ipynb 9\n",
      "codellama ../test_cases/rgb_to_grey_image_transform.ipynb 9\n",
      "codellama ../test_cases/rotate_image_by_90_degrees.ipynb 9\n",
      "codellama ../test_cases/subsample_image.ipynb 9\n",
      "codellama ../test_cases/subtract_background_tophat.ipynb 9\n",
      "codellama ../test_cases/sum_images.ipynb 9\n",
      "codellama ../test_cases/sum_intensity_projection.ipynb 9\n",
      "codellama ../test_cases/tiled_image_processing.ipynb 9\n",
      "codellama ../test_cases/transpose_image_axes.ipynb 9\n",
      "codellama ../test_cases/t_test.ipynb 9\n",
      "codellama ../test_cases/workflow_batch_process_folder_count_labels.ipynb 9\n",
      "codellama ../test_cases/workflow_batch_process_folder_measure_intensity.ipynb 9\n",
      "codellama ../test_cases/workflow_segmentation_counting.ipynb 9\n",
      "codellama ../test_cases/workflow_segmentation_measurement_summary.ipynb 9\n",
      "codellama ../test_cases/workflow_segment_measure_umap.ipynb 9\n",
      "codellama ../test_cases/workflow_watershed_segmentation_correction_measurement.ipynb 9\n",
      "gemini-pro ../test_cases/apply_otsu_threshold_and_count_postiive_pixels.ipynb 0\n",
      "gemini-pro ../test_cases/binary_closing.ipynb 0\n",
      "gemini-pro ../test_cases/binary_skeleton.ipynb 0\n",
      "gemini-pro ../test_cases/bland_altman.ipynb 0\n",
      "gemini-pro ../test_cases/combine_columns_of_tables.ipynb 0\n",
      "gemini-pro ../test_cases/convex_hull_measure_area.ipynb 0\n",
      "gemini-pro ../test_cases/convolve_images.ipynb 0\n",
      "gemini-pro ../test_cases/count_number_of_touching_neighbors.ipynb 0\n",
      "gemini-pro ../test_cases/count_objects_over_time.ipynb 0\n",
      "gemini-pro ../test_cases/count_overlapping_regions.ipynb 0\n",
      "gemini-pro ../test_cases/create_umap.ipynb 0\n",
      "gemini-pro ../test_cases/crop_quarter_image.ipynb 0\n",
      "gemini-pro ../test_cases/deconvolve_image.ipynb 0\n",
      "gemini-pro ../test_cases/detect_edges.ipynb 0\n",
      "gemini-pro ../test_cases/expand_labels_without_overlap.ipynb 0\n",
      "gemini-pro ../test_cases/extract_surface_measure_area.ipynb 0\n",
      "gemini-pro ../test_cases/fit_circle.ipynb 0\n",
      "gemini-pro ../test_cases/label_binary_image_and_count_labels.ipynb 0\n",
      "gemini-pro ../test_cases/label_sequentially.ipynb 0\n",
      "gemini-pro ../test_cases/list_image_files_in_folder.ipynb 0\n",
      "gemini-pro ../test_cases/map_pixel_count_of_labels.ipynb 0\n",
      "gemini-pro ../test_cases/mask_image.ipynb 0\n",
      "gemini-pro ../test_cases/maximum_intensity_projection.ipynb 0\n",
      "gemini-pro ../test_cases/mean_squared_error.ipynb 0\n",
      "gemini-pro ../test_cases/mean_std_column.ipynb 0\n",
      "gemini-pro ../test_cases/measure_aspect_ratio_of_regions.ipynb 0\n",
      "gemini-pro ../test_cases/measure_intensity_of_labels.ipynb 0\n",
      "gemini-pro ../test_cases/measure_intensity_over_time.ipynb 0\n",
      "gemini-pro ../test_cases/measure_mean_image_intensity.ipynb 0\n",
      "gemini-pro ../test_cases/measure_pixel_count_of_labels.ipynb 0\n",
      "gemini-pro ../test_cases/measure_properties_of_regions.ipynb 0\n",
      "gemini-pro ../test_cases/open_image_read_voxel_size.ipynb 0\n",
      "gemini-pro ../test_cases/open_image_return_dimensions.ipynb 0\n",
      "gemini-pro ../test_cases/open_nifti_image.ipynb 0\n",
      "gemini-pro ../test_cases/open_zarr.ipynb 0\n",
      "gemini-pro ../test_cases/pair_wise_correlation_matrix.ipynb 0\n",
      "gemini-pro ../test_cases/radial_intensity_profile.ipynb 0\n",
      "gemini-pro ../test_cases/region_growing_segmentation.ipynb 0\n",
      "gemini-pro ../test_cases/remove_labels_on_edges.ipynb 0\n",
      "gemini-pro ../test_cases/remove_noise_edge_preserving.ipynb 0\n",
      "gemini-pro ../test_cases/remove_small_labels.ipynb 0\n",
      "gemini-pro ../test_cases/return_hello_world.ipynb 0\n",
      "gemini-pro ../test_cases/rgb_to_grey_image_transform.ipynb 0\n",
      "gemini-pro ../test_cases/rotate_image_by_90_degrees.ipynb 0\n",
      "gemini-pro ../test_cases/subsample_image.ipynb 0\n",
      "gemini-pro ../test_cases/subtract_background_tophat.ipynb 0\n",
      "gemini-pro ../test_cases/sum_images.ipynb 0\n",
      "gemini-pro ../test_cases/sum_intensity_projection.ipynb 0\n",
      "gemini-pro ../test_cases/tiled_image_processing.ipynb 0\n",
      "gemini-pro ../test_cases/transpose_image_axes.ipynb 0\n",
      "gemini-pro ../test_cases/t_test.ipynb 0\n",
      "gemini-pro ../test_cases/workflow_batch_process_folder_count_labels.ipynb 0\n",
      "gemini-pro ../test_cases/workflow_batch_process_folder_measure_intensity.ipynb 0\n",
      "gemini-pro ../test_cases/workflow_segmentation_counting.ipynb 0\n",
      "gemini-pro ../test_cases/workflow_segmentation_measurement_summary.ipynb 0\n",
      "gemini-pro ../test_cases/workflow_segment_measure_umap.ipynb 0\n",
      "gemini-pro ../test_cases/workflow_watershed_segmentation_correction_measurement.ipynb 0\n",
      "gemini-pro ../test_cases/apply_otsu_threshold_and_count_postiive_pixels.ipynb 1\n",
      "gemini-pro ../test_cases/binary_closing.ipynb 1\n",
      "gemini-pro ../test_cases/binary_skeleton.ipynb 1\n",
      "gemini-pro ../test_cases/bland_altman.ipynb 1\n",
      "gemini-pro ../test_cases/combine_columns_of_tables.ipynb 1\n",
      "gemini-pro ../test_cases/convex_hull_measure_area.ipynb 1\n",
      "gemini-pro ../test_cases/convolve_images.ipynb 1\n",
      "gemini-pro ../test_cases/count_number_of_touching_neighbors.ipynb 1\n",
      "gemini-pro ../test_cases/count_objects_over_time.ipynb 1\n",
      "gemini-pro ../test_cases/count_overlapping_regions.ipynb 1\n",
      "gemini-pro ../test_cases/create_umap.ipynb 1\n",
      "gemini-pro ../test_cases/crop_quarter_image.ipynb 1\n",
      "gemini-pro ../test_cases/deconvolve_image.ipynb 1\n",
      "gemini-pro ../test_cases/detect_edges.ipynb 1\n",
      "gemini-pro ../test_cases/expand_labels_without_overlap.ipynb 1\n",
      "gemini-pro ../test_cases/extract_surface_measure_area.ipynb 1\n",
      "gemini-pro ../test_cases/fit_circle.ipynb 1\n",
      "gemini-pro ../test_cases/label_binary_image_and_count_labels.ipynb 1\n",
      "gemini-pro ../test_cases/label_sequentially.ipynb 1\n",
      "gemini-pro ../test_cases/list_image_files_in_folder.ipynb 1\n",
      "gemini-pro ../test_cases/map_pixel_count_of_labels.ipynb 1\n",
      "gemini-pro ../test_cases/mask_image.ipynb 1\n",
      "gemini-pro ../test_cases/maximum_intensity_projection.ipynb 1\n",
      "gemini-pro ../test_cases/mean_squared_error.ipynb 1\n",
      "gemini-pro ../test_cases/mean_std_column.ipynb 1\n",
      "gemini-pro ../test_cases/measure_aspect_ratio_of_regions.ipynb 1\n",
      "gemini-pro ../test_cases/measure_intensity_of_labels.ipynb 1\n",
      "gemini-pro ../test_cases/measure_intensity_over_time.ipynb 1\n",
      "gemini-pro ../test_cases/measure_mean_image_intensity.ipynb 1\n",
      "gemini-pro ../test_cases/measure_pixel_count_of_labels.ipynb 1\n",
      "gemini-pro ../test_cases/measure_properties_of_regions.ipynb 1\n",
      "gemini-pro ../test_cases/open_image_read_voxel_size.ipynb 1\n",
      "gemini-pro ../test_cases/open_image_return_dimensions.ipynb 1\n",
      "gemini-pro ../test_cases/open_nifti_image.ipynb 1\n",
      "gemini-pro ../test_cases/open_zarr.ipynb 1\n",
      "gemini-pro ../test_cases/pair_wise_correlation_matrix.ipynb 1\n",
      "gemini-pro ../test_cases/radial_intensity_profile.ipynb 1\n",
      "gemini-pro ../test_cases/region_growing_segmentation.ipynb 1\n",
      "gemini-pro ../test_cases/remove_labels_on_edges.ipynb 1\n",
      "gemini-pro ../test_cases/remove_noise_edge_preserving.ipynb 1\n",
      "gemini-pro ../test_cases/remove_small_labels.ipynb 1\n",
      "gemini-pro ../test_cases/return_hello_world.ipynb 1\n",
      "gemini-pro ../test_cases/rgb_to_grey_image_transform.ipynb 1\n",
      "gemini-pro ../test_cases/rotate_image_by_90_degrees.ipynb 1\n",
      "gemini-pro ../test_cases/subsample_image.ipynb 1\n",
      "gemini-pro ../test_cases/subtract_background_tophat.ipynb 1\n",
      "gemini-pro ../test_cases/sum_images.ipynb 1\n",
      "gemini-pro ../test_cases/sum_intensity_projection.ipynb 1\n",
      "gemini-pro ../test_cases/tiled_image_processing.ipynb 1\n",
      "gemini-pro ../test_cases/transpose_image_axes.ipynb 1\n",
      "gemini-pro ../test_cases/t_test.ipynb 1\n",
      "gemini-pro ../test_cases/workflow_batch_process_folder_count_labels.ipynb 1\n",
      "gemini-pro ../test_cases/workflow_batch_process_folder_measure_intensity.ipynb 1\n",
      "gemini-pro ../test_cases/workflow_segmentation_counting.ipynb 1\n",
      "gemini-pro ../test_cases/workflow_segmentation_measurement_summary.ipynb 1\n",
      "gemini-pro ../test_cases/workflow_segment_measure_umap.ipynb 1\n",
      "gemini-pro ../test_cases/workflow_watershed_segmentation_correction_measurement.ipynb 1\n",
      "gemini-pro ../test_cases/apply_otsu_threshold_and_count_postiive_pixels.ipynb 2\n",
      "gemini-pro ../test_cases/binary_closing.ipynb 2\n",
      "gemini-pro ../test_cases/binary_skeleton.ipynb 2\n",
      "gemini-pro ../test_cases/bland_altman.ipynb 2\n",
      "gemini-pro ../test_cases/combine_columns_of_tables.ipynb 2\n",
      "gemini-pro ../test_cases/convex_hull_measure_area.ipynb 2\n",
      "gemini-pro ../test_cases/convolve_images.ipynb 2\n",
      "gemini-pro ../test_cases/count_number_of_touching_neighbors.ipynb 2\n",
      "gemini-pro ../test_cases/count_objects_over_time.ipynb 2\n",
      "gemini-pro ../test_cases/count_overlapping_regions.ipynb 2\n",
      "gemini-pro ../test_cases/create_umap.ipynb 2\n",
      "gemini-pro ../test_cases/crop_quarter_image.ipynb 2\n",
      "gemini-pro ../test_cases/deconvolve_image.ipynb 2\n",
      "gemini-pro ../test_cases/detect_edges.ipynb 2\n",
      "gemini-pro ../test_cases/expand_labels_without_overlap.ipynb 2\n",
      "gemini-pro ../test_cases/extract_surface_measure_area.ipynb 2\n",
      "gemini-pro ../test_cases/fit_circle.ipynb 2\n",
      "gemini-pro ../test_cases/label_binary_image_and_count_labels.ipynb 2\n",
      "gemini-pro ../test_cases/label_sequentially.ipynb 2\n",
      "gemini-pro ../test_cases/list_image_files_in_folder.ipynb 2\n",
      "gemini-pro ../test_cases/map_pixel_count_of_labels.ipynb 2\n",
      "gemini-pro ../test_cases/mask_image.ipynb 2\n",
      "gemini-pro ../test_cases/maximum_intensity_projection.ipynb 2\n",
      "gemini-pro ../test_cases/mean_squared_error.ipynb 2\n",
      "gemini-pro ../test_cases/mean_std_column.ipynb 2\n",
      "gemini-pro ../test_cases/measure_aspect_ratio_of_regions.ipynb 2\n",
      "gemini-pro ../test_cases/measure_intensity_of_labels.ipynb 2\n",
      "gemini-pro ../test_cases/measure_intensity_over_time.ipynb 2\n",
      "gemini-pro ../test_cases/measure_mean_image_intensity.ipynb 2\n",
      "gemini-pro ../test_cases/measure_pixel_count_of_labels.ipynb 2\n",
      "gemini-pro ../test_cases/measure_properties_of_regions.ipynb 2\n",
      "gemini-pro ../test_cases/open_image_read_voxel_size.ipynb 2\n",
      "gemini-pro ../test_cases/open_image_return_dimensions.ipynb 2\n",
      "gemini-pro ../test_cases/open_nifti_image.ipynb 2\n",
      "gemini-pro ../test_cases/open_zarr.ipynb 2\n",
      "gemini-pro ../test_cases/pair_wise_correlation_matrix.ipynb 2\n",
      "gemini-pro ../test_cases/radial_intensity_profile.ipynb 2\n",
      "gemini-pro ../test_cases/region_growing_segmentation.ipynb 2\n",
      "gemini-pro ../test_cases/remove_labels_on_edges.ipynb 2\n",
      "gemini-pro ../test_cases/remove_noise_edge_preserving.ipynb 2\n",
      "gemini-pro ../test_cases/remove_small_labels.ipynb 2\n",
      "gemini-pro ../test_cases/return_hello_world.ipynb 2\n",
      "gemini-pro ../test_cases/rgb_to_grey_image_transform.ipynb 2\n",
      "gemini-pro ../test_cases/rotate_image_by_90_degrees.ipynb 2\n",
      "gemini-pro ../test_cases/subsample_image.ipynb 2\n",
      "gemini-pro ../test_cases/subtract_background_tophat.ipynb 2\n",
      "gemini-pro ../test_cases/sum_images.ipynb 2\n",
      "gemini-pro ../test_cases/sum_intensity_projection.ipynb 2\n",
      "gemini-pro ../test_cases/tiled_image_processing.ipynb 2\n",
      "gemini-pro ../test_cases/transpose_image_axes.ipynb 2\n",
      "gemini-pro ../test_cases/t_test.ipynb 2\n",
      "gemini-pro ../test_cases/workflow_batch_process_folder_count_labels.ipynb 2\n",
      "gemini-pro ../test_cases/workflow_batch_process_folder_measure_intensity.ipynb 2\n",
      "gemini-pro ../test_cases/workflow_segmentation_counting.ipynb 2\n",
      "gemini-pro ../test_cases/workflow_segmentation_measurement_summary.ipynb 2\n",
      "gemini-pro ../test_cases/workflow_segment_measure_umap.ipynb 2\n",
      "gemini-pro ../test_cases/workflow_watershed_segmentation_correction_measurement.ipynb 2\n",
      "gemini-pro ../test_cases/apply_otsu_threshold_and_count_postiive_pixels.ipynb 3\n",
      "gemini-pro ../test_cases/binary_closing.ipynb 3\n",
      "gemini-pro ../test_cases/binary_skeleton.ipynb 3\n",
      "gemini-pro ../test_cases/bland_altman.ipynb 3\n",
      "gemini-pro ../test_cases/combine_columns_of_tables.ipynb 3\n",
      "gemini-pro ../test_cases/convex_hull_measure_area.ipynb 3\n",
      "gemini-pro ../test_cases/convolve_images.ipynb 3\n",
      "gemini-pro ../test_cases/count_number_of_touching_neighbors.ipynb 3\n",
      "gemini-pro ../test_cases/count_objects_over_time.ipynb 3\n",
      "gemini-pro ../test_cases/count_overlapping_regions.ipynb 3\n",
      "gemini-pro ../test_cases/create_umap.ipynb 3\n",
      "gemini-pro ../test_cases/crop_quarter_image.ipynb 3\n",
      "gemini-pro ../test_cases/deconvolve_image.ipynb 3\n",
      "gemini-pro ../test_cases/detect_edges.ipynb 3\n",
      "gemini-pro ../test_cases/expand_labels_without_overlap.ipynb 3\n",
      "gemini-pro ../test_cases/extract_surface_measure_area.ipynb 3\n",
      "gemini-pro ../test_cases/fit_circle.ipynb 3\n",
      "gemini-pro ../test_cases/label_binary_image_and_count_labels.ipynb 3\n",
      "gemini-pro ../test_cases/label_sequentially.ipynb 3\n",
      "gemini-pro ../test_cases/list_image_files_in_folder.ipynb 3\n",
      "gemini-pro ../test_cases/map_pixel_count_of_labels.ipynb 3\n",
      "gemini-pro ../test_cases/mask_image.ipynb 3\n",
      "gemini-pro ../test_cases/maximum_intensity_projection.ipynb 3\n",
      "gemini-pro ../test_cases/mean_squared_error.ipynb 3\n",
      "gemini-pro ../test_cases/mean_std_column.ipynb 3\n",
      "gemini-pro ../test_cases/measure_aspect_ratio_of_regions.ipynb 3\n",
      "gemini-pro ../test_cases/measure_intensity_of_labels.ipynb 3\n",
      "gemini-pro ../test_cases/measure_intensity_over_time.ipynb 3\n",
      "gemini-pro ../test_cases/measure_mean_image_intensity.ipynb 3\n",
      "gemini-pro ../test_cases/measure_pixel_count_of_labels.ipynb 3\n",
      "gemini-pro ../test_cases/measure_properties_of_regions.ipynb 3\n",
      "gemini-pro ../test_cases/open_image_read_voxel_size.ipynb 3\n",
      "gemini-pro ../test_cases/open_image_return_dimensions.ipynb 3\n",
      "gemini-pro ../test_cases/open_nifti_image.ipynb 3\n",
      "gemini-pro ../test_cases/open_zarr.ipynb 3\n",
      "gemini-pro ../test_cases/pair_wise_correlation_matrix.ipynb 3\n",
      "gemini-pro ../test_cases/radial_intensity_profile.ipynb 3\n",
      "gemini-pro ../test_cases/region_growing_segmentation.ipynb 3\n",
      "gemini-pro ../test_cases/remove_labels_on_edges.ipynb 3\n",
      "gemini-pro ../test_cases/remove_noise_edge_preserving.ipynb 3\n",
      "gemini-pro ../test_cases/remove_small_labels.ipynb 3\n",
      "gemini-pro ../test_cases/return_hello_world.ipynb 3\n",
      "gemini-pro ../test_cases/rgb_to_grey_image_transform.ipynb 3\n",
      "gemini-pro ../test_cases/rotate_image_by_90_degrees.ipynb 3\n",
      "gemini-pro ../test_cases/subsample_image.ipynb 3\n",
      "gemini-pro ../test_cases/subtract_background_tophat.ipynb 3\n",
      "gemini-pro ../test_cases/sum_images.ipynb 3\n",
      "gemini-pro ../test_cases/sum_intensity_projection.ipynb 3\n",
      "gemini-pro ../test_cases/tiled_image_processing.ipynb 3\n",
      "gemini-pro ../test_cases/transpose_image_axes.ipynb 3\n",
      "gemini-pro ../test_cases/t_test.ipynb 3\n",
      "gemini-pro ../test_cases/workflow_batch_process_folder_count_labels.ipynb 3\n",
      "gemini-pro ../test_cases/workflow_batch_process_folder_measure_intensity.ipynb 3\n",
      "gemini-pro ../test_cases/workflow_segmentation_counting.ipynb 3\n",
      "gemini-pro ../test_cases/workflow_segmentation_measurement_summary.ipynb 3\n",
      "gemini-pro ../test_cases/workflow_segment_measure_umap.ipynb 3\n",
      "gemini-pro ../test_cases/workflow_watershed_segmentation_correction_measurement.ipynb 3\n",
      "gemini-pro ../test_cases/apply_otsu_threshold_and_count_postiive_pixels.ipynb 4\n",
      "gemini-pro ../test_cases/binary_closing.ipynb 4\n",
      "gemini-pro ../test_cases/binary_skeleton.ipynb 4\n",
      "gemini-pro ../test_cases/bland_altman.ipynb 4\n",
      "gemini-pro ../test_cases/combine_columns_of_tables.ipynb 4\n",
      "gemini-pro ../test_cases/convex_hull_measure_area.ipynb 4\n",
      "gemini-pro ../test_cases/convolve_images.ipynb 4\n",
      "gemini-pro ../test_cases/count_number_of_touching_neighbors.ipynb 4\n",
      "gemini-pro ../test_cases/count_objects_over_time.ipynb 4\n",
      "gemini-pro ../test_cases/count_overlapping_regions.ipynb 4\n",
      "gemini-pro ../test_cases/create_umap.ipynb 4\n",
      "gemini-pro ../test_cases/crop_quarter_image.ipynb 4\n",
      "gemini-pro ../test_cases/deconvolve_image.ipynb 4\n",
      "gemini-pro ../test_cases/detect_edges.ipynb 4\n",
      "gemini-pro ../test_cases/expand_labels_without_overlap.ipynb 4\n",
      "gemini-pro ../test_cases/extract_surface_measure_area.ipynb 4\n",
      "gemini-pro ../test_cases/fit_circle.ipynb 4\n",
      "gemini-pro ../test_cases/label_binary_image_and_count_labels.ipynb 4\n",
      "gemini-pro ../test_cases/label_sequentially.ipynb 4\n",
      "gemini-pro ../test_cases/list_image_files_in_folder.ipynb 4\n",
      "gemini-pro ../test_cases/map_pixel_count_of_labels.ipynb 4\n",
      "gemini-pro ../test_cases/mask_image.ipynb 4\n",
      "gemini-pro ../test_cases/maximum_intensity_projection.ipynb 4\n",
      "gemini-pro ../test_cases/mean_squared_error.ipynb 4\n",
      "gemini-pro ../test_cases/mean_std_column.ipynb 4\n",
      "gemini-pro ../test_cases/measure_aspect_ratio_of_regions.ipynb 4\n",
      "gemini-pro ../test_cases/measure_intensity_of_labels.ipynb 4\n",
      "gemini-pro ../test_cases/measure_intensity_over_time.ipynb 4\n",
      "gemini-pro ../test_cases/measure_mean_image_intensity.ipynb 4\n",
      "gemini-pro ../test_cases/measure_pixel_count_of_labels.ipynb 4\n",
      "gemini-pro ../test_cases/measure_properties_of_regions.ipynb 4\n",
      "gemini-pro ../test_cases/open_image_read_voxel_size.ipynb 4\n",
      "gemini-pro ../test_cases/open_image_return_dimensions.ipynb 4\n",
      "gemini-pro ../test_cases/open_nifti_image.ipynb 4\n",
      "gemini-pro ../test_cases/open_zarr.ipynb 4\n",
      "gemini-pro ../test_cases/pair_wise_correlation_matrix.ipynb 4\n",
      "gemini-pro ../test_cases/radial_intensity_profile.ipynb 4\n",
      "gemini-pro ../test_cases/region_growing_segmentation.ipynb 4\n",
      "gemini-pro ../test_cases/remove_labels_on_edges.ipynb 4\n",
      "gemini-pro ../test_cases/remove_noise_edge_preserving.ipynb 4\n",
      "gemini-pro ../test_cases/remove_small_labels.ipynb 4\n",
      "gemini-pro ../test_cases/return_hello_world.ipynb 4\n",
      "gemini-pro ../test_cases/rgb_to_grey_image_transform.ipynb 4\n",
      "gemini-pro ../test_cases/rotate_image_by_90_degrees.ipynb 4\n",
      "gemini-pro ../test_cases/subsample_image.ipynb 4\n",
      "gemini-pro ../test_cases/subtract_background_tophat.ipynb 4\n",
      "gemini-pro ../test_cases/sum_images.ipynb 4\n",
      "gemini-pro ../test_cases/sum_intensity_projection.ipynb 4\n",
      "gemini-pro ../test_cases/tiled_image_processing.ipynb 4\n",
      "gemini-pro ../test_cases/transpose_image_axes.ipynb 4\n",
      "gemini-pro ../test_cases/t_test.ipynb 4\n",
      "gemini-pro ../test_cases/workflow_batch_process_folder_count_labels.ipynb 4\n",
      "gemini-pro ../test_cases/workflow_batch_process_folder_measure_intensity.ipynb 4\n",
      "gemini-pro ../test_cases/workflow_segmentation_counting.ipynb 4\n",
      "gemini-pro ../test_cases/workflow_segmentation_measurement_summary.ipynb 4\n",
      "gemini-pro ../test_cases/workflow_segment_measure_umap.ipynb 4\n",
      "gemini-pro ../test_cases/workflow_watershed_segmentation_correction_measurement.ipynb 4\n",
      "gemini-pro ../test_cases/apply_otsu_threshold_and_count_postiive_pixels.ipynb 5\n",
      "gemini-pro ../test_cases/binary_closing.ipynb 5\n",
      "gemini-pro ../test_cases/binary_skeleton.ipynb 5\n",
      "gemini-pro ../test_cases/bland_altman.ipynb 5\n",
      "gemini-pro ../test_cases/combine_columns_of_tables.ipynb 5\n",
      "gemini-pro ../test_cases/convex_hull_measure_area.ipynb 5\n",
      "gemini-pro ../test_cases/convolve_images.ipynb 5\n",
      "gemini-pro ../test_cases/count_number_of_touching_neighbors.ipynb 5\n",
      "gemini-pro ../test_cases/count_objects_over_time.ipynb 5\n",
      "gemini-pro ../test_cases/count_overlapping_regions.ipynb 5\n",
      "gemini-pro ../test_cases/create_umap.ipynb 5\n",
      "gemini-pro ../test_cases/crop_quarter_image.ipynb 5\n",
      "gemini-pro ../test_cases/deconvolve_image.ipynb 5\n",
      "gemini-pro ../test_cases/detect_edges.ipynb 5\n",
      "gemini-pro ../test_cases/expand_labels_without_overlap.ipynb 5\n",
      "gemini-pro ../test_cases/extract_surface_measure_area.ipynb 5\n",
      "gemini-pro ../test_cases/fit_circle.ipynb 5\n",
      "gemini-pro ../test_cases/label_binary_image_and_count_labels.ipynb 5\n",
      "gemini-pro ../test_cases/label_sequentially.ipynb 5\n",
      "gemini-pro ../test_cases/list_image_files_in_folder.ipynb 5\n",
      "gemini-pro ../test_cases/map_pixel_count_of_labels.ipynb 5\n",
      "gemini-pro ../test_cases/mask_image.ipynb 5\n",
      "gemini-pro ../test_cases/maximum_intensity_projection.ipynb 5\n",
      "gemini-pro ../test_cases/mean_squared_error.ipynb 5\n",
      "gemini-pro ../test_cases/mean_std_column.ipynb 5\n",
      "gemini-pro ../test_cases/measure_aspect_ratio_of_regions.ipynb 5\n",
      "gemini-pro ../test_cases/measure_intensity_of_labels.ipynb 5\n",
      "gemini-pro ../test_cases/measure_intensity_over_time.ipynb 5\n",
      "gemini-pro ../test_cases/measure_mean_image_intensity.ipynb 5\n",
      "gemini-pro ../test_cases/measure_pixel_count_of_labels.ipynb 5\n",
      "gemini-pro ../test_cases/measure_properties_of_regions.ipynb 5\n",
      "gemini-pro ../test_cases/open_image_read_voxel_size.ipynb 5\n",
      "gemini-pro ../test_cases/open_image_return_dimensions.ipynb 5\n",
      "gemini-pro ../test_cases/open_nifti_image.ipynb 5\n",
      "gemini-pro ../test_cases/open_zarr.ipynb 5\n",
      "gemini-pro ../test_cases/pair_wise_correlation_matrix.ipynb 5\n",
      "gemini-pro ../test_cases/radial_intensity_profile.ipynb 5\n",
      "gemini-pro ../test_cases/region_growing_segmentation.ipynb 5\n",
      "gemini-pro ../test_cases/remove_labels_on_edges.ipynb 5\n",
      "gemini-pro ../test_cases/remove_noise_edge_preserving.ipynb 5\n",
      "gemini-pro ../test_cases/remove_small_labels.ipynb 5\n",
      "gemini-pro ../test_cases/return_hello_world.ipynb 5\n",
      "gemini-pro ../test_cases/rgb_to_grey_image_transform.ipynb 5\n",
      "gemini-pro ../test_cases/rotate_image_by_90_degrees.ipynb 5\n",
      "gemini-pro ../test_cases/subsample_image.ipynb 5\n",
      "gemini-pro ../test_cases/subtract_background_tophat.ipynb 5\n",
      "gemini-pro ../test_cases/sum_images.ipynb 5\n",
      "gemini-pro ../test_cases/sum_intensity_projection.ipynb 5\n",
      "gemini-pro ../test_cases/tiled_image_processing.ipynb 5\n",
      "gemini-pro ../test_cases/transpose_image_axes.ipynb 5\n",
      "gemini-pro ../test_cases/t_test.ipynb 5\n",
      "gemini-pro ../test_cases/workflow_batch_process_folder_count_labels.ipynb 5\n",
      "gemini-pro ../test_cases/workflow_batch_process_folder_measure_intensity.ipynb 5\n",
      "gemini-pro ../test_cases/workflow_segmentation_counting.ipynb 5\n",
      "gemini-pro ../test_cases/workflow_segmentation_measurement_summary.ipynb 5\n",
      "gemini-pro ../test_cases/workflow_segment_measure_umap.ipynb 5\n",
      "gemini-pro ../test_cases/workflow_watershed_segmentation_correction_measurement.ipynb 5\n",
      "gemini-pro ../test_cases/apply_otsu_threshold_and_count_postiive_pixels.ipynb 6\n",
      "gemini-pro ../test_cases/binary_closing.ipynb 6\n",
      "gemini-pro ../test_cases/binary_skeleton.ipynb 6\n",
      "gemini-pro ../test_cases/bland_altman.ipynb 6\n",
      "gemini-pro ../test_cases/combine_columns_of_tables.ipynb 6\n",
      "gemini-pro ../test_cases/convex_hull_measure_area.ipynb 6\n",
      "gemini-pro ../test_cases/convolve_images.ipynb 6\n",
      "gemini-pro ../test_cases/count_number_of_touching_neighbors.ipynb 6\n",
      "gemini-pro ../test_cases/count_objects_over_time.ipynb 6\n",
      "gemini-pro ../test_cases/count_overlapping_regions.ipynb 6\n",
      "gemini-pro ../test_cases/create_umap.ipynb 6\n",
      "gemini-pro ../test_cases/crop_quarter_image.ipynb 6\n",
      "gemini-pro ../test_cases/deconvolve_image.ipynb 6\n",
      "gemini-pro ../test_cases/detect_edges.ipynb 6\n",
      "gemini-pro ../test_cases/expand_labels_without_overlap.ipynb 6\n",
      "gemini-pro ../test_cases/extract_surface_measure_area.ipynb 6\n",
      "gemini-pro ../test_cases/fit_circle.ipynb 6\n",
      "gemini-pro ../test_cases/label_binary_image_and_count_labels.ipynb 6\n",
      "gemini-pro ../test_cases/label_sequentially.ipynb 6\n",
      "gemini-pro ../test_cases/list_image_files_in_folder.ipynb 6\n",
      "gemini-pro ../test_cases/map_pixel_count_of_labels.ipynb 6\n",
      "gemini-pro ../test_cases/mask_image.ipynb 6\n",
      "gemini-pro ../test_cases/maximum_intensity_projection.ipynb 6\n",
      "gemini-pro ../test_cases/mean_squared_error.ipynb 6\n",
      "gemini-pro ../test_cases/mean_std_column.ipynb 6\n",
      "gemini-pro ../test_cases/measure_aspect_ratio_of_regions.ipynb 6\n",
      "gemini-pro ../test_cases/measure_intensity_of_labels.ipynb 6\n",
      "gemini-pro ../test_cases/measure_intensity_over_time.ipynb 6\n",
      "gemini-pro ../test_cases/measure_mean_image_intensity.ipynb 6\n",
      "gemini-pro ../test_cases/measure_pixel_count_of_labels.ipynb 6\n",
      "gemini-pro ../test_cases/measure_properties_of_regions.ipynb 6\n",
      "gemini-pro ../test_cases/open_image_read_voxel_size.ipynb 6\n",
      "gemini-pro ../test_cases/open_image_return_dimensions.ipynb 6\n",
      "gemini-pro ../test_cases/open_nifti_image.ipynb 6\n",
      "gemini-pro ../test_cases/open_zarr.ipynb 6\n",
      "gemini-pro ../test_cases/pair_wise_correlation_matrix.ipynb 6\n",
      "gemini-pro ../test_cases/radial_intensity_profile.ipynb 6\n",
      "gemini-pro ../test_cases/region_growing_segmentation.ipynb 6\n",
      "gemini-pro ../test_cases/remove_labels_on_edges.ipynb 6\n",
      "gemini-pro ../test_cases/remove_noise_edge_preserving.ipynb 6\n",
      "gemini-pro ../test_cases/remove_small_labels.ipynb 6\n",
      "gemini-pro ../test_cases/return_hello_world.ipynb 6\n",
      "gemini-pro ../test_cases/rgb_to_grey_image_transform.ipynb 6\n",
      "gemini-pro ../test_cases/rotate_image_by_90_degrees.ipynb 6\n",
      "gemini-pro ../test_cases/subsample_image.ipynb 6\n",
      "gemini-pro ../test_cases/subtract_background_tophat.ipynb 6\n",
      "gemini-pro ../test_cases/sum_images.ipynb 6\n",
      "gemini-pro ../test_cases/sum_intensity_projection.ipynb 6\n",
      "gemini-pro ../test_cases/tiled_image_processing.ipynb 6\n",
      "gemini-pro ../test_cases/transpose_image_axes.ipynb 6\n",
      "gemini-pro ../test_cases/t_test.ipynb 6\n",
      "gemini-pro ../test_cases/workflow_batch_process_folder_count_labels.ipynb 6\n",
      "gemini-pro ../test_cases/workflow_batch_process_folder_measure_intensity.ipynb 6\n",
      "gemini-pro ../test_cases/workflow_segmentation_counting.ipynb 6\n",
      "gemini-pro ../test_cases/workflow_segmentation_measurement_summary.ipynb 6\n",
      "gemini-pro ../test_cases/workflow_segment_measure_umap.ipynb 6\n",
      "gemini-pro ../test_cases/workflow_watershed_segmentation_correction_measurement.ipynb 6\n",
      "gemini-pro ../test_cases/apply_otsu_threshold_and_count_postiive_pixels.ipynb 7\n",
      "gemini-pro ../test_cases/binary_closing.ipynb 7\n",
      "gemini-pro ../test_cases/binary_skeleton.ipynb 7\n",
      "gemini-pro ../test_cases/bland_altman.ipynb 7\n",
      "gemini-pro ../test_cases/combine_columns_of_tables.ipynb 7\n",
      "gemini-pro ../test_cases/convex_hull_measure_area.ipynb 7\n",
      "gemini-pro ../test_cases/convolve_images.ipynb 7\n",
      "gemini-pro ../test_cases/count_number_of_touching_neighbors.ipynb 7\n",
      "gemini-pro ../test_cases/count_objects_over_time.ipynb 7\n",
      "gemini-pro ../test_cases/count_overlapping_regions.ipynb 7\n",
      "gemini-pro ../test_cases/create_umap.ipynb 7\n",
      "gemini-pro ../test_cases/crop_quarter_image.ipynb 7\n",
      "gemini-pro ../test_cases/deconvolve_image.ipynb 7\n",
      "gemini-pro ../test_cases/detect_edges.ipynb 7\n",
      "gemini-pro ../test_cases/expand_labels_without_overlap.ipynb 7\n",
      "gemini-pro ../test_cases/extract_surface_measure_area.ipynb 7\n",
      "gemini-pro ../test_cases/fit_circle.ipynb 7\n",
      "gemini-pro ../test_cases/label_binary_image_and_count_labels.ipynb 7\n",
      "gemini-pro ../test_cases/label_sequentially.ipynb 7\n",
      "gemini-pro ../test_cases/list_image_files_in_folder.ipynb 7\n",
      "gemini-pro ../test_cases/map_pixel_count_of_labels.ipynb 7\n",
      "gemini-pro ../test_cases/mask_image.ipynb 7\n",
      "gemini-pro ../test_cases/maximum_intensity_projection.ipynb 7\n",
      "gemini-pro ../test_cases/mean_squared_error.ipynb 7\n",
      "gemini-pro ../test_cases/mean_std_column.ipynb 7\n",
      "gemini-pro ../test_cases/measure_aspect_ratio_of_regions.ipynb 7\n",
      "gemini-pro ../test_cases/measure_intensity_of_labels.ipynb 7\n",
      "gemini-pro ../test_cases/measure_intensity_over_time.ipynb 7\n",
      "gemini-pro ../test_cases/measure_mean_image_intensity.ipynb 7\n",
      "gemini-pro ../test_cases/measure_pixel_count_of_labels.ipynb 7\n",
      "gemini-pro ../test_cases/measure_properties_of_regions.ipynb 7\n",
      "gemini-pro ../test_cases/open_image_read_voxel_size.ipynb 7\n",
      "gemini-pro ../test_cases/open_image_return_dimensions.ipynb 7\n",
      "gemini-pro ../test_cases/open_nifti_image.ipynb 7\n",
      "gemini-pro ../test_cases/open_zarr.ipynb 7\n",
      "gemini-pro ../test_cases/pair_wise_correlation_matrix.ipynb 7\n",
      "gemini-pro ../test_cases/radial_intensity_profile.ipynb 7\n",
      "gemini-pro ../test_cases/region_growing_segmentation.ipynb 7\n",
      "gemini-pro ../test_cases/remove_labels_on_edges.ipynb 7\n",
      "gemini-pro ../test_cases/remove_noise_edge_preserving.ipynb 7\n",
      "gemini-pro ../test_cases/remove_small_labels.ipynb 7\n",
      "gemini-pro ../test_cases/return_hello_world.ipynb 7\n",
      "gemini-pro ../test_cases/rgb_to_grey_image_transform.ipynb 7\n",
      "gemini-pro ../test_cases/rotate_image_by_90_degrees.ipynb 7\n",
      "gemini-pro ../test_cases/subsample_image.ipynb 7\n",
      "gemini-pro ../test_cases/subtract_background_tophat.ipynb 7\n",
      "gemini-pro ../test_cases/sum_images.ipynb 7\n",
      "gemini-pro ../test_cases/sum_intensity_projection.ipynb 7\n",
      "gemini-pro ../test_cases/tiled_image_processing.ipynb 7\n",
      "gemini-pro ../test_cases/transpose_image_axes.ipynb 7\n",
      "gemini-pro ../test_cases/t_test.ipynb 7\n",
      "gemini-pro ../test_cases/workflow_batch_process_folder_count_labels.ipynb 7\n",
      "gemini-pro ../test_cases/workflow_batch_process_folder_measure_intensity.ipynb 7\n",
      "gemini-pro ../test_cases/workflow_segmentation_counting.ipynb 7\n",
      "gemini-pro ../test_cases/workflow_segmentation_measurement_summary.ipynb 7\n",
      "gemini-pro ../test_cases/workflow_segment_measure_umap.ipynb 7\n",
      "gemini-pro ../test_cases/workflow_watershed_segmentation_correction_measurement.ipynb 7\n",
      "gemini-pro ../test_cases/apply_otsu_threshold_and_count_postiive_pixels.ipynb 8\n",
      "gemini-pro ../test_cases/binary_closing.ipynb 8\n",
      "gemini-pro ../test_cases/binary_skeleton.ipynb 8\n",
      "gemini-pro ../test_cases/bland_altman.ipynb 8\n",
      "gemini-pro ../test_cases/combine_columns_of_tables.ipynb 8\n",
      "gemini-pro ../test_cases/convex_hull_measure_area.ipynb 8\n",
      "gemini-pro ../test_cases/convolve_images.ipynb 8\n",
      "gemini-pro ../test_cases/count_number_of_touching_neighbors.ipynb 8\n",
      "gemini-pro ../test_cases/count_objects_over_time.ipynb 8\n",
      "gemini-pro ../test_cases/count_overlapping_regions.ipynb 8\n",
      "gemini-pro ../test_cases/create_umap.ipynb 8\n",
      "gemini-pro ../test_cases/crop_quarter_image.ipynb 8\n",
      "gemini-pro ../test_cases/deconvolve_image.ipynb 8\n",
      "gemini-pro ../test_cases/detect_edges.ipynb 8\n",
      "gemini-pro ../test_cases/expand_labels_without_overlap.ipynb 8\n",
      "gemini-pro ../test_cases/extract_surface_measure_area.ipynb 8\n",
      "gemini-pro ../test_cases/fit_circle.ipynb 8\n",
      "gemini-pro ../test_cases/label_binary_image_and_count_labels.ipynb 8\n",
      "gemini-pro ../test_cases/label_sequentially.ipynb 8\n",
      "gemini-pro ../test_cases/list_image_files_in_folder.ipynb 8\n",
      "gemini-pro ../test_cases/map_pixel_count_of_labels.ipynb 8\n",
      "gemini-pro ../test_cases/mask_image.ipynb 8\n",
      "gemini-pro ../test_cases/maximum_intensity_projection.ipynb 8\n",
      "gemini-pro ../test_cases/mean_squared_error.ipynb 8\n",
      "gemini-pro ../test_cases/mean_std_column.ipynb 8\n",
      "gemini-pro ../test_cases/measure_aspect_ratio_of_regions.ipynb 8\n",
      "gemini-pro ../test_cases/measure_intensity_of_labels.ipynb 8\n",
      "gemini-pro ../test_cases/measure_intensity_over_time.ipynb 8\n",
      "gemini-pro ../test_cases/measure_mean_image_intensity.ipynb 8\n",
      "gemini-pro ../test_cases/measure_pixel_count_of_labels.ipynb 8\n",
      "gemini-pro ../test_cases/measure_properties_of_regions.ipynb 8\n",
      "gemini-pro ../test_cases/open_image_read_voxel_size.ipynb 8\n",
      "gemini-pro ../test_cases/open_image_return_dimensions.ipynb 8\n",
      "gemini-pro ../test_cases/open_nifti_image.ipynb 8\n",
      "gemini-pro ../test_cases/open_zarr.ipynb 8\n",
      "gemini-pro ../test_cases/pair_wise_correlation_matrix.ipynb 8\n",
      "gemini-pro ../test_cases/radial_intensity_profile.ipynb 8\n",
      "gemini-pro ../test_cases/region_growing_segmentation.ipynb 8\n",
      "gemini-pro ../test_cases/remove_labels_on_edges.ipynb 8\n",
      "gemini-pro ../test_cases/remove_noise_edge_preserving.ipynb 8\n",
      "gemini-pro ../test_cases/remove_small_labels.ipynb 8\n",
      "gemini-pro ../test_cases/return_hello_world.ipynb 8\n",
      "gemini-pro ../test_cases/rgb_to_grey_image_transform.ipynb 8\n",
      "gemini-pro ../test_cases/rotate_image_by_90_degrees.ipynb 8\n",
      "gemini-pro ../test_cases/subsample_image.ipynb 8\n",
      "gemini-pro ../test_cases/subtract_background_tophat.ipynb 8\n",
      "gemini-pro ../test_cases/sum_images.ipynb 8\n",
      "gemini-pro ../test_cases/sum_intensity_projection.ipynb 8\n",
      "gemini-pro ../test_cases/tiled_image_processing.ipynb 8\n",
      "gemini-pro ../test_cases/transpose_image_axes.ipynb 8\n",
      "gemini-pro ../test_cases/t_test.ipynb 8\n",
      "gemini-pro ../test_cases/workflow_batch_process_folder_count_labels.ipynb 8\n",
      "gemini-pro ../test_cases/workflow_batch_process_folder_measure_intensity.ipynb 8\n",
      "gemini-pro ../test_cases/workflow_segmentation_counting.ipynb 8\n",
      "gemini-pro ../test_cases/workflow_segmentation_measurement_summary.ipynb 8\n",
      "gemini-pro ../test_cases/workflow_segment_measure_umap.ipynb 8\n",
      "gemini-pro ../test_cases/workflow_watershed_segmentation_correction_measurement.ipynb 8\n",
      "gemini-pro ../test_cases/apply_otsu_threshold_and_count_postiive_pixels.ipynb 9\n",
      "gemini-pro ../test_cases/binary_closing.ipynb 9\n",
      "gemini-pro ../test_cases/binary_skeleton.ipynb 9\n",
      "gemini-pro ../test_cases/bland_altman.ipynb 9\n",
      "gemini-pro ../test_cases/combine_columns_of_tables.ipynb 9\n",
      "gemini-pro ../test_cases/convex_hull_measure_area.ipynb 9\n",
      "gemini-pro ../test_cases/convolve_images.ipynb 9\n",
      "gemini-pro ../test_cases/count_number_of_touching_neighbors.ipynb 9\n",
      "gemini-pro ../test_cases/count_objects_over_time.ipynb 9\n",
      "gemini-pro ../test_cases/count_overlapping_regions.ipynb 9\n",
      "gemini-pro ../test_cases/create_umap.ipynb 9\n",
      "gemini-pro ../test_cases/crop_quarter_image.ipynb 9\n",
      "gemini-pro ../test_cases/deconvolve_image.ipynb 9\n",
      "gemini-pro ../test_cases/detect_edges.ipynb 9\n",
      "gemini-pro ../test_cases/expand_labels_without_overlap.ipynb 9\n",
      "gemini-pro ../test_cases/extract_surface_measure_area.ipynb 9\n",
      "gemini-pro ../test_cases/fit_circle.ipynb 9\n",
      "gemini-pro ../test_cases/label_binary_image_and_count_labels.ipynb 9\n",
      "gemini-pro ../test_cases/label_sequentially.ipynb 9\n",
      "gemini-pro ../test_cases/list_image_files_in_folder.ipynb 9\n",
      "gemini-pro ../test_cases/map_pixel_count_of_labels.ipynb 9\n",
      "gemini-pro ../test_cases/mask_image.ipynb 9\n",
      "gemini-pro ../test_cases/maximum_intensity_projection.ipynb 9\n",
      "gemini-pro ../test_cases/mean_squared_error.ipynb 9\n",
      "gemini-pro ../test_cases/mean_std_column.ipynb 9\n",
      "gemini-pro ../test_cases/measure_aspect_ratio_of_regions.ipynb 9\n",
      "gemini-pro ../test_cases/measure_intensity_of_labels.ipynb 9\n",
      "gemini-pro ../test_cases/measure_intensity_over_time.ipynb 9\n",
      "gemini-pro ../test_cases/measure_mean_image_intensity.ipynb 9\n",
      "gemini-pro ../test_cases/measure_pixel_count_of_labels.ipynb 9\n",
      "gemini-pro ../test_cases/measure_properties_of_regions.ipynb 9\n",
      "gemini-pro ../test_cases/open_image_read_voxel_size.ipynb 9\n",
      "gemini-pro ../test_cases/open_image_return_dimensions.ipynb 9\n",
      "gemini-pro ../test_cases/open_nifti_image.ipynb 9\n",
      "gemini-pro ../test_cases/open_zarr.ipynb 9\n",
      "gemini-pro ../test_cases/pair_wise_correlation_matrix.ipynb 9\n",
      "gemini-pro ../test_cases/radial_intensity_profile.ipynb 9\n",
      "gemini-pro ../test_cases/region_growing_segmentation.ipynb 9\n",
      "gemini-pro ../test_cases/remove_labels_on_edges.ipynb 9\n",
      "gemini-pro ../test_cases/remove_noise_edge_preserving.ipynb 9\n",
      "gemini-pro ../test_cases/remove_small_labels.ipynb 9\n",
      "gemini-pro ../test_cases/return_hello_world.ipynb 9\n",
      "gemini-pro ../test_cases/rgb_to_grey_image_transform.ipynb 9\n",
      "gemini-pro ../test_cases/rotate_image_by_90_degrees.ipynb 9\n",
      "gemini-pro ../test_cases/subsample_image.ipynb 9\n",
      "gemini-pro ../test_cases/subtract_background_tophat.ipynb 9\n",
      "gemini-pro ../test_cases/sum_images.ipynb 9\n",
      "gemini-pro ../test_cases/sum_intensity_projection.ipynb 9\n",
      "gemini-pro ../test_cases/tiled_image_processing.ipynb 9\n",
      "gemini-pro ../test_cases/transpose_image_axes.ipynb 9\n",
      "gemini-pro ../test_cases/t_test.ipynb 9\n",
      "gemini-pro ../test_cases/workflow_batch_process_folder_count_labels.ipynb 9\n",
      "gemini-pro ../test_cases/workflow_batch_process_folder_measure_intensity.ipynb 9\n",
      "gemini-pro ../test_cases/workflow_segmentation_counting.ipynb 9\n",
      "gemini-pro ../test_cases/workflow_segmentation_measurement_summary.ipynb 9\n",
      "gemini-pro ../test_cases/workflow_segment_measure_umap.ipynb 9\n",
      "gemini-pro ../test_cases/workflow_watershed_segmentation_correction_measurement.ipynb 9\n",
      "claude-3-opus-20240229 ../test_cases/apply_otsu_threshold_and_count_postiive_pixels.ipynb 0\n",
      "claude-3-opus-20240229 ../test_cases/binary_closing.ipynb 0\n",
      "claude-3-opus-20240229 ../test_cases/binary_skeleton.ipynb 0\n",
      "claude-3-opus-20240229 ../test_cases/bland_altman.ipynb 0\n",
      "claude-3-opus-20240229 ../test_cases/combine_columns_of_tables.ipynb 0\n",
      "claude-3-opus-20240229 ../test_cases/convex_hull_measure_area.ipynb 0\n",
      "claude-3-opus-20240229 ../test_cases/convolve_images.ipynb 0\n",
      "claude-3-opus-20240229 ../test_cases/count_number_of_touching_neighbors.ipynb 0\n",
      "claude-3-opus-20240229 ../test_cases/count_objects_over_time.ipynb 0\n",
      "claude-3-opus-20240229 ../test_cases/count_overlapping_regions.ipynb 0\n",
      "claude-3-opus-20240229 ../test_cases/create_umap.ipynb 0\n",
      "claude-3-opus-20240229 ../test_cases/crop_quarter_image.ipynb 0\n",
      "claude-3-opus-20240229 ../test_cases/deconvolve_image.ipynb 0\n",
      "claude-3-opus-20240229 ../test_cases/detect_edges.ipynb 0\n",
      "claude-3-opus-20240229 ../test_cases/expand_labels_without_overlap.ipynb 0\n",
      "claude-3-opus-20240229 ../test_cases/extract_surface_measure_area.ipynb 0\n",
      "claude-3-opus-20240229 ../test_cases/fit_circle.ipynb 0\n",
      "claude-3-opus-20240229 ../test_cases/label_binary_image_and_count_labels.ipynb 0\n",
      "claude-3-opus-20240229 ../test_cases/label_sequentially.ipynb 0\n",
      "claude-3-opus-20240229 ../test_cases/list_image_files_in_folder.ipynb 0\n",
      "claude-3-opus-20240229 ../test_cases/map_pixel_count_of_labels.ipynb 0\n",
      "claude-3-opus-20240229 ../test_cases/mask_image.ipynb 0\n",
      "claude-3-opus-20240229 ../test_cases/maximum_intensity_projection.ipynb 0\n",
      "claude-3-opus-20240229 ../test_cases/mean_squared_error.ipynb 0\n",
      "claude-3-opus-20240229 ../test_cases/mean_std_column.ipynb 0\n",
      "claude-3-opus-20240229 ../test_cases/measure_aspect_ratio_of_regions.ipynb 0\n",
      "claude-3-opus-20240229 ../test_cases/measure_intensity_of_labels.ipynb 0\n",
      "claude-3-opus-20240229 ../test_cases/measure_intensity_over_time.ipynb 0\n",
      "claude-3-opus-20240229 ../test_cases/measure_mean_image_intensity.ipynb 0\n",
      "claude-3-opus-20240229 ../test_cases/measure_pixel_count_of_labels.ipynb 0\n",
      "claude-3-opus-20240229 ../test_cases/measure_properties_of_regions.ipynb 0\n",
      "claude-3-opus-20240229 ../test_cases/open_image_read_voxel_size.ipynb 0\n",
      "claude-3-opus-20240229 ../test_cases/open_image_return_dimensions.ipynb 0\n",
      "claude-3-opus-20240229 ../test_cases/open_nifti_image.ipynb 0\n",
      "claude-3-opus-20240229 ../test_cases/open_zarr.ipynb 0\n",
      "claude-3-opus-20240229 ../test_cases/pair_wise_correlation_matrix.ipynb 0\n",
      "claude-3-opus-20240229 ../test_cases/radial_intensity_profile.ipynb 0\n",
      "claude-3-opus-20240229 ../test_cases/region_growing_segmentation.ipynb 0\n",
      "claude-3-opus-20240229 ../test_cases/remove_labels_on_edges.ipynb 0\n",
      "claude-3-opus-20240229 ../test_cases/remove_noise_edge_preserving.ipynb 0\n",
      "claude-3-opus-20240229 ../test_cases/remove_small_labels.ipynb 0\n",
      "claude-3-opus-20240229 ../test_cases/return_hello_world.ipynb 0\n",
      "claude-3-opus-20240229 ../test_cases/rgb_to_grey_image_transform.ipynb 0\n",
      "claude-3-opus-20240229 ../test_cases/rotate_image_by_90_degrees.ipynb 0\n",
      "claude-3-opus-20240229 ../test_cases/subsample_image.ipynb 0\n",
      "claude-3-opus-20240229 ../test_cases/subtract_background_tophat.ipynb 0\n",
      "claude-3-opus-20240229 ../test_cases/sum_images.ipynb 0\n",
      "claude-3-opus-20240229 ../test_cases/sum_intensity_projection.ipynb 0\n",
      "claude-3-opus-20240229 ../test_cases/tiled_image_processing.ipynb 0\n",
      "claude-3-opus-20240229 ../test_cases/transpose_image_axes.ipynb 0\n",
      "claude-3-opus-20240229 ../test_cases/t_test.ipynb 0\n",
      "claude-3-opus-20240229 ../test_cases/workflow_batch_process_folder_count_labels.ipynb 0\n",
      "claude-3-opus-20240229 ../test_cases/workflow_batch_process_folder_measure_intensity.ipynb 0\n",
      "claude-3-opus-20240229 ../test_cases/workflow_segmentation_counting.ipynb 0\n",
      "claude-3-opus-20240229 ../test_cases/workflow_segmentation_measurement_summary.ipynb 0\n",
      "claude-3-opus-20240229 ../test_cases/workflow_segment_measure_umap.ipynb 0\n",
      "claude-3-opus-20240229 ../test_cases/workflow_watershed_segmentation_correction_measurement.ipynb 0\n",
      "claude-3-opus-20240229 ../test_cases/apply_otsu_threshold_and_count_postiive_pixels.ipynb 1\n",
      "claude-3-opus-20240229 ../test_cases/binary_closing.ipynb 1\n",
      "claude-3-opus-20240229 ../test_cases/binary_skeleton.ipynb 1\n",
      "claude-3-opus-20240229 ../test_cases/bland_altman.ipynb 1\n",
      "claude-3-opus-20240229 ../test_cases/combine_columns_of_tables.ipynb 1\n",
      "claude-3-opus-20240229 ../test_cases/convex_hull_measure_area.ipynb 1\n",
      "claude-3-opus-20240229 ../test_cases/convolve_images.ipynb 1\n",
      "claude-3-opus-20240229 ../test_cases/count_number_of_touching_neighbors.ipynb 1\n",
      "claude-3-opus-20240229 ../test_cases/count_objects_over_time.ipynb 1\n",
      "claude-3-opus-20240229 ../test_cases/count_overlapping_regions.ipynb 1\n",
      "claude-3-opus-20240229 ../test_cases/create_umap.ipynb 1\n",
      "claude-3-opus-20240229 ../test_cases/crop_quarter_image.ipynb 1\n",
      "claude-3-opus-20240229 ../test_cases/deconvolve_image.ipynb 1\n",
      "claude-3-opus-20240229 ../test_cases/detect_edges.ipynb 1\n",
      "claude-3-opus-20240229 ../test_cases/expand_labels_without_overlap.ipynb 1\n",
      "claude-3-opus-20240229 ../test_cases/extract_surface_measure_area.ipynb 1\n",
      "claude-3-opus-20240229 ../test_cases/fit_circle.ipynb 1\n",
      "claude-3-opus-20240229 ../test_cases/label_binary_image_and_count_labels.ipynb 1\n",
      "claude-3-opus-20240229 ../test_cases/label_sequentially.ipynb 1\n",
      "claude-3-opus-20240229 ../test_cases/list_image_files_in_folder.ipynb 1\n",
      "claude-3-opus-20240229 ../test_cases/map_pixel_count_of_labels.ipynb 1\n",
      "claude-3-opus-20240229 ../test_cases/mask_image.ipynb 1\n",
      "claude-3-opus-20240229 ../test_cases/maximum_intensity_projection.ipynb 1\n",
      "claude-3-opus-20240229 ../test_cases/mean_squared_error.ipynb 1\n",
      "claude-3-opus-20240229 ../test_cases/mean_std_column.ipynb 1\n",
      "claude-3-opus-20240229 ../test_cases/measure_aspect_ratio_of_regions.ipynb 1\n",
      "claude-3-opus-20240229 ../test_cases/measure_intensity_of_labels.ipynb 1\n",
      "claude-3-opus-20240229 ../test_cases/measure_intensity_over_time.ipynb 1\n",
      "claude-3-opus-20240229 ../test_cases/measure_mean_image_intensity.ipynb 1\n",
      "claude-3-opus-20240229 ../test_cases/measure_pixel_count_of_labels.ipynb 1\n",
      "claude-3-opus-20240229 ../test_cases/measure_properties_of_regions.ipynb 1\n",
      "claude-3-opus-20240229 ../test_cases/open_image_read_voxel_size.ipynb 1\n",
      "claude-3-opus-20240229 ../test_cases/open_image_return_dimensions.ipynb 1\n",
      "claude-3-opus-20240229 ../test_cases/open_nifti_image.ipynb 1\n",
      "claude-3-opus-20240229 ../test_cases/open_zarr.ipynb 1\n",
      "claude-3-opus-20240229 ../test_cases/pair_wise_correlation_matrix.ipynb 1\n",
      "claude-3-opus-20240229 ../test_cases/radial_intensity_profile.ipynb 1\n",
      "claude-3-opus-20240229 ../test_cases/region_growing_segmentation.ipynb 1\n",
      "claude-3-opus-20240229 ../test_cases/remove_labels_on_edges.ipynb 1\n",
      "claude-3-opus-20240229 ../test_cases/remove_noise_edge_preserving.ipynb 1\n",
      "claude-3-opus-20240229 ../test_cases/remove_small_labels.ipynb 1\n",
      "claude-3-opus-20240229 ../test_cases/return_hello_world.ipynb 1\n",
      "claude-3-opus-20240229 ../test_cases/rgb_to_grey_image_transform.ipynb 1\n",
      "claude-3-opus-20240229 ../test_cases/rotate_image_by_90_degrees.ipynb 1\n",
      "claude-3-opus-20240229 ../test_cases/subsample_image.ipynb 1\n",
      "claude-3-opus-20240229 ../test_cases/subtract_background_tophat.ipynb 1\n",
      "claude-3-opus-20240229 ../test_cases/sum_images.ipynb 1\n",
      "claude-3-opus-20240229 ../test_cases/sum_intensity_projection.ipynb 1\n",
      "claude-3-opus-20240229 ../test_cases/tiled_image_processing.ipynb 1\n",
      "claude-3-opus-20240229 ../test_cases/transpose_image_axes.ipynb 1\n",
      "claude-3-opus-20240229 ../test_cases/t_test.ipynb 1\n",
      "claude-3-opus-20240229 ../test_cases/workflow_batch_process_folder_count_labels.ipynb 1\n",
      "claude-3-opus-20240229 ../test_cases/workflow_batch_process_folder_measure_intensity.ipynb 1\n",
      "claude-3-opus-20240229 ../test_cases/workflow_segmentation_counting.ipynb 1\n",
      "claude-3-opus-20240229 ../test_cases/workflow_segmentation_measurement_summary.ipynb 1\n",
      "claude-3-opus-20240229 ../test_cases/workflow_segment_measure_umap.ipynb 1\n",
      "claude-3-opus-20240229 ../test_cases/workflow_watershed_segmentation_correction_measurement.ipynb 1\n",
      "claude-3-opus-20240229 ../test_cases/apply_otsu_threshold_and_count_postiive_pixels.ipynb 2\n",
      "claude-3-opus-20240229 ../test_cases/binary_closing.ipynb 2\n",
      "claude-3-opus-20240229 ../test_cases/binary_skeleton.ipynb 2\n",
      "claude-3-opus-20240229 ../test_cases/bland_altman.ipynb 2\n",
      "claude-3-opus-20240229 ../test_cases/combine_columns_of_tables.ipynb 2\n",
      "claude-3-opus-20240229 ../test_cases/convex_hull_measure_area.ipynb 2\n",
      "claude-3-opus-20240229 ../test_cases/convolve_images.ipynb 2\n",
      "claude-3-opus-20240229 ../test_cases/count_number_of_touching_neighbors.ipynb 2\n",
      "claude-3-opus-20240229 ../test_cases/count_objects_over_time.ipynb 2\n",
      "claude-3-opus-20240229 ../test_cases/count_overlapping_regions.ipynb 2\n",
      "claude-3-opus-20240229 ../test_cases/create_umap.ipynb 2\n",
      "claude-3-opus-20240229 ../test_cases/crop_quarter_image.ipynb 2\n",
      "claude-3-opus-20240229 ../test_cases/deconvolve_image.ipynb 2\n",
      "claude-3-opus-20240229 ../test_cases/detect_edges.ipynb 2\n",
      "claude-3-opus-20240229 ../test_cases/expand_labels_without_overlap.ipynb 2\n",
      "claude-3-opus-20240229 ../test_cases/extract_surface_measure_area.ipynb 2\n",
      "claude-3-opus-20240229 ../test_cases/fit_circle.ipynb 2\n",
      "claude-3-opus-20240229 ../test_cases/label_binary_image_and_count_labels.ipynb 2\n",
      "claude-3-opus-20240229 ../test_cases/label_sequentially.ipynb 2\n",
      "claude-3-opus-20240229 ../test_cases/list_image_files_in_folder.ipynb 2\n",
      "claude-3-opus-20240229 ../test_cases/map_pixel_count_of_labels.ipynb 2\n",
      "claude-3-opus-20240229 ../test_cases/mask_image.ipynb 2\n",
      "claude-3-opus-20240229 ../test_cases/maximum_intensity_projection.ipynb 2\n",
      "claude-3-opus-20240229 ../test_cases/mean_squared_error.ipynb 2\n",
      "claude-3-opus-20240229 ../test_cases/mean_std_column.ipynb 2\n",
      "claude-3-opus-20240229 ../test_cases/measure_aspect_ratio_of_regions.ipynb 2\n",
      "claude-3-opus-20240229 ../test_cases/measure_intensity_of_labels.ipynb 2\n",
      "claude-3-opus-20240229 ../test_cases/measure_intensity_over_time.ipynb 2\n",
      "claude-3-opus-20240229 ../test_cases/measure_mean_image_intensity.ipynb 2\n",
      "claude-3-opus-20240229 ../test_cases/measure_pixel_count_of_labels.ipynb 2\n",
      "claude-3-opus-20240229 ../test_cases/measure_properties_of_regions.ipynb 2\n",
      "claude-3-opus-20240229 ../test_cases/open_image_read_voxel_size.ipynb 2\n",
      "claude-3-opus-20240229 ../test_cases/open_image_return_dimensions.ipynb 2\n",
      "claude-3-opus-20240229 ../test_cases/open_nifti_image.ipynb 2\n",
      "claude-3-opus-20240229 ../test_cases/open_zarr.ipynb 2\n",
      "claude-3-opus-20240229 ../test_cases/pair_wise_correlation_matrix.ipynb 2\n",
      "claude-3-opus-20240229 ../test_cases/radial_intensity_profile.ipynb 2\n",
      "claude-3-opus-20240229 ../test_cases/region_growing_segmentation.ipynb 2\n",
      "claude-3-opus-20240229 ../test_cases/remove_labels_on_edges.ipynb 2\n",
      "claude-3-opus-20240229 ../test_cases/remove_noise_edge_preserving.ipynb 2\n",
      "claude-3-opus-20240229 ../test_cases/remove_small_labels.ipynb 2\n",
      "claude-3-opus-20240229 ../test_cases/return_hello_world.ipynb 2\n",
      "claude-3-opus-20240229 ../test_cases/rgb_to_grey_image_transform.ipynb 2\n",
      "claude-3-opus-20240229 ../test_cases/rotate_image_by_90_degrees.ipynb 2\n",
      "claude-3-opus-20240229 ../test_cases/subsample_image.ipynb 2\n",
      "claude-3-opus-20240229 ../test_cases/subtract_background_tophat.ipynb 2\n",
      "claude-3-opus-20240229 ../test_cases/sum_images.ipynb 2\n",
      "claude-3-opus-20240229 ../test_cases/sum_intensity_projection.ipynb 2\n",
      "claude-3-opus-20240229 ../test_cases/tiled_image_processing.ipynb 2\n",
      "claude-3-opus-20240229 ../test_cases/transpose_image_axes.ipynb 2\n",
      "claude-3-opus-20240229 ../test_cases/t_test.ipynb 2\n",
      "claude-3-opus-20240229 ../test_cases/workflow_batch_process_folder_count_labels.ipynb 2\n",
      "claude-3-opus-20240229 ../test_cases/workflow_batch_process_folder_measure_intensity.ipynb 2\n",
      "claude-3-opus-20240229 ../test_cases/workflow_segmentation_counting.ipynb 2\n",
      "claude-3-opus-20240229 ../test_cases/workflow_segmentation_measurement_summary.ipynb 2\n",
      "claude-3-opus-20240229 ../test_cases/workflow_segment_measure_umap.ipynb 2\n",
      "claude-3-opus-20240229 ../test_cases/workflow_watershed_segmentation_correction_measurement.ipynb 2\n",
      "claude-3-opus-20240229 ../test_cases/apply_otsu_threshold_and_count_postiive_pixels.ipynb 3\n",
      "claude-3-opus-20240229 ../test_cases/binary_closing.ipynb 3\n",
      "claude-3-opus-20240229 ../test_cases/binary_skeleton.ipynb 3\n",
      "claude-3-opus-20240229 ../test_cases/bland_altman.ipynb 3\n",
      "claude-3-opus-20240229 ../test_cases/combine_columns_of_tables.ipynb 3\n",
      "claude-3-opus-20240229 ../test_cases/convex_hull_measure_area.ipynb 3\n",
      "claude-3-opus-20240229 ../test_cases/convolve_images.ipynb 3\n",
      "claude-3-opus-20240229 ../test_cases/count_number_of_touching_neighbors.ipynb 3\n",
      "claude-3-opus-20240229 ../test_cases/count_objects_over_time.ipynb 3\n",
      "claude-3-opus-20240229 ../test_cases/count_overlapping_regions.ipynb 3\n",
      "claude-3-opus-20240229 ../test_cases/create_umap.ipynb 3\n",
      "claude-3-opus-20240229 ../test_cases/crop_quarter_image.ipynb 3\n",
      "claude-3-opus-20240229 ../test_cases/deconvolve_image.ipynb 3\n",
      "claude-3-opus-20240229 ../test_cases/detect_edges.ipynb 3\n",
      "claude-3-opus-20240229 ../test_cases/expand_labels_without_overlap.ipynb 3\n",
      "claude-3-opus-20240229 ../test_cases/extract_surface_measure_area.ipynb 3\n",
      "claude-3-opus-20240229 ../test_cases/fit_circle.ipynb 3\n",
      "claude-3-opus-20240229 ../test_cases/label_binary_image_and_count_labels.ipynb 3\n",
      "claude-3-opus-20240229 ../test_cases/label_sequentially.ipynb 3\n",
      "claude-3-opus-20240229 ../test_cases/list_image_files_in_folder.ipynb 3\n",
      "claude-3-opus-20240229 ../test_cases/map_pixel_count_of_labels.ipynb 3\n",
      "claude-3-opus-20240229 ../test_cases/mask_image.ipynb 3\n",
      "claude-3-opus-20240229 ../test_cases/maximum_intensity_projection.ipynb 3\n",
      "claude-3-opus-20240229 ../test_cases/mean_squared_error.ipynb 3\n",
      "claude-3-opus-20240229 ../test_cases/mean_std_column.ipynb 3\n",
      "claude-3-opus-20240229 ../test_cases/measure_aspect_ratio_of_regions.ipynb 3\n",
      "claude-3-opus-20240229 ../test_cases/measure_intensity_of_labels.ipynb 3\n",
      "claude-3-opus-20240229 ../test_cases/measure_intensity_over_time.ipynb 3\n",
      "claude-3-opus-20240229 ../test_cases/measure_mean_image_intensity.ipynb 3\n",
      "claude-3-opus-20240229 ../test_cases/measure_pixel_count_of_labels.ipynb 3\n",
      "claude-3-opus-20240229 ../test_cases/measure_properties_of_regions.ipynb 3\n",
      "claude-3-opus-20240229 ../test_cases/open_image_read_voxel_size.ipynb 3\n",
      "claude-3-opus-20240229 ../test_cases/open_image_return_dimensions.ipynb 3\n",
      "claude-3-opus-20240229 ../test_cases/open_nifti_image.ipynb 3\n",
      "claude-3-opus-20240229 ../test_cases/open_zarr.ipynb 3\n",
      "claude-3-opus-20240229 ../test_cases/pair_wise_correlation_matrix.ipynb 3\n",
      "claude-3-opus-20240229 ../test_cases/radial_intensity_profile.ipynb 3\n",
      "claude-3-opus-20240229 ../test_cases/region_growing_segmentation.ipynb 3\n",
      "claude-3-opus-20240229 ../test_cases/remove_labels_on_edges.ipynb 3\n",
      "claude-3-opus-20240229 ../test_cases/remove_noise_edge_preserving.ipynb 3\n",
      "claude-3-opus-20240229 ../test_cases/remove_small_labels.ipynb 3\n",
      "claude-3-opus-20240229 ../test_cases/return_hello_world.ipynb 3\n",
      "claude-3-opus-20240229 ../test_cases/rgb_to_grey_image_transform.ipynb 3\n",
      "claude-3-opus-20240229 ../test_cases/rotate_image_by_90_degrees.ipynb 3\n",
      "claude-3-opus-20240229 ../test_cases/subsample_image.ipynb 3\n",
      "claude-3-opus-20240229 ../test_cases/subtract_background_tophat.ipynb 3\n",
      "claude-3-opus-20240229 ../test_cases/sum_images.ipynb 3\n",
      "claude-3-opus-20240229 ../test_cases/sum_intensity_projection.ipynb 3\n",
      "claude-3-opus-20240229 ../test_cases/tiled_image_processing.ipynb 3\n",
      "claude-3-opus-20240229 ../test_cases/transpose_image_axes.ipynb 3\n",
      "claude-3-opus-20240229 ../test_cases/t_test.ipynb 3\n",
      "claude-3-opus-20240229 ../test_cases/workflow_batch_process_folder_count_labels.ipynb 3\n",
      "claude-3-opus-20240229 ../test_cases/workflow_batch_process_folder_measure_intensity.ipynb 3\n",
      "claude-3-opus-20240229 ../test_cases/workflow_segmentation_counting.ipynb 3\n",
      "claude-3-opus-20240229 ../test_cases/workflow_segmentation_measurement_summary.ipynb 3\n",
      "claude-3-opus-20240229 ../test_cases/workflow_segment_measure_umap.ipynb 3\n",
      "claude-3-opus-20240229 ../test_cases/workflow_watershed_segmentation_correction_measurement.ipynb 3\n",
      "claude-3-opus-20240229 ../test_cases/apply_otsu_threshold_and_count_postiive_pixels.ipynb 4\n",
      "claude-3-opus-20240229 ../test_cases/binary_closing.ipynb 4\n",
      "claude-3-opus-20240229 ../test_cases/binary_skeleton.ipynb 4\n",
      "claude-3-opus-20240229 ../test_cases/bland_altman.ipynb 4\n",
      "claude-3-opus-20240229 ../test_cases/combine_columns_of_tables.ipynb 4\n",
      "claude-3-opus-20240229 ../test_cases/convex_hull_measure_area.ipynb 4\n",
      "claude-3-opus-20240229 ../test_cases/convolve_images.ipynb 4\n",
      "claude-3-opus-20240229 ../test_cases/count_number_of_touching_neighbors.ipynb 4\n",
      "claude-3-opus-20240229 ../test_cases/count_objects_over_time.ipynb 4\n",
      "claude-3-opus-20240229 ../test_cases/count_overlapping_regions.ipynb 4\n",
      "claude-3-opus-20240229 ../test_cases/create_umap.ipynb 4\n",
      "claude-3-opus-20240229 ../test_cases/crop_quarter_image.ipynb 4\n",
      "claude-3-opus-20240229 ../test_cases/deconvolve_image.ipynb 4\n",
      "claude-3-opus-20240229 ../test_cases/detect_edges.ipynb 4\n",
      "claude-3-opus-20240229 ../test_cases/expand_labels_without_overlap.ipynb 4\n",
      "claude-3-opus-20240229 ../test_cases/extract_surface_measure_area.ipynb 4\n",
      "claude-3-opus-20240229 ../test_cases/fit_circle.ipynb 4\n",
      "claude-3-opus-20240229 ../test_cases/label_binary_image_and_count_labels.ipynb 4\n",
      "claude-3-opus-20240229 ../test_cases/label_sequentially.ipynb 4\n",
      "claude-3-opus-20240229 ../test_cases/list_image_files_in_folder.ipynb 4\n",
      "claude-3-opus-20240229 ../test_cases/map_pixel_count_of_labels.ipynb 4\n",
      "claude-3-opus-20240229 ../test_cases/mask_image.ipynb 4\n",
      "claude-3-opus-20240229 ../test_cases/maximum_intensity_projection.ipynb 4\n",
      "claude-3-opus-20240229 ../test_cases/mean_squared_error.ipynb 4\n",
      "claude-3-opus-20240229 ../test_cases/mean_std_column.ipynb 4\n",
      "claude-3-opus-20240229 ../test_cases/measure_aspect_ratio_of_regions.ipynb 4\n",
      "claude-3-opus-20240229 ../test_cases/measure_intensity_of_labels.ipynb 4\n",
      "claude-3-opus-20240229 ../test_cases/measure_intensity_over_time.ipynb 4\n",
      "claude-3-opus-20240229 ../test_cases/measure_mean_image_intensity.ipynb 4\n",
      "claude-3-opus-20240229 ../test_cases/measure_pixel_count_of_labels.ipynb 4\n",
      "claude-3-opus-20240229 ../test_cases/measure_properties_of_regions.ipynb 4\n",
      "claude-3-opus-20240229 ../test_cases/open_image_read_voxel_size.ipynb 4\n",
      "claude-3-opus-20240229 ../test_cases/open_image_return_dimensions.ipynb 4\n",
      "claude-3-opus-20240229 ../test_cases/open_nifti_image.ipynb 4\n",
      "claude-3-opus-20240229 ../test_cases/open_zarr.ipynb 4\n",
      "claude-3-opus-20240229 ../test_cases/pair_wise_correlation_matrix.ipynb 4\n",
      "claude-3-opus-20240229 ../test_cases/radial_intensity_profile.ipynb 4\n",
      "claude-3-opus-20240229 ../test_cases/region_growing_segmentation.ipynb 4\n",
      "claude-3-opus-20240229 ../test_cases/remove_labels_on_edges.ipynb 4\n",
      "claude-3-opus-20240229 ../test_cases/remove_noise_edge_preserving.ipynb 4\n",
      "claude-3-opus-20240229 ../test_cases/remove_small_labels.ipynb 4\n",
      "claude-3-opus-20240229 ../test_cases/return_hello_world.ipynb 4\n",
      "claude-3-opus-20240229 ../test_cases/rgb_to_grey_image_transform.ipynb 4\n",
      "claude-3-opus-20240229 ../test_cases/rotate_image_by_90_degrees.ipynb 4\n",
      "claude-3-opus-20240229 ../test_cases/subsample_image.ipynb 4\n",
      "claude-3-opus-20240229 ../test_cases/subtract_background_tophat.ipynb 4\n",
      "claude-3-opus-20240229 ../test_cases/sum_images.ipynb 4\n",
      "claude-3-opus-20240229 ../test_cases/sum_intensity_projection.ipynb 4\n",
      "claude-3-opus-20240229 ../test_cases/tiled_image_processing.ipynb 4\n",
      "claude-3-opus-20240229 ../test_cases/transpose_image_axes.ipynb 4\n",
      "claude-3-opus-20240229 ../test_cases/t_test.ipynb 4\n",
      "claude-3-opus-20240229 ../test_cases/workflow_batch_process_folder_count_labels.ipynb 4\n",
      "claude-3-opus-20240229 ../test_cases/workflow_batch_process_folder_measure_intensity.ipynb 4\n",
      "claude-3-opus-20240229 ../test_cases/workflow_segmentation_counting.ipynb 4\n",
      "claude-3-opus-20240229 ../test_cases/workflow_segmentation_measurement_summary.ipynb 4\n",
      "claude-3-opus-20240229 ../test_cases/workflow_segment_measure_umap.ipynb 4\n",
      "claude-3-opus-20240229 ../test_cases/workflow_watershed_segmentation_correction_measurement.ipynb 4\n",
      "claude-3-opus-20240229 ../test_cases/apply_otsu_threshold_and_count_postiive_pixels.ipynb 5\n",
      "claude-3-opus-20240229 ../test_cases/binary_closing.ipynb 5\n",
      "claude-3-opus-20240229 ../test_cases/binary_skeleton.ipynb 5\n",
      "claude-3-opus-20240229 ../test_cases/bland_altman.ipynb 5\n",
      "claude-3-opus-20240229 ../test_cases/combine_columns_of_tables.ipynb 5\n",
      "claude-3-opus-20240229 ../test_cases/convex_hull_measure_area.ipynb 5\n",
      "claude-3-opus-20240229 ../test_cases/convolve_images.ipynb 5\n",
      "claude-3-opus-20240229 ../test_cases/count_number_of_touching_neighbors.ipynb 5\n",
      "claude-3-opus-20240229 ../test_cases/count_objects_over_time.ipynb 5\n",
      "claude-3-opus-20240229 ../test_cases/count_overlapping_regions.ipynb 5\n",
      "claude-3-opus-20240229 ../test_cases/create_umap.ipynb 5\n",
      "claude-3-opus-20240229 ../test_cases/crop_quarter_image.ipynb 5\n",
      "claude-3-opus-20240229 ../test_cases/deconvolve_image.ipynb 5\n",
      "claude-3-opus-20240229 ../test_cases/detect_edges.ipynb 5\n",
      "claude-3-opus-20240229 ../test_cases/expand_labels_without_overlap.ipynb 5\n",
      "claude-3-opus-20240229 ../test_cases/extract_surface_measure_area.ipynb 5\n",
      "claude-3-opus-20240229 ../test_cases/fit_circle.ipynb 5\n",
      "claude-3-opus-20240229 ../test_cases/label_binary_image_and_count_labels.ipynb 5\n",
      "claude-3-opus-20240229 ../test_cases/label_sequentially.ipynb 5\n",
      "claude-3-opus-20240229 ../test_cases/list_image_files_in_folder.ipynb 5\n",
      "claude-3-opus-20240229 ../test_cases/map_pixel_count_of_labels.ipynb 5\n",
      "claude-3-opus-20240229 ../test_cases/mask_image.ipynb 5\n",
      "claude-3-opus-20240229 ../test_cases/maximum_intensity_projection.ipynb 5\n",
      "claude-3-opus-20240229 ../test_cases/mean_squared_error.ipynb 5\n",
      "claude-3-opus-20240229 ../test_cases/mean_std_column.ipynb 5\n",
      "claude-3-opus-20240229 ../test_cases/measure_aspect_ratio_of_regions.ipynb 5\n",
      "claude-3-opus-20240229 ../test_cases/measure_intensity_of_labels.ipynb 5\n",
      "claude-3-opus-20240229 ../test_cases/measure_intensity_over_time.ipynb 5\n",
      "claude-3-opus-20240229 ../test_cases/measure_mean_image_intensity.ipynb 5\n",
      "claude-3-opus-20240229 ../test_cases/measure_pixel_count_of_labels.ipynb 5\n",
      "claude-3-opus-20240229 ../test_cases/measure_properties_of_regions.ipynb 5\n",
      "claude-3-opus-20240229 ../test_cases/open_image_read_voxel_size.ipynb 5\n",
      "claude-3-opus-20240229 ../test_cases/open_image_return_dimensions.ipynb 5\n",
      "claude-3-opus-20240229 ../test_cases/open_nifti_image.ipynb 5\n",
      "claude-3-opus-20240229 ../test_cases/open_zarr.ipynb 5\n",
      "claude-3-opus-20240229 ../test_cases/pair_wise_correlation_matrix.ipynb 5\n",
      "claude-3-opus-20240229 ../test_cases/radial_intensity_profile.ipynb 5\n",
      "claude-3-opus-20240229 ../test_cases/region_growing_segmentation.ipynb 5\n",
      "claude-3-opus-20240229 ../test_cases/remove_labels_on_edges.ipynb 5\n",
      "claude-3-opus-20240229 ../test_cases/remove_noise_edge_preserving.ipynb 5\n",
      "claude-3-opus-20240229 ../test_cases/remove_small_labels.ipynb 5\n",
      "claude-3-opus-20240229 ../test_cases/return_hello_world.ipynb 5\n",
      "claude-3-opus-20240229 ../test_cases/rgb_to_grey_image_transform.ipynb 5\n",
      "claude-3-opus-20240229 ../test_cases/rotate_image_by_90_degrees.ipynb 5\n",
      "claude-3-opus-20240229 ../test_cases/subsample_image.ipynb 5\n",
      "claude-3-opus-20240229 ../test_cases/subtract_background_tophat.ipynb 5\n",
      "claude-3-opus-20240229 ../test_cases/sum_images.ipynb 5\n",
      "claude-3-opus-20240229 ../test_cases/sum_intensity_projection.ipynb 5\n",
      "claude-3-opus-20240229 ../test_cases/tiled_image_processing.ipynb 5\n",
      "claude-3-opus-20240229 ../test_cases/transpose_image_axes.ipynb 5\n",
      "claude-3-opus-20240229 ../test_cases/t_test.ipynb 5\n",
      "claude-3-opus-20240229 ../test_cases/workflow_batch_process_folder_count_labels.ipynb 5\n",
      "claude-3-opus-20240229 ../test_cases/workflow_batch_process_folder_measure_intensity.ipynb 5\n",
      "claude-3-opus-20240229 ../test_cases/workflow_segmentation_counting.ipynb 5\n",
      "claude-3-opus-20240229 ../test_cases/workflow_segmentation_measurement_summary.ipynb 5\n",
      "claude-3-opus-20240229 ../test_cases/workflow_segment_measure_umap.ipynb 5\n",
      "claude-3-opus-20240229 ../test_cases/workflow_watershed_segmentation_correction_measurement.ipynb 5\n",
      "claude-3-opus-20240229 ../test_cases/apply_otsu_threshold_and_count_postiive_pixels.ipynb 6\n",
      "claude-3-opus-20240229 ../test_cases/binary_closing.ipynb 6\n",
      "claude-3-opus-20240229 ../test_cases/binary_skeleton.ipynb 6\n",
      "claude-3-opus-20240229 ../test_cases/bland_altman.ipynb 6\n",
      "claude-3-opus-20240229 ../test_cases/combine_columns_of_tables.ipynb 6\n",
      "claude-3-opus-20240229 ../test_cases/convex_hull_measure_area.ipynb 6\n",
      "claude-3-opus-20240229 ../test_cases/convolve_images.ipynb 6\n",
      "claude-3-opus-20240229 ../test_cases/count_number_of_touching_neighbors.ipynb 6\n",
      "claude-3-opus-20240229 ../test_cases/count_objects_over_time.ipynb 6\n",
      "claude-3-opus-20240229 ../test_cases/count_overlapping_regions.ipynb 6\n",
      "claude-3-opus-20240229 ../test_cases/create_umap.ipynb 6\n",
      "claude-3-opus-20240229 ../test_cases/crop_quarter_image.ipynb 6\n",
      "claude-3-opus-20240229 ../test_cases/deconvolve_image.ipynb 6\n",
      "claude-3-opus-20240229 ../test_cases/detect_edges.ipynb 6\n",
      "claude-3-opus-20240229 ../test_cases/expand_labels_without_overlap.ipynb 6\n",
      "claude-3-opus-20240229 ../test_cases/extract_surface_measure_area.ipynb 6\n",
      "claude-3-opus-20240229 ../test_cases/fit_circle.ipynb 6\n",
      "claude-3-opus-20240229 ../test_cases/label_binary_image_and_count_labels.ipynb 6\n",
      "claude-3-opus-20240229 ../test_cases/label_sequentially.ipynb 6\n",
      "claude-3-opus-20240229 ../test_cases/list_image_files_in_folder.ipynb 6\n",
      "claude-3-opus-20240229 ../test_cases/map_pixel_count_of_labels.ipynb 6\n",
      "claude-3-opus-20240229 ../test_cases/mask_image.ipynb 6\n",
      "claude-3-opus-20240229 ../test_cases/maximum_intensity_projection.ipynb 6\n",
      "claude-3-opus-20240229 ../test_cases/mean_squared_error.ipynb 6\n",
      "claude-3-opus-20240229 ../test_cases/mean_std_column.ipynb 6\n",
      "claude-3-opus-20240229 ../test_cases/measure_aspect_ratio_of_regions.ipynb 6\n",
      "claude-3-opus-20240229 ../test_cases/measure_intensity_of_labels.ipynb 6\n",
      "claude-3-opus-20240229 ../test_cases/measure_intensity_over_time.ipynb 6\n",
      "claude-3-opus-20240229 ../test_cases/measure_mean_image_intensity.ipynb 6\n",
      "claude-3-opus-20240229 ../test_cases/measure_pixel_count_of_labels.ipynb 6\n",
      "claude-3-opus-20240229 ../test_cases/measure_properties_of_regions.ipynb 6\n",
      "claude-3-opus-20240229 ../test_cases/open_image_read_voxel_size.ipynb 6\n",
      "claude-3-opus-20240229 ../test_cases/open_image_return_dimensions.ipynb 6\n",
      "claude-3-opus-20240229 ../test_cases/open_nifti_image.ipynb 6\n",
      "claude-3-opus-20240229 ../test_cases/open_zarr.ipynb 6\n",
      "claude-3-opus-20240229 ../test_cases/pair_wise_correlation_matrix.ipynb 6\n",
      "claude-3-opus-20240229 ../test_cases/radial_intensity_profile.ipynb 6\n",
      "claude-3-opus-20240229 ../test_cases/region_growing_segmentation.ipynb 6\n",
      "claude-3-opus-20240229 ../test_cases/remove_labels_on_edges.ipynb 6\n",
      "claude-3-opus-20240229 ../test_cases/remove_noise_edge_preserving.ipynb 6\n",
      "claude-3-opus-20240229 ../test_cases/remove_small_labels.ipynb 6\n",
      "claude-3-opus-20240229 ../test_cases/return_hello_world.ipynb 6\n",
      "claude-3-opus-20240229 ../test_cases/rgb_to_grey_image_transform.ipynb 6\n",
      "claude-3-opus-20240229 ../test_cases/rotate_image_by_90_degrees.ipynb 6\n",
      "claude-3-opus-20240229 ../test_cases/subsample_image.ipynb 6\n",
      "claude-3-opus-20240229 ../test_cases/subtract_background_tophat.ipynb 6\n",
      "claude-3-opus-20240229 ../test_cases/sum_images.ipynb 6\n",
      "claude-3-opus-20240229 ../test_cases/sum_intensity_projection.ipynb 6\n",
      "claude-3-opus-20240229 ../test_cases/tiled_image_processing.ipynb 6\n",
      "claude-3-opus-20240229 ../test_cases/transpose_image_axes.ipynb 6\n",
      "claude-3-opus-20240229 ../test_cases/t_test.ipynb 6\n",
      "claude-3-opus-20240229 ../test_cases/workflow_batch_process_folder_count_labels.ipynb 6\n",
      "claude-3-opus-20240229 ../test_cases/workflow_batch_process_folder_measure_intensity.ipynb 6\n",
      "claude-3-opus-20240229 ../test_cases/workflow_segmentation_counting.ipynb 6\n",
      "claude-3-opus-20240229 ../test_cases/workflow_segmentation_measurement_summary.ipynb 6\n",
      "claude-3-opus-20240229 ../test_cases/workflow_segment_measure_umap.ipynb 6\n",
      "claude-3-opus-20240229 ../test_cases/workflow_watershed_segmentation_correction_measurement.ipynb 6\n",
      "claude-3-opus-20240229 ../test_cases/apply_otsu_threshold_and_count_postiive_pixels.ipynb 7\n",
      "claude-3-opus-20240229 ../test_cases/binary_closing.ipynb 7\n",
      "claude-3-opus-20240229 ../test_cases/binary_skeleton.ipynb 7\n",
      "claude-3-opus-20240229 ../test_cases/bland_altman.ipynb 7\n",
      "claude-3-opus-20240229 ../test_cases/combine_columns_of_tables.ipynb 7\n",
      "claude-3-opus-20240229 ../test_cases/convex_hull_measure_area.ipynb 7\n",
      "claude-3-opus-20240229 ../test_cases/convolve_images.ipynb 7\n",
      "claude-3-opus-20240229 ../test_cases/count_number_of_touching_neighbors.ipynb 7\n",
      "claude-3-opus-20240229 ../test_cases/count_objects_over_time.ipynb 7\n",
      "claude-3-opus-20240229 ../test_cases/count_overlapping_regions.ipynb 7\n",
      "claude-3-opus-20240229 ../test_cases/create_umap.ipynb 7\n",
      "claude-3-opus-20240229 ../test_cases/crop_quarter_image.ipynb 7\n",
      "claude-3-opus-20240229 ../test_cases/deconvolve_image.ipynb 7\n",
      "claude-3-opus-20240229 ../test_cases/detect_edges.ipynb 7\n",
      "claude-3-opus-20240229 ../test_cases/expand_labels_without_overlap.ipynb 7\n",
      "claude-3-opus-20240229 ../test_cases/extract_surface_measure_area.ipynb 7\n",
      "claude-3-opus-20240229 ../test_cases/fit_circle.ipynb 7\n",
      "claude-3-opus-20240229 ../test_cases/label_binary_image_and_count_labels.ipynb 7\n",
      "claude-3-opus-20240229 ../test_cases/label_sequentially.ipynb 7\n",
      "claude-3-opus-20240229 ../test_cases/list_image_files_in_folder.ipynb 7\n",
      "claude-3-opus-20240229 ../test_cases/map_pixel_count_of_labels.ipynb 7\n",
      "claude-3-opus-20240229 ../test_cases/mask_image.ipynb 7\n",
      "claude-3-opus-20240229 ../test_cases/maximum_intensity_projection.ipynb 7\n",
      "claude-3-opus-20240229 ../test_cases/mean_squared_error.ipynb 7\n",
      "claude-3-opus-20240229 ../test_cases/mean_std_column.ipynb 7\n",
      "claude-3-opus-20240229 ../test_cases/measure_aspect_ratio_of_regions.ipynb 7\n",
      "claude-3-opus-20240229 ../test_cases/measure_intensity_of_labels.ipynb 7\n",
      "claude-3-opus-20240229 ../test_cases/measure_intensity_over_time.ipynb 7\n",
      "claude-3-opus-20240229 ../test_cases/measure_mean_image_intensity.ipynb 7\n",
      "claude-3-opus-20240229 ../test_cases/measure_pixel_count_of_labels.ipynb 7\n",
      "claude-3-opus-20240229 ../test_cases/measure_properties_of_regions.ipynb 7\n",
      "claude-3-opus-20240229 ../test_cases/open_image_read_voxel_size.ipynb 7\n",
      "claude-3-opus-20240229 ../test_cases/open_image_return_dimensions.ipynb 7\n",
      "claude-3-opus-20240229 ../test_cases/open_nifti_image.ipynb 7\n",
      "claude-3-opus-20240229 ../test_cases/open_zarr.ipynb 7\n",
      "claude-3-opus-20240229 ../test_cases/pair_wise_correlation_matrix.ipynb 7\n",
      "claude-3-opus-20240229 ../test_cases/radial_intensity_profile.ipynb 7\n",
      "claude-3-opus-20240229 ../test_cases/region_growing_segmentation.ipynb 7\n",
      "claude-3-opus-20240229 ../test_cases/remove_labels_on_edges.ipynb 7\n",
      "claude-3-opus-20240229 ../test_cases/remove_noise_edge_preserving.ipynb 7\n",
      "claude-3-opus-20240229 ../test_cases/remove_small_labels.ipynb 7\n",
      "claude-3-opus-20240229 ../test_cases/return_hello_world.ipynb 7\n",
      "claude-3-opus-20240229 ../test_cases/rgb_to_grey_image_transform.ipynb 7\n",
      "claude-3-opus-20240229 ../test_cases/rotate_image_by_90_degrees.ipynb 7\n",
      "claude-3-opus-20240229 ../test_cases/subsample_image.ipynb 7\n",
      "claude-3-opus-20240229 ../test_cases/subtract_background_tophat.ipynb 7\n",
      "claude-3-opus-20240229 ../test_cases/sum_images.ipynb 7\n",
      "claude-3-opus-20240229 ../test_cases/sum_intensity_projection.ipynb 7\n",
      "claude-3-opus-20240229 ../test_cases/tiled_image_processing.ipynb 7\n",
      "claude-3-opus-20240229 ../test_cases/transpose_image_axes.ipynb 7\n",
      "claude-3-opus-20240229 ../test_cases/t_test.ipynb 7\n",
      "claude-3-opus-20240229 ../test_cases/workflow_batch_process_folder_count_labels.ipynb 7\n",
      "claude-3-opus-20240229 ../test_cases/workflow_batch_process_folder_measure_intensity.ipynb 7\n",
      "claude-3-opus-20240229 ../test_cases/workflow_segmentation_counting.ipynb 7\n",
      "claude-3-opus-20240229 ../test_cases/workflow_segmentation_measurement_summary.ipynb 7\n",
      "claude-3-opus-20240229 ../test_cases/workflow_segment_measure_umap.ipynb 7\n",
      "claude-3-opus-20240229 ../test_cases/workflow_watershed_segmentation_correction_measurement.ipynb 7\n",
      "claude-3-opus-20240229 ../test_cases/apply_otsu_threshold_and_count_postiive_pixels.ipynb 8\n",
      "claude-3-opus-20240229 ../test_cases/binary_closing.ipynb 8\n",
      "claude-3-opus-20240229 ../test_cases/binary_skeleton.ipynb 8\n",
      "claude-3-opus-20240229 ../test_cases/bland_altman.ipynb 8\n",
      "claude-3-opus-20240229 ../test_cases/combine_columns_of_tables.ipynb 8\n",
      "claude-3-opus-20240229 ../test_cases/convex_hull_measure_area.ipynb 8\n",
      "claude-3-opus-20240229 ../test_cases/convolve_images.ipynb 8\n",
      "claude-3-opus-20240229 ../test_cases/count_number_of_touching_neighbors.ipynb 8\n",
      "claude-3-opus-20240229 ../test_cases/count_objects_over_time.ipynb 8\n",
      "claude-3-opus-20240229 ../test_cases/count_overlapping_regions.ipynb 8\n",
      "claude-3-opus-20240229 ../test_cases/create_umap.ipynb 8\n",
      "claude-3-opus-20240229 ../test_cases/crop_quarter_image.ipynb 8\n",
      "claude-3-opus-20240229 ../test_cases/deconvolve_image.ipynb 8\n",
      "claude-3-opus-20240229 ../test_cases/detect_edges.ipynb 8\n",
      "claude-3-opus-20240229 ../test_cases/expand_labels_without_overlap.ipynb 8\n",
      "claude-3-opus-20240229 ../test_cases/extract_surface_measure_area.ipynb 8\n",
      "claude-3-opus-20240229 ../test_cases/fit_circle.ipynb 8\n",
      "claude-3-opus-20240229 ../test_cases/label_binary_image_and_count_labels.ipynb 8\n",
      "claude-3-opus-20240229 ../test_cases/label_sequentially.ipynb 8\n",
      "claude-3-opus-20240229 ../test_cases/list_image_files_in_folder.ipynb 8\n",
      "claude-3-opus-20240229 ../test_cases/map_pixel_count_of_labels.ipynb 8\n",
      "claude-3-opus-20240229 ../test_cases/mask_image.ipynb 8\n",
      "claude-3-opus-20240229 ../test_cases/maximum_intensity_projection.ipynb 8\n",
      "claude-3-opus-20240229 ../test_cases/mean_squared_error.ipynb 8\n",
      "claude-3-opus-20240229 ../test_cases/mean_std_column.ipynb 8\n",
      "claude-3-opus-20240229 ../test_cases/measure_aspect_ratio_of_regions.ipynb 8\n",
      "claude-3-opus-20240229 ../test_cases/measure_intensity_of_labels.ipynb 8\n",
      "claude-3-opus-20240229 ../test_cases/measure_intensity_over_time.ipynb 8\n",
      "claude-3-opus-20240229 ../test_cases/measure_mean_image_intensity.ipynb 8\n",
      "claude-3-opus-20240229 ../test_cases/measure_pixel_count_of_labels.ipynb 8\n",
      "claude-3-opus-20240229 ../test_cases/measure_properties_of_regions.ipynb 8\n",
      "claude-3-opus-20240229 ../test_cases/open_image_read_voxel_size.ipynb 8\n",
      "claude-3-opus-20240229 ../test_cases/open_image_return_dimensions.ipynb 8\n",
      "claude-3-opus-20240229 ../test_cases/open_nifti_image.ipynb 8\n",
      "claude-3-opus-20240229 ../test_cases/open_zarr.ipynb 8\n",
      "claude-3-opus-20240229 ../test_cases/pair_wise_correlation_matrix.ipynb 8\n",
      "claude-3-opus-20240229 ../test_cases/radial_intensity_profile.ipynb 8\n",
      "claude-3-opus-20240229 ../test_cases/region_growing_segmentation.ipynb 8\n",
      "claude-3-opus-20240229 ../test_cases/remove_labels_on_edges.ipynb 8\n",
      "claude-3-opus-20240229 ../test_cases/remove_noise_edge_preserving.ipynb 8\n",
      "claude-3-opus-20240229 ../test_cases/remove_small_labels.ipynb 8\n",
      "claude-3-opus-20240229 ../test_cases/return_hello_world.ipynb 8\n",
      "claude-3-opus-20240229 ../test_cases/rgb_to_grey_image_transform.ipynb 8\n",
      "claude-3-opus-20240229 ../test_cases/rotate_image_by_90_degrees.ipynb 8\n",
      "claude-3-opus-20240229 ../test_cases/subsample_image.ipynb 8\n",
      "claude-3-opus-20240229 ../test_cases/subtract_background_tophat.ipynb 8\n",
      "claude-3-opus-20240229 ../test_cases/sum_images.ipynb 8\n",
      "claude-3-opus-20240229 ../test_cases/sum_intensity_projection.ipynb 8\n",
      "claude-3-opus-20240229 ../test_cases/tiled_image_processing.ipynb 8\n",
      "claude-3-opus-20240229 ../test_cases/transpose_image_axes.ipynb 8\n",
      "claude-3-opus-20240229 ../test_cases/t_test.ipynb 8\n",
      "claude-3-opus-20240229 ../test_cases/workflow_batch_process_folder_count_labels.ipynb 8\n",
      "claude-3-opus-20240229 ../test_cases/workflow_batch_process_folder_measure_intensity.ipynb 8\n",
      "claude-3-opus-20240229 ../test_cases/workflow_segmentation_counting.ipynb 8\n",
      "claude-3-opus-20240229 ../test_cases/workflow_segmentation_measurement_summary.ipynb 8\n",
      "claude-3-opus-20240229 ../test_cases/workflow_segment_measure_umap.ipynb 8\n",
      "claude-3-opus-20240229 ../test_cases/workflow_watershed_segmentation_correction_measurement.ipynb 8\n",
      "claude-3-opus-20240229 ../test_cases/apply_otsu_threshold_and_count_postiive_pixels.ipynb 9\n",
      "claude-3-opus-20240229 ../test_cases/binary_closing.ipynb 9\n",
      "claude-3-opus-20240229 ../test_cases/binary_skeleton.ipynb 9\n",
      "claude-3-opus-20240229 ../test_cases/bland_altman.ipynb 9\n",
      "claude-3-opus-20240229 ../test_cases/combine_columns_of_tables.ipynb 9\n",
      "claude-3-opus-20240229 ../test_cases/convex_hull_measure_area.ipynb 9\n",
      "claude-3-opus-20240229 ../test_cases/convolve_images.ipynb 9\n",
      "claude-3-opus-20240229 ../test_cases/count_number_of_touching_neighbors.ipynb 9\n",
      "claude-3-opus-20240229 ../test_cases/count_objects_over_time.ipynb 9\n",
      "claude-3-opus-20240229 ../test_cases/count_overlapping_regions.ipynb 9\n",
      "claude-3-opus-20240229 ../test_cases/create_umap.ipynb 9\n",
      "claude-3-opus-20240229 ../test_cases/crop_quarter_image.ipynb 9\n",
      "claude-3-opus-20240229 ../test_cases/deconvolve_image.ipynb 9\n",
      "claude-3-opus-20240229 ../test_cases/detect_edges.ipynb 9\n",
      "claude-3-opus-20240229 ../test_cases/expand_labels_without_overlap.ipynb 9\n",
      "claude-3-opus-20240229 ../test_cases/extract_surface_measure_area.ipynb 9\n",
      "claude-3-opus-20240229 ../test_cases/fit_circle.ipynb 9\n",
      "claude-3-opus-20240229 ../test_cases/label_binary_image_and_count_labels.ipynb 9\n",
      "claude-3-opus-20240229 ../test_cases/label_sequentially.ipynb 9\n",
      "claude-3-opus-20240229 ../test_cases/list_image_files_in_folder.ipynb 9\n",
      "claude-3-opus-20240229 ../test_cases/map_pixel_count_of_labels.ipynb 9\n",
      "claude-3-opus-20240229 ../test_cases/mask_image.ipynb 9\n",
      "claude-3-opus-20240229 ../test_cases/maximum_intensity_projection.ipynb 9\n",
      "claude-3-opus-20240229 ../test_cases/mean_squared_error.ipynb 9\n",
      "claude-3-opus-20240229 ../test_cases/mean_std_column.ipynb 9\n",
      "claude-3-opus-20240229 ../test_cases/measure_aspect_ratio_of_regions.ipynb 9\n",
      "claude-3-opus-20240229 ../test_cases/measure_intensity_of_labels.ipynb 9\n",
      "claude-3-opus-20240229 ../test_cases/measure_intensity_over_time.ipynb 9\n",
      "claude-3-opus-20240229 ../test_cases/measure_mean_image_intensity.ipynb 9\n",
      "claude-3-opus-20240229 ../test_cases/measure_pixel_count_of_labels.ipynb 9\n",
      "claude-3-opus-20240229 ../test_cases/measure_properties_of_regions.ipynb 9\n",
      "claude-3-opus-20240229 ../test_cases/open_image_read_voxel_size.ipynb 9\n",
      "claude-3-opus-20240229 ../test_cases/open_image_return_dimensions.ipynb 9\n",
      "claude-3-opus-20240229 ../test_cases/open_nifti_image.ipynb 9\n",
      "claude-3-opus-20240229 ../test_cases/open_zarr.ipynb 9\n",
      "claude-3-opus-20240229 ../test_cases/pair_wise_correlation_matrix.ipynb 9\n",
      "claude-3-opus-20240229 ../test_cases/radial_intensity_profile.ipynb 9\n",
      "claude-3-opus-20240229 ../test_cases/region_growing_segmentation.ipynb 9\n",
      "claude-3-opus-20240229 ../test_cases/remove_labels_on_edges.ipynb 9\n",
      "claude-3-opus-20240229 ../test_cases/remove_noise_edge_preserving.ipynb 9\n",
      "claude-3-opus-20240229 ../test_cases/remove_small_labels.ipynb 9\n",
      "claude-3-opus-20240229 ../test_cases/return_hello_world.ipynb 9\n",
      "claude-3-opus-20240229 ../test_cases/rgb_to_grey_image_transform.ipynb 9\n",
      "claude-3-opus-20240229 ../test_cases/rotate_image_by_90_degrees.ipynb 9\n",
      "claude-3-opus-20240229 ../test_cases/subsample_image.ipynb 9\n",
      "claude-3-opus-20240229 ../test_cases/subtract_background_tophat.ipynb 9\n",
      "claude-3-opus-20240229 ../test_cases/sum_images.ipynb 9\n",
      "claude-3-opus-20240229 ../test_cases/sum_intensity_projection.ipynb 9\n",
      "claude-3-opus-20240229 ../test_cases/tiled_image_processing.ipynb 9\n",
      "claude-3-opus-20240229 ../test_cases/transpose_image_axes.ipynb 9\n",
      "claude-3-opus-20240229 ../test_cases/t_test.ipynb 9\n",
      "claude-3-opus-20240229 ../test_cases/workflow_batch_process_folder_count_labels.ipynb 9\n",
      "claude-3-opus-20240229 ../test_cases/workflow_batch_process_folder_measure_intensity.ipynb 9\n",
      "claude-3-opus-20240229 ../test_cases/workflow_segmentation_counting.ipynb 9\n",
      "claude-3-opus-20240229 ../test_cases/workflow_segmentation_measurement_summary.ipynb 9\n",
      "claude-3-opus-20240229 ../test_cases/workflow_segment_measure_umap.ipynb 9\n",
      "claude-3-opus-20240229 ../test_cases/workflow_watershed_segmentation_correction_measurement.ipynb 9\n"
     ]
    }
   ],
   "source": [
    "problems = read_problems(directory + problem_file)\n",
    "\n",
    "for model_name, generate_one_completion in code_generators.items():\n",
    "    samples = []\n",
    "\n",
    "    for i in range(num_samples_per_task):\n",
    "        for task_id in problems:\n",
    "            print(model_name, task_id, i)\n",
    "\n",
    "            response = generate_one_completion(problems[task_id][\"prompt\"])\n",
    "            code = extract_python(response)\n",
    "            \n",
    "            samples.append(dict(task_id=task_id, completion=code, full_response=response))\n",
    "    \n",
    "    write_jsonl(f\"{directory}samples_{model_name}.jsonl\", samples)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "id": "27b71358-71f4-4719-91f5-6e1608b94b44",
   "metadata": {},
   "outputs": [],
   "source": []
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "id": "b1b07c95-8bff-4088-8e78-86d2b149ea88",
   "metadata": {},
   "outputs": [],
   "source": []
  }
 ],
 "metadata": {
  "kernelspec": {
   "display_name": "Python 3 (ipykernel)",
   "language": "python",
   "name": "python3"
  },
  "language_info": {
   "codemirror_mode": {
    "name": "ipython",
    "version": 3
   },
   "file_extension": ".py",
   "mimetype": "text/x-python",
   "name": "python",
   "nbconvert_exporter": "python",
   "pygments_lexer": "ipython3",
   "version": "3.10.14"
  }
 },
 "nbformat": 4,
 "nbformat_minor": 5
}